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Conserved domains on  [gi|186511645|ref|NP_192757|]
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F-box and associated interaction domains-containing protein [Arabidopsis thaliana]

Protein Classification

F-box protein( domain architecture ID 17779305)

F-box protein functions as the substrate-recognition component of an SCF (Skp1-Cullin-F-box protein) ubiquitin-protein ligase that is involved in ubiquitin-dependent degradation

CATH:  1.20.1280.50
Gene Ontology:  GO:0006511|GO:0019005|GO:0005515
PubMed:  31898225|11178263
SCOP:  4001927

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FBA_1 pfam07734
F-box associated; Most of these proteins contain pfam00646 at the N terminus, suggesting that ...
 203-362 1.83e-42

F-box associated; Most of these proteins contain pfam00646 at the N terminus, suggesting that they are effectors linked with ubiquitination.


:

Pssm-ID: 254394  Cd Length: 159  Bit Score: 145.44  E-value: 1.83e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186511645  203 GMSVNGNTYWLASTNKDlTSSSFLLGFDFSTERF-VRVSLPGDHLSDPVFALAVTREDpKICVA--IIQELHIDVWIATT 279
Cdd:pfam07734   1 GVSLKGNTYWLAREKET-NEEDFLLSFDFTTERFgPRLPLPFQSPDLDTVSLSVVREE-KLAVLlqEDDTSKIEIWVTTK 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186511645  280 IESTgAASWSKFLSVELANLYERICLDSWMNFLVDQKNKVLVYRDGNYWISNVFLHVVGEDKCiqVDHHDSVSRCSLVVN 359
Cdd:pfam07734  79 IEPN-AVSWSKFLTVDMPPLPGLFFHFFAGSFFIDEEKKVAVVCDKDKEKKTNTIYIIGEDGY--FKEVDSSYCSPLVCS 155


                  ...
gi 186511645  360 YVP 362
Cdd:pfam07734 156 YVP 158
F-box_AtFBW1-like cd22157
F-box domain found in Arabidopsis thaliana F-box/WD-40 repeat-containing protein 1 (AtFBW1) ...
 8-45 3.25e-11

F-box domain found in Arabidopsis thaliana F-box/WD-40 repeat-containing protein 1 (AtFBW1) and similar proteins; AtFBW1, also called WD-40-associated F-box protein 1, is an F-box protein that contains four WD-40 repeats, which are separated from each other by a spacer region. Like other F-box proteins, AtFBW1 may be a component of SCF (Skp1 Cdc53 F-box protein) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. This subfamily also contains many F-box only proteins that do not have any WD repeat. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression.


:

Pssm-ID: 438928  Cd Length: 39  Bit Score: 57.47  E-value: 3.25e-11
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 186511645   8 DLPEDLVMEILARVPTVTLVRLQSTSKRWNVLIEDKRF 45
Cdd:cd22157    2 SLPDDLVEEILSRLPAKSLLRFRCVCKQWNSLISSPSF 39
 
Name Accession Description Interval E-value
FBA_1 pfam07734
F-box associated; Most of these proteins contain pfam00646 at the N terminus, suggesting that ...
 203-362 1.83e-42

F-box associated; Most of these proteins contain pfam00646 at the N terminus, suggesting that they are effectors linked with ubiquitination.


Pssm-ID: 254394  Cd Length: 159  Bit Score: 145.44  E-value: 1.83e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186511645  203 GMSVNGNTYWLASTNKDlTSSSFLLGFDFSTERF-VRVSLPGDHLSDPVFALAVTREDpKICVA--IIQELHIDVWIATT 279
Cdd:pfam07734   1 GVSLKGNTYWLAREKET-NEEDFLLSFDFTTERFgPRLPLPFQSPDLDTVSLSVVREE-KLAVLlqEDDTSKIEIWVTTK 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186511645  280 IESTgAASWSKFLSVELANLYERICLDSWMNFLVDQKNKVLVYRDGNYWISNVFLHVVGEDKCiqVDHHDSVSRCSLVVN 359
Cdd:pfam07734  79 IEPN-AVSWSKFLTVDMPPLPGLFFHFFAGSFFIDEEKKVAVVCDKDKEKKTNTIYIIGEDGY--FKEVDSSYCSPLVCS 155


                  ...
gi 186511645  360 YVP 362
Cdd:pfam07734 156 YVP 158
F_box_assoc_1 TIGR01640
F-box protein interaction domain; This model describes a large family of plant domains, with ...
 106-340 9.47e-36

F-box protein interaction domain; This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.


Pssm-ID: 273726 [Multi-domain]  Cd Length: 230  Bit Score: 130.17  E-value: 9.47e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186511645  106 VFHCDGfLLCTTVDNRLVVSNPCSRDTKWIQPRN---FYKKFDIFALGKSSCNK-YKIMRMDQFYPDRPEFmNYEIYDFN 181
Cdd:TIGR01640   1 VVPCDG-LICFSYGKRLVVWNPSTGQSRWLPTPKsrrSNKESDTYFLGYDPIEKqYKVLCFSDRSGNRNQS-EHQVYTLG 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186511645  182 SNSWRVVGKITDWFIPRcmDRGMSVNGNTYWLASTNKDlTSSSFLLGFDFSTERFVRVSLPGDHLSDPV--FALAVTREd 259
Cdd:TIGR01640  79 SNSWRTIECSPPHHPLK--SRGVCINGVLYYLAYTLKT-NPDYFIVSFDVSSERFKEFIPLPCGNSDSVdyLSLINYKG- 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186511645  260 pkiCVAIIQELH----IDVWIAttiESTGAASWSKFLSVELANLYEricLDSWM--NFLVDQKNKVLVYRDGNYwiSNVF 333
Cdd:TIGR01640 155 ---KLAVLKQKKdtnnFDLWVL---NDAGKQEWSKLFTVPIPPLPD---LVDDNflSGFTDKGEIVLCCEDENP--FYIF 223


                  ....*..
gi 186511645  334 LHVVGED 340
Cdd:TIGR01640 224 YYNVGEN 230
F-box_AtFBW1-like cd22157
F-box domain found in Arabidopsis thaliana F-box/WD-40 repeat-containing protein 1 (AtFBW1) ...
 8-45 3.25e-11

F-box domain found in Arabidopsis thaliana F-box/WD-40 repeat-containing protein 1 (AtFBW1) and similar proteins; AtFBW1, also called WD-40-associated F-box protein 1, is an F-box protein that contains four WD-40 repeats, which are separated from each other by a spacer region. Like other F-box proteins, AtFBW1 may be a component of SCF (Skp1 Cdc53 F-box protein) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. This subfamily also contains many F-box only proteins that do not have any WD repeat. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression.


Pssm-ID: 438928  Cd Length: 39  Bit Score: 57.47  E-value: 3.25e-11
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 186511645   8 DLPEDLVMEILARVPTVTLVRLQSTSKRWNVLIEDKRF 45
Cdd:cd22157    2 SLPDDLVEEILSRLPAKSLLRFRCVCKQWNSLISSPSF 39
F-box pfam00646
F-box domain; This domain is approximately 50 amino acids long, and is usually found in the ...
 6-45 2.28e-06

F-box domain; This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression.


Pssm-ID: 425796  Cd Length: 43  Bit Score: 44.07  E-value: 2.28e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 186511645    6 IVDLPEDLVMEILARVPTVTLVRLQSTSKRWNVLIEDKRF 45
Cdd:pfam00646   1 LLDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKL 40
FBOX smart00256
A Receptor for Ubiquitination Targets;
9-45 4.28e-06

A Receptor for Ubiquitination Targets;


Pssm-ID: 197608  Cd Length: 41  Bit Score: 43.19  E-value: 4.28e-06
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 186511645     9 LPEDLVMEILARVPTVTLVRLQSTSKRWNVLIEDKRF 45
Cdd:smart00256   1 LPDEILEEILSKLDPKDLLRLRKVSRKWRSLIDSHDF 37
 
Name Accession Description Interval E-value
FBA_1 pfam07734
F-box associated; Most of these proteins contain pfam00646 at the N terminus, suggesting that ...
 203-362 1.83e-42

F-box associated; Most of these proteins contain pfam00646 at the N terminus, suggesting that they are effectors linked with ubiquitination.


Pssm-ID: 254394  Cd Length: 159  Bit Score: 145.44  E-value: 1.83e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186511645  203 GMSVNGNTYWLASTNKDlTSSSFLLGFDFSTERF-VRVSLPGDHLSDPVFALAVTREDpKICVA--IIQELHIDVWIATT 279
Cdd:pfam07734   1 GVSLKGNTYWLAREKET-NEEDFLLSFDFTTERFgPRLPLPFQSPDLDTVSLSVVREE-KLAVLlqEDDTSKIEIWVTTK 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186511645  280 IESTgAASWSKFLSVELANLYERICLDSWMNFLVDQKNKVLVYRDGNYWISNVFLHVVGEDKCiqVDHHDSVSRCSLVVN 359
Cdd:pfam07734  79 IEPN-AVSWSKFLTVDMPPLPGLFFHFFAGSFFIDEEKKVAVVCDKDKEKKTNTIYIIGEDGY--FKEVDSSYCSPLVCS 155


                  ...
gi 186511645  360 YVP 362
Cdd:pfam07734 156 YVP 158
F_box_assoc_1 TIGR01640
F-box protein interaction domain; This model describes a large family of plant domains, with ...
 106-340 9.47e-36

F-box protein interaction domain; This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.


Pssm-ID: 273726 [Multi-domain]  Cd Length: 230  Bit Score: 130.17  E-value: 9.47e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186511645  106 VFHCDGfLLCTTVDNRLVVSNPCSRDTKWIQPRN---FYKKFDIFALGKSSCNK-YKIMRMDQFYPDRPEFmNYEIYDFN 181
Cdd:TIGR01640   1 VVPCDG-LICFSYGKRLVVWNPSTGQSRWLPTPKsrrSNKESDTYFLGYDPIEKqYKVLCFSDRSGNRNQS-EHQVYTLG 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186511645  182 SNSWRVVGKITDWFIPRcmDRGMSVNGNTYWLASTNKDlTSSSFLLGFDFSTERFVRVSLPGDHLSDPV--FALAVTREd 259
Cdd:TIGR01640  79 SNSWRTIECSPPHHPLK--SRGVCINGVLYYLAYTLKT-NPDYFIVSFDVSSERFKEFIPLPCGNSDSVdyLSLINYKG- 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186511645  260 pkiCVAIIQELH----IDVWIAttiESTGAASWSKFLSVELANLYEricLDSWM--NFLVDQKNKVLVYRDGNYwiSNVF 333
Cdd:TIGR01640 155 ---KLAVLKQKKdtnnFDLWVL---NDAGKQEWSKLFTVPIPPLPD---LVDDNflSGFTDKGEIVLCCEDENP--FYIF 223


                  ....*..
gi 186511645  334 LHVVGED 340
Cdd:TIGR01640 224 YYNVGEN 230
F-box_AtFBW1-like cd22157
F-box domain found in Arabidopsis thaliana F-box/WD-40 repeat-containing protein 1 (AtFBW1) ...
 8-45 3.25e-11

F-box domain found in Arabidopsis thaliana F-box/WD-40 repeat-containing protein 1 (AtFBW1) and similar proteins; AtFBW1, also called WD-40-associated F-box protein 1, is an F-box protein that contains four WD-40 repeats, which are separated from each other by a spacer region. Like other F-box proteins, AtFBW1 may be a component of SCF (Skp1 Cdc53 F-box protein) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. This subfamily also contains many F-box only proteins that do not have any WD repeat. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression.


Pssm-ID: 438928  Cd Length: 39  Bit Score: 57.47  E-value: 3.25e-11
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 186511645   8 DLPEDLVMEILARVPTVTLVRLQSTSKRWNVLIEDKRF 45
Cdd:cd22157    2 SLPDDLVEEILSRLPAKSLLRFRCVCKQWNSLISSPSF 39
F-box pfam00646
F-box domain; This domain is approximately 50 amino acids long, and is usually found in the ...
 6-45 2.28e-06

F-box domain; This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression.


Pssm-ID: 425796  Cd Length: 43  Bit Score: 44.07  E-value: 2.28e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 186511645    6 IVDLPEDLVMEILARVPTVTLVRLQSTSKRWNVLIEDKRF 45
Cdd:pfam00646   1 LLDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKL 40
FBOX smart00256
A Receptor for Ubiquitination Targets;
9-45 4.28e-06

A Receptor for Ubiquitination Targets;


Pssm-ID: 197608  Cd Length: 41  Bit Score: 43.19  E-value: 4.28e-06
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 186511645     9 LPEDLVMEILARVPTVTLVRLQSTSKRWNVLIEDKRF 45
Cdd:smart00256   1 LPDEILEEILSKLDPKDLLRLRKVSRKWRSLIDSHDF 37
F-box_SF cd09917
F-box domain superfamily; This short domain is commonly found at the N-terminus of various ...
 8-41 4.52e-05

F-box domain superfamily; This short domain is commonly found at the N-terminus of various proteins, and typically co-occurs with one or more other conserved domains or motifs, such as leucine rich repeats, WD40 repeats, kelch, tub, spry, and others. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. One of the best researched roles of F-box proteins is their participation in SCF (Skp1-Cul1-F-box protein), a multi-protein complex that functions as a ubiquitin E3 ligase, where the role of the F-box protein is to recruit target substrates. Gene families containing the F-box are found greatly expanded in narrow taxonomic lineages, such as flowering plants and nematodes. In this hierarchical classification, many of the subfamilies are named according to their domain architectures.


Pssm-ID: 438852  Cd Length: 35  Bit Score: 40.12  E-value: 4.52e-05
                         10        20        30
                 ....*....|....*....|....*....|....
gi 186511645   8 DLPEDLVMEILARVPTVTLVRLQSTSKRWNVLIE 41
Cdd:cd09917    2 DLPDEILLKILSYLDPRDLLRLSLVCKRWRELAS 35
F-box-like pfam12937
F-box-like; This is an F-box-like family.
 6-42 1.66e-04

F-box-like; This is an F-box-like family.


Pssm-ID: 463757 [Multi-domain]  Cd Length: 45  Bit Score: 38.62  E-value: 1.66e-04
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 186511645    6 IVDLPEDLVMEILARVPTVTLVRLQSTSKRWNVLIED 42
Cdd:pfam12937   1 LSSLPDEILLQIFSYLDPKDLLRLALVCRRWRELASD 37
F-box_AtGID2-like cd22151
F-box domain found in Arabidopsis thaliana F-box protein GID2 and similar proteins; AtGID2, ...
 9-50 6.10e-04

F-box domain found in Arabidopsis thaliana F-box protein GID2 and similar proteins; AtGID2, also called protein SLEEPY 1, is an essential component of the SCF-type E3 ligase complex, SCF(GID2), a complex that positively regulates the gibberellin signaling pathway. Upon gibberellin treatment, the SCF(GID2) complex mediates the ubiquitination and subsequent degradation of DELLA proteins (GAI, RGA and RGL2), some repressors of the gibberellin pathway, leading to the activation of the pathway. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression.


Pssm-ID: 438922  Cd Length: 44  Bit Score: 37.30  E-value: 6.10e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 186511645   9 LPEDLVMEILARVPTVTLVRLQSTSKRWNVLIEDKRFAEQHF 50
Cdd:cd22151    3 LPDDLLQEIFKRLDPKSLARAACVCRRWRAAARSESLWENAC 44
F-box_AtAFR-like cd22152
F-box domain found in Arabidopsis thaliana protein ATTENUATED FAR-RED RESPONSE (AtAFR) and ...
 9-47 1.05e-03

F-box domain found in Arabidopsis thaliana protein ATTENUATED FAR-RED RESPONSE (AtAFR) and similar proteins; AtAFR, also called SKP1-interacting partner 29 (AtSKIP29), or F-box protein AFR, is a component of SCF (SKP1/ASK-cullin-F-box protein) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. It is part of the phyA-mediated signaling transduction pathway leading to the regulation of gene expression and hypocotyl elongation in response to red and far-red light exposure. This subfamily also includes many other Arabidopsis thaliana SKP1-interacting partner proteins. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression.


Pssm-ID: 438923  Cd Length: 45  Bit Score: 36.39  E-value: 1.05e-03
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 186511645   9 LPEDLVMEILARVPTVTLVRLQSTSKRWNVLIEDKRFAE 47
Cdd:cd22152    5 LPDDIALQCLARVPRSSHPSLSLVSKSWRSLLSSPELFR 43
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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