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Conserved domains on  [gi|15235298|ref|NP_192136|]
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root hair specific 13 [Arabidopsis thaliana]

Protein Classification

pollen Ole e 1 allergen/extensin family protein( domain architecture ID 10471875)

pollen Ole e 1 allergen/extensin family protein similar to Olea europaea major pollen allergen Ole e 1 that may be involved in recognition between pollen-stigma and\n pollen tube-style cells

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Pollen_Ole_e_1 pfam01190
Pollen protein Ole e 1 like;
42-129 7.90e-19

Pollen protein Ole e 1 like;


:

Pssm-ID: 460103 [Multi-domain]  Cd Length: 94  Bit Score: 76.24  E-value: 7.90e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235298    42 VEGIIKCKSG-------GKTYPIQGATARIACvKVDAYGNELVPISILSSKTDAKGYFIATIFPSQLRAGRTVTKCKTYL 114
Cdd:pfam01190   1 VEGLVYCDSCsrgsfslKGAKPLPGAKVRVTC-KNGKDGTKGEVTSYASGTTDKNGYFKVELPGFDEKDDLKIKECKAKL 79

                          90
                  ....*....|....*
gi 15235298   115 YKSPLADCDFPTDVN 129
Cdd:pfam01190  80 VSSPDPTCNVPTNVN 94
 
Name Accession Description Interval E-value
Pollen_Ole_e_1 pfam01190
Pollen protein Ole e 1 like;
42-129 7.90e-19

Pollen protein Ole e 1 like;


Pssm-ID: 460103 [Multi-domain]  Cd Length: 94  Bit Score: 76.24  E-value: 7.90e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235298    42 VEGIIKCKSG-------GKTYPIQGATARIACvKVDAYGNELVPISILSSKTDAKGYFIATIFPSQLRAGRTVTKCKTYL 114
Cdd:pfam01190   1 VEGLVYCDSCsrgsfslKGAKPLPGAKVRVTC-KNGKDGTKGEVTSYASGTTDKNGYFKVELPGFDEKDDLKIKECKAKL 79

                          90
                  ....*....|....*
gi 15235298   115 YKSPLADCDFPTDVN 129
Cdd:pfam01190  80 VSSPDPTCNVPTNVN 94
 
Name Accession Description Interval E-value
Pollen_Ole_e_1 pfam01190
Pollen protein Ole e 1 like;
42-129 7.90e-19

Pollen protein Ole e 1 like;


Pssm-ID: 460103 [Multi-domain]  Cd Length: 94  Bit Score: 76.24  E-value: 7.90e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15235298    42 VEGIIKCKSG-------GKTYPIQGATARIACvKVDAYGNELVPISILSSKTDAKGYFIATIFPSQLRAGRTVTKCKTYL 114
Cdd:pfam01190   1 VEGLVYCDSCsrgsfslKGAKPLPGAKVRVTC-KNGKDGTKGEVTSYASGTTDKNGYFKVELPGFDEKDDLKIKECKAKL 79

                          90
                  ....*....|....*
gi 15235298   115 YKSPLADCDFPTDVN 129
Cdd:pfam01190  80 VSSPDPTCNVPTNVN 94
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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