NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|15228874|ref|NP_191186|]
View 

WEB family protein (DUF827) [Arabidopsis thaliana]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
WEMBL super family cl25644
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required ...
 306-365 7.70e-05

Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required for the chloroplast avoidance response under high intensity blue light. This avoidance response consists in the relocation of chloroplasts on the anticlinal side of exposed cells. Acts in association with PMI2 to maintain the velocity of chloroplast photo-relocation movement via the regulation of cp-actin filaments. Thus several member-sequences are described as "myosin heavy chain-like".


The actual alignment was detected with superfamily member pfam05701:

Pssm-ID: 461718 [Multi-domain]  Cd Length: 562  Bit Score: 45.02  E-value: 7.70e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15228874   306 QMNKELSTNVSRIEI--------LRKLEEANEEVKQSKQALEVALNRVEIASVKQLEAEEAFRQWNIE 365
Cdd:pfam05701 491 LANKRVAEAVSQIEEakeselrsLEKLEEVNREMEERKEALKIALEKAEKAKEGKLAAEQELRKWRAE 558
 
Name Accession Description Interval E-value
WEMBL pfam05701
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required ...
 306-365 7.70e-05

Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required for the chloroplast avoidance response under high intensity blue light. This avoidance response consists in the relocation of chloroplasts on the anticlinal side of exposed cells. Acts in association with PMI2 to maintain the velocity of chloroplast photo-relocation movement via the regulation of cp-actin filaments. Thus several member-sequences are described as "myosin heavy chain-like".


Pssm-ID: 461718 [Multi-domain]  Cd Length: 562  Bit Score: 45.02  E-value: 7.70e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15228874   306 QMNKELSTNVSRIEI--------LRKLEEANEEVKQSKQALEVALNRVEIASVKQLEAEEAFRQWNIE 365
Cdd:pfam05701 491 LANKRVAEAVSQIEEakeselrsLEKLEEVNREMEERKEALKIALEKAEKAKEGKLAAEQELRKWRAE 558
 
Name Accession Description Interval E-value
WEMBL pfam05701
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required ...
 306-365 7.70e-05

Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required for the chloroplast avoidance response under high intensity blue light. This avoidance response consists in the relocation of chloroplasts on the anticlinal side of exposed cells. Acts in association with PMI2 to maintain the velocity of chloroplast photo-relocation movement via the regulation of cp-actin filaments. Thus several member-sequences are described as "myosin heavy chain-like".


Pssm-ID: 461718 [Multi-domain]  Cd Length: 562  Bit Score: 45.02  E-value: 7.70e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 15228874   306 QMNKELSTNVSRIEI--------LRKLEEANEEVKQSKQALEVALNRVEIASVKQLEAEEAFRQWNIE 365
Cdd:pfam05701 491 LANKRVAEAVSQIEEakeselrsLEKLEEVNREMEERKEALKIALEKAEKAKEGKLAAEQELRKWRAE 558
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH