NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|15232539|ref|NP_191020|]
View 

Plant calmodulin-binding protein-like protein [Arabidopsis thaliana]

Protein Classification

CaM_binding domain-containing protein( domain architecture ID 10660603)

CaM_binding domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
CaM_binding smart01054
Plant calmodulin-binding domain; The sequences featured in this family are found repeated in a ...
 297-416 1.75e-41

Plant calmodulin-binding domain; The sequences featured in this family are found repeated in a number of plant calmodulin-binding proteins, and are thought to constitute the calmodulin-binding domains.. Binding of the proteins to calmodulin depends on the presence of calcium ions.. These proteins are thought to be involved in various processes, such as plant defence responses.and stolonisation or tuberization.


:

Pssm-ID: 214998  Cd Length: 115  Bit Score: 142.54  E-value: 1.75e-41
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232539    297 KHESKEAEDWKEADGEKVKERIKLVLKTEEALLsLAQKPCNreecIEDCRRLNPREPNYIQTTVEPSNETVDLRHQDMDE 376
Cdd:smart01054   1 KAEKKEFRRGKIEDPKPEGERPRKWKFLKKVIL-LKRFVKS----LEDKRRLNPREPNVLPTEVEPEAEKVVLRHQDVGE 75

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|
gi 15232539    377 RKKAEEWMIDYALQHTVSKLVVERKKDVALLVEAFETTVP 416
Cdd:smart01054  76 KKNSEEWMFDYALRETVSKLAPARKKKVKLLVGAFETVIS 115
 
Name Accession Description Interval E-value
CaM_binding smart01054
Plant calmodulin-binding domain; The sequences featured in this family are found repeated in a ...
 297-416 1.75e-41

Plant calmodulin-binding domain; The sequences featured in this family are found repeated in a number of plant calmodulin-binding proteins, and are thought to constitute the calmodulin-binding domains.. Binding of the proteins to calmodulin depends on the presence of calcium ions.. These proteins are thought to be involved in various processes, such as plant defence responses.and stolonisation or tuberization.


Pssm-ID: 214998  Cd Length: 115  Bit Score: 142.54  E-value: 1.75e-41
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232539    297 KHESKEAEDWKEADGEKVKERIKLVLKTEEALLsLAQKPCNreecIEDCRRLNPREPNYIQTTVEPSNETVDLRHQDMDE 376
Cdd:smart01054   1 KAEKKEFRRGKIEDPKPEGERPRKWKFLKKVIL-LKRFVKS----LEDKRRLNPREPNVLPTEVEPEAEKVVLRHQDVGE 75

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|
gi 15232539    377 RKKAEEWMIDYALQHTVSKLVVERKKDVALLVEAFETTVP 416
Cdd:smart01054  76 KKNSEEWMFDYALRETVSKLAPARKKKVKLLVGAFETVIS 115
CaM_binding pfam07839
Plant calmodulin-binding domain; The sequences featured in this family are found repeated in a ...
 297-416 8.55e-33

Plant calmodulin-binding domain; The sequences featured in this family are found repeated in a number of plant calmodulin-binding proteins, and are thought to constitute the calmodulin-binding domains. Binding of the proteins to calmodulin depends on the presence of calcium ions. These proteins are thought to be involved in various processes, such as plant defence responses and stolonization or tuberization.


Pssm-ID: 462284 [Multi-domain]  Cd Length: 118  Bit Score: 119.70  E-value: 8.55e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232539   297 KHESKEAEDWKEADGEKVKERIKLVLKTEEALLSLAQKpcNREECIEDCRRLNPREPNYIQTTVEPSNETVDLRHQDMDE 376
Cdd:pfam07839   1 KLRFKRGKVKDLQSEEKSWNSPKKLIFRKRFKALDNQN--SKGERRESLRRFNPREPRYLPLEPDPEAEKVVLRHQDVQE 78

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 15232539   377 RKKAEEWMIDYALQHTVSKLVVERKKDVALLVEAFETTVP 416
Cdd:pfam07839  79 KKNAEEWMLNNVIEETASKLAEARKSKVKALVGAFETVIS 118
 
Name Accession Description Interval E-value
CaM_binding smart01054
Plant calmodulin-binding domain; The sequences featured in this family are found repeated in a ...
 297-416 1.75e-41

Plant calmodulin-binding domain; The sequences featured in this family are found repeated in a number of plant calmodulin-binding proteins, and are thought to constitute the calmodulin-binding domains.. Binding of the proteins to calmodulin depends on the presence of calcium ions.. These proteins are thought to be involved in various processes, such as plant defence responses.and stolonisation or tuberization.


Pssm-ID: 214998  Cd Length: 115  Bit Score: 142.54  E-value: 1.75e-41
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232539    297 KHESKEAEDWKEADGEKVKERIKLVLKTEEALLsLAQKPCNreecIEDCRRLNPREPNYIQTTVEPSNETVDLRHQDMDE 376
Cdd:smart01054   1 KAEKKEFRRGKIEDPKPEGERPRKWKFLKKVIL-LKRFVKS----LEDKRRLNPREPNVLPTEVEPEAEKVVLRHQDVGE 75

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|
gi 15232539    377 RKKAEEWMIDYALQHTVSKLVVERKKDVALLVEAFETTVP 416
Cdd:smart01054  76 KKNSEEWMFDYALRETVSKLAPARKKKVKLLVGAFETVIS 115
CaM_binding pfam07839
Plant calmodulin-binding domain; The sequences featured in this family are found repeated in a ...
 297-416 8.55e-33

Plant calmodulin-binding domain; The sequences featured in this family are found repeated in a number of plant calmodulin-binding proteins, and are thought to constitute the calmodulin-binding domains. Binding of the proteins to calmodulin depends on the presence of calcium ions. These proteins are thought to be involved in various processes, such as plant defence responses and stolonization or tuberization.


Pssm-ID: 462284 [Multi-domain]  Cd Length: 118  Bit Score: 119.70  E-value: 8.55e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232539   297 KHESKEAEDWKEADGEKVKERIKLVLKTEEALLSLAQKpcNREECIEDCRRLNPREPNYIQTTVEPSNETVDLRHQDMDE 376
Cdd:pfam07839   1 KLRFKRGKVKDLQSEEKSWNSPKKLIFRKRFKALDNQN--SKGERRESLRRFNPREPRYLPLEPDPEAEKVVLRHQDVQE 78

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 15232539   377 RKKAEEWMIDYALQHTVSKLVVERKKDVALLVEAFETTVP 416
Cdd:pfam07839  79 KKNAEEWMLNNVIEETASKLAEARKSKVKALVGAFETVIS 118
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH