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Conserved domains on  [gi|15229520|ref|NP_189022|]
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selenium-binding protein 3 [Arabidopsis thaliana]

Protein Classification

selenium-binding family protein( domain architecture ID 10529529)

selenium-binding family protein similar to human methanethiol oxidase (also called selenium-binding protein 1 or 56 kDa selenium-binding protein) that catalyzes the oxidation of methanethiol, an organosulfur compound known to be produced in substantial amounts by gut bacteria, and may be involved in intra-Golgi protein transport

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SBP56 pfam05694
56kDa selenium binding protein (SBP56); This family consists of several eukaryotic selenium ...
 13-480 0e+00

56kDa selenium binding protein (SBP56); This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport. The Lotus japonicus homolog of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins, in vesicular Golgi transport.


:

Pssm-ID: 461716  Cd Length: 453  Bit Score: 860.47  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15229520    13 CKSGPGYATPLLAMSGPREKLIYVAAIYTGTGQAKPDYLATVDVEPSSSTYSSVIHRLPMPYLEDELHHSGWNSCSSCYG 92
Cdd:pfam05694   1 CKPGPGYASPLDAMKAPREKLAYVAALYPGTGINKPDYLATVDVDPKSPTYGQVVHRLPMPNIGDELHHFGWNACSSCHG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15229520    93 DSSCERRYLILPSLLSGRIYVIDTKTNPREPSLHKFVDPAEVLEKTGLAYPHQPHCLASGDVLVSCLGDEDGNAEGsGFL 172
Cdd:pfam05694  81 DPSKERRYLIVPGLRSSRIYIVDTKTDPRAPRLVKVIEPEEVAEKTGYSRPHTVHCLPDGEIYISALGDADGNGPG-GFL 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15229520   173 LLDSE-FNIKGRWEKDGNSPLYGYDFWYQPRHKTMISTSWGAPAAFTKGFDLKDVSDGLYGKHLHVYSWPQGELKQILDL 251
Cdd:pfam05694 160 LLDHEtFEVKGRWEKDRGPQLFGYDFWYQPRHNVMISSEWGAPNTFEDGFNPEDLEDGLYGHRLHFWDWSTRKHKQTIDL 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15229520   252 GDTGLLPLEVRFLHEPDKATGFAGCALSSTLVRFFKNDDETWSHEVAISVEPLKVENWILPEMPGLITDFLISLDDRFLY 331
Cdd:pfam05694 240 GEEGQMPLELRFLHDPTKAHGFVGCALSSSIWRWYKNDGGKWAAEKVIEIPAEPVEGWILPPMPPLVTDILISLDDRFLY 319

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15229520   332 CSNWLHGDIRQYNIEDPKTPVLTGQIHVGGLVQKGslvlalgeegkafqfDVPKIKGQRLRGGPQMFQLSLDGKRLYVTN 411
Cdd:pfam05694 320 VSCWLHGDLRQYDISDPFNPRLTGQVRLGGIIRRA---------------PHPAVKGRRLNGGPQMVQLSLDGKRLYVTN 384

                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15229520   412 SLFSVWDRQFYPELVEKGSHMLQIDVDTDKGGLSINPNFFVDFGTEPDGPSLAHEMRYPGGDCTSDIWV 480
Cdd:pfam05694 385 SLYSSWDDQFYPDGVKKGGWMLKIDVDPETGGLSLNPNFFVDFGKEPDGPARAHEMRYPGGDCSSDIWC 453
 
Name Accession Description Interval E-value
SBP56 pfam05694
56kDa selenium binding protein (SBP56); This family consists of several eukaryotic selenium ...
 13-480 0e+00

56kDa selenium binding protein (SBP56); This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport. The Lotus japonicus homolog of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins, in vesicular Golgi transport.


Pssm-ID: 461716  Cd Length: 453  Bit Score: 860.47  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15229520    13 CKSGPGYATPLLAMSGPREKLIYVAAIYTGTGQAKPDYLATVDVEPSSSTYSSVIHRLPMPYLEDELHHSGWNSCSSCYG 92
Cdd:pfam05694   1 CKPGPGYASPLDAMKAPREKLAYVAALYPGTGINKPDYLATVDVDPKSPTYGQVVHRLPMPNIGDELHHFGWNACSSCHG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15229520    93 DSSCERRYLILPSLLSGRIYVIDTKTNPREPSLHKFVDPAEVLEKTGLAYPHQPHCLASGDVLVSCLGDEDGNAEGsGFL 172
Cdd:pfam05694  81 DPSKERRYLIVPGLRSSRIYIVDTKTDPRAPRLVKVIEPEEVAEKTGYSRPHTVHCLPDGEIYISALGDADGNGPG-GFL 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15229520   173 LLDSE-FNIKGRWEKDGNSPLYGYDFWYQPRHKTMISTSWGAPAAFTKGFDLKDVSDGLYGKHLHVYSWPQGELKQILDL 251
Cdd:pfam05694 160 LLDHEtFEVKGRWEKDRGPQLFGYDFWYQPRHNVMISSEWGAPNTFEDGFNPEDLEDGLYGHRLHFWDWSTRKHKQTIDL 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15229520   252 GDTGLLPLEVRFLHEPDKATGFAGCALSSTLVRFFKNDDETWSHEVAISVEPLKVENWILPEMPGLITDFLISLDDRFLY 331
Cdd:pfam05694 240 GEEGQMPLELRFLHDPTKAHGFVGCALSSSIWRWYKNDGGKWAAEKVIEIPAEPVEGWILPPMPPLVTDILISLDDRFLY 319

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15229520   332 CSNWLHGDIRQYNIEDPKTPVLTGQIHVGGLVQKGslvlalgeegkafqfDVPKIKGQRLRGGPQMFQLSLDGKRLYVTN 411
Cdd:pfam05694 320 VSCWLHGDLRQYDISDPFNPRLTGQVRLGGIIRRA---------------PHPAVKGRRLNGGPQMVQLSLDGKRLYVTN 384

                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15229520   412 SLFSVWDRQFYPELVEKGSHMLQIDVDTDKGGLSINPNFFVDFGTEPDGPSLAHEMRYPGGDCTSDIWV 480
Cdd:pfam05694 385 SLYSSWDDQFYPDGVKKGGWMLKIDVDPETGGLSLNPNFFVDFGKEPDGPARAHEMRYPGGDCSSDIWC 453
YncE COG3391
DNA-binding beta-propeller fold protein YncE [General function prediction only];
318-449 3.10e-03

DNA-binding beta-propeller fold protein YncE [General function prediction only];


Pssm-ID: 442618 [Multi-domain]  Cd Length: 237  Bit Score: 39.29  E-value: 3.10e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15229520 318 ITDFLISLDDRFLYCSNWLHGDIRQYnieDPKTPVLTGQIHVG----GLV---QKGSLVLALGEEGKAFQFDVP--KIKG 388
Cdd:COG3391  70 ADGADAGADGRRLYVANSGSGRVSVI---DLATGKVVATIPVGggprGLAvdpDGGRLYVADSGNGRVSVIDTAtgKVVA 146

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15229520 389 Q-RLRGGPQMFQLSLDGKRLYVTNS-------LFSVWDrqfypelVEKGSHMLQIDVDTDKGGLSINPN 449
Cdd:COG3391 147 TiPVGAGPHGIAVDPDGKRLYVANSgsntvsvIVSVID-------TATGKVVATIPVGGGPVGVAVSPD 208
 
Name Accession Description Interval E-value
SBP56 pfam05694
56kDa selenium binding protein (SBP56); This family consists of several eukaryotic selenium ...
 13-480 0e+00

56kDa selenium binding protein (SBP56); This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport. The Lotus japonicus homolog of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins, in vesicular Golgi transport.


Pssm-ID: 461716  Cd Length: 453  Bit Score: 860.47  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15229520    13 CKSGPGYATPLLAMSGPREKLIYVAAIYTGTGQAKPDYLATVDVEPSSSTYSSVIHRLPMPYLEDELHHSGWNSCSSCYG 92
Cdd:pfam05694   1 CKPGPGYASPLDAMKAPREKLAYVAALYPGTGINKPDYLATVDVDPKSPTYGQVVHRLPMPNIGDELHHFGWNACSSCHG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15229520    93 DSSCERRYLILPSLLSGRIYVIDTKTNPREPSLHKFVDPAEVLEKTGLAYPHQPHCLASGDVLVSCLGDEDGNAEGsGFL 172
Cdd:pfam05694  81 DPSKERRYLIVPGLRSSRIYIVDTKTDPRAPRLVKVIEPEEVAEKTGYSRPHTVHCLPDGEIYISALGDADGNGPG-GFL 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15229520   173 LLDSE-FNIKGRWEKDGNSPLYGYDFWYQPRHKTMISTSWGAPAAFTKGFDLKDVSDGLYGKHLHVYSWPQGELKQILDL 251
Cdd:pfam05694 160 LLDHEtFEVKGRWEKDRGPQLFGYDFWYQPRHNVMISSEWGAPNTFEDGFNPEDLEDGLYGHRLHFWDWSTRKHKQTIDL 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15229520   252 GDTGLLPLEVRFLHEPDKATGFAGCALSSTLVRFFKNDDETWSHEVAISVEPLKVENWILPEMPGLITDFLISLDDRFLY 331
Cdd:pfam05694 240 GEEGQMPLELRFLHDPTKAHGFVGCALSSSIWRWYKNDGGKWAAEKVIEIPAEPVEGWILPPMPPLVTDILISLDDRFLY 319

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15229520   332 CSNWLHGDIRQYNIEDPKTPVLTGQIHVGGLVQKGslvlalgeegkafqfDVPKIKGQRLRGGPQMFQLSLDGKRLYVTN 411
Cdd:pfam05694 320 VSCWLHGDLRQYDISDPFNPRLTGQVRLGGIIRRA---------------PHPAVKGRRLNGGPQMVQLSLDGKRLYVTN 384

                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15229520   412 SLFSVWDRQFYPELVEKGSHMLQIDVDTDKGGLSINPNFFVDFGTEPDGPSLAHEMRYPGGDCTSDIWV 480
Cdd:pfam05694 385 SLYSSWDDQFYPDGVKKGGWMLKIDVDPETGGLSLNPNFFVDFGKEPDGPARAHEMRYPGGDCSSDIWC 453
YncE COG3391
DNA-binding beta-propeller fold protein YncE [General function prediction only];
318-449 3.10e-03

DNA-binding beta-propeller fold protein YncE [General function prediction only];


Pssm-ID: 442618 [Multi-domain]  Cd Length: 237  Bit Score: 39.29  E-value: 3.10e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15229520 318 ITDFLISLDDRFLYCSNWLHGDIRQYnieDPKTPVLTGQIHVG----GLV---QKGSLVLALGEEGKAFQFDVP--KIKG 388
Cdd:COG3391  70 ADGADAGADGRRLYVANSGSGRVSVI---DLATGKVVATIPVGggprGLAvdpDGGRLYVADSGNGRVSVIDTAtgKVVA 146

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15229520 389 Q-RLRGGPQMFQLSLDGKRLYVTNS-------LFSVWDrqfypelVEKGSHMLQIDVDTDKGGLSINPN 449
Cdd:COG3391 147 TiPVGAGPHGIAVDPDGKRLYVANSgsntvsvIVSVID-------TATGKVVATIPVGGGPVGVAVSPD 208
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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