|
Name |
Accession |
Description |
Interval |
E-value |
| PLN03187 |
PLN03187 |
meiotic recombination protein DMC1 homolog; Provisional |
1-344 |
0e+00 |
|
meiotic recombination protein DMC1 homolog; Provisional
Pssm-ID: 215620 [Multi-domain] Cd Length: 344 Bit Score: 659.93 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686826 1 MMASLKAEETSQMQLVEREENDEDEDLFEMIDKLIAQGINAGDVKKLQEAGIHTCNGLMMHTKKNLTGIKGLSEAKVDKI 80
Cdd:PLN03187 1 MSASAQADEGAQLQLVEAEEVDEEEDLFESIDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKKNLTGIKGLSEAKVDKI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686826 81 CEAAEKIVNFGYMTGSDALIKRKSVVKITTGCQALDDLLGGGIETSAITEAFGEFRSGKTQLAHTLCVTTQLPTNMKGGN 160
Cdd:PLN03187 81 CEAAEKLLNQGFITGSDALLKRKSVVRITTGSQALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGN 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686826 161 GKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRILIVDSIIALFRVDFTG 240
Cdd:PLN03187 161 GKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFTG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686826 241 RGELADRQQKLAQMLSRLIKIAEEFNVAVYMTNQVIADPGGGMFISDPKKPAGGHVLAHAATIRLLFRKGKGDTRVCKVY 320
Cdd:PLN03187 241 RGELAERQQKLAQMLSRLTKIAEEFNVAVYMTNQVIADPGGGMFISDPKKPAGGHVLAHAATIRLMLRKGKGEQRVCKVF 320
|
330 340
....*....|....*....|....
gi 30686826 321 DAPNLAEAEASFQITQGGIADAKD 344
Cdd:PLN03187 321 DAPNLPEAEAEFQITSGGIMDAKD 344
|
|
| recomb_DMC1 |
TIGR02238 |
meiotic recombinase Dmc1; This model describes DMC1, a subfamily of a larger family of DNA ... |
31-342 |
0e+00 |
|
meiotic recombinase Dmc1; This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Pssm-ID: 131292 [Multi-domain] Cd Length: 313 Bit Score: 582.89 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686826 31 IDKLIAQGINAGDVKKLQEAGIHTCNGLMMHTKKNLTGIKGLSEAKVDKICEAAEKIVNFGYMTGSDALIKRKSVVKITT 110
Cdd:TIGR02238 1 IDKLQAHGINAADIKKLKSAGICTVNGVIMTTRRALCKIKGLSEAKVDKIKEAASKIINPGFITAFEISQKRKKVLKITT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686826 111 GCQALDDLLGGGIETSAITEAFGEFRSGKTQLAHTLCVTTQLPTNMKGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGA 190
Cdd:TIGR02238 81 GSQALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDPDA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686826 191 VLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRILIVDSIIALFRVDFTGRGELADRQQKLAQMLSRLIKIAEEFNVAVY 270
Cdd:TIGR02238 161 VLDNILYARAYTSEHQMELLDYLAAKFSEEPFRLLIVDSIMALFRVDFSGRGELSERQQKLAQMLSRLNKISEEFNVAVF 240
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 30686826 271 MTNQVIADPGG-GMFISDPKKPAGGHVLAHAATIRLLFRKGKGDTRVCKVYDAPNLAEAEASFQITQGGIADA 342
Cdd:TIGR02238 241 VTNQVQADPGAtMTFIADPKKPIGGHVLAHASTTRILLRKGRGEERVAKLYDSPDMPEAEASFQITEGGIADA 313
|
|
| PTZ00035 |
PTZ00035 |
Rad51 protein; Provisional |
31-344 |
0e+00 |
|
Rad51 protein; Provisional
Pssm-ID: 185407 [Multi-domain] Cd Length: 337 Bit Score: 549.60 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686826 31 IDKLIAQGINAGDVKKLQEAGIHTCNGLMMHTKKNLTGIKGLSEAKVDKICEAAEKIVNFGYMTGSDALIKRKSVVKITT 110
Cdd:PTZ00035 23 IEKLQSAGINAADIKKLKEAGICTVESVAYATKKDLCNIKGISEAKVEKIKEAASKLVPMGFISATEYLEARKNIIRITT 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686826 111 GCQALDDLLGGGIETSAITEAFGEFRSGKTQLAHTLCVTTQLPTNMKGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGA 190
Cdd:PTZ00035 103 GSTQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERFGLDPED 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686826 191 VLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRILIVDSIIALFRVDFTGRGELADRQQKLAQMLSRLIKIAEEFNVAVY 270
Cdd:PTZ00035 183 VLDNIAYARAYNHEHQMQLLSQAAAKMAEERFALLIVDSATALFRVDYSGRGELAERQQHLGKFLRALQKLADEFNVAVV 262
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 30686826 271 MTNQVIADPGGG-MFISDPKKPAGGHVLAHAATIRLLFRKGKGDTRVCKVYDAPNLAEAEASFQITQGGIADAKD 344
Cdd:PTZ00035 263 ITNQVMADVDGAsMFVADPKKPIGGHIIAHASTTRLSLRKGRGEQRICKIYDSPNLPESEAVFAISEGGIIDAKD 337
|
|
| DMC1 |
cd19514 |
homologous-pairing protein DMC1; DMC1 has a central role in homologous recombination in ... |
108-341 |
1.00e-168 |
|
homologous-pairing protein DMC1; DMC1 has a central role in homologous recombination in meiosis. It assembles at the sites of programmed DNA double-strand breaks and carries out a search for allelic DNA sequences located on homologous chromatids. It forms octameric rings.
Pssm-ID: 410922 [Multi-domain] Cd Length: 236 Bit Score: 468.76 E-value: 1.00e-168
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686826 108 ITTGCQALDDLLGGGIETSAITEAFGEFRSGKTQLAHTLCVTTQLPTNMKGGNGKVAYIDTEGTFRPDRIVPIAERFGMD 187
Cdd:cd19514 1 ISTGSTELDKLLGGGIESMSITEVFGEFRTGKTQLSHTLCVTAQLPGSMGGGGGKVAYIDTEGTFRPDRIRPIAERFGVD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686826 188 PGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEP-FRILIVDSIIALFRVDFTGRGELADRQQKLAQMLSRLIKIAEEFN 266
Cdd:cd19514 81 HDAVLDNILYARAYTSEHQMELLDYVAAKFHEEAvFRLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYN 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 30686826 267 VAVYMTNQVIADPGGGM-FISDPKKPAGGHVLAHAATIRLLFRKGKGDTRVCKVYDAPNLAEAEASFQITQGGIAD 341
Cdd:cd19514 161 VAVFITNQVTADPGAAMtFQADPKKPIGGHILAHASTTRISLRKGRGEERIAKIYDSPDLPENEATFAITAGGIAD 236
|
|
| Rad51 |
pfam08423 |
Rad51; Rad51 is a DNA repair and recombination protein and is a homolog of the bacterial ... |
91-342 |
7.65e-163 |
|
Rad51; Rad51 is a DNA repair and recombination protein and is a homolog of the bacterial ATPase RecA protein.
Pssm-ID: 462471 [Multi-domain] Cd Length: 255 Bit Score: 454.84 E-value: 7.65e-163
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686826 91 GYMTGSDALIKRKSVVKITTGCQALDDLLGGGIETSAITEAFGEFRSGKTQLAHTLCVTTQLPTNMKGGNGKVAYIDTEG 170
Cdd:pfam08423 2 GFTTATELHQRRSELIQITTGSKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLCVTCQLPLEMGGGEGKALYIDTEG 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686826 171 TFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRILIVDSIIALFRVDFTGRGELADRQQK 250
Cdd:pfam08423 82 TFRPERLVAIAERYGLDPEDVLDNVAYARAYNSEHQMQLLQQAAAMMSESRFALLIVDSATALYRTDFSGRGELAERQQH 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686826 251 LAQMLSRLIKIAEEFNVAVYMTNQVIADPGG--GMFISDPKKPAGGHVLAHAATIRLLFRKGKGDTRVCKVYDAPNLAEA 328
Cdd:pfam08423 162 LAKFLRTLQRLADEFGVAVVITNQVVAQVDGaaGMFSGDPKKPIGGHIMAHASTTRLSLRKGRGEQRICKIYDSPCLPES 241
|
250
....*....|....
gi 30686826 329 EASFQITQGGIADA 342
Cdd:pfam08423 242 EAVFAIGSGGIIDP 255
|
|
| recomb_RAD51 |
TIGR02239 |
DNA repair protein RAD51; This eukaryotic sequence family consists of RAD51, a protein ... |
31-344 |
9.60e-156 |
|
DNA repair protein RAD51; This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Pssm-ID: 274048 [Multi-domain] Cd Length: 316 Bit Score: 439.16 E-value: 9.60e-156
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686826 31 IDKLIAQGINAGDVKKLQEAGIHTCNGLMMHTKKNLTGIKGLSEAKVDKICEAAEKIVNFGYMTGSDALIKRKSVVKITT 110
Cdd:TIGR02239 1 IEKLEGNGITAADIKKLQEAGLHTVESVAYAPKKQLLEIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRQEVIQLTT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686826 111 GCQALDDLLGGGIETSAITEAFGEFRSGKTQLAHTLCVTTQLPTNMKGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGA 190
Cdd:TIGR02239 81 GSKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAERYGLNPED 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686826 191 VLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRILIVDSIIALFRVDFTGRGELADRQQKLAQMLSRLIKIAEEFNVAVY 270
Cdd:TIGR02239 161 VLDNVAYARAYNTDHQLQLLQQAAAMMSESRFALLIVDSATALYRTDFSGRGELSARQMHLARFLRSLQRLADEFGVAVV 240
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 30686826 271 MTNQVIADPGG--GMFISDPKKPAGGHVLAHAATIRLLFRKGKGDTRVCKVYDAPNLAEAEASFQITQGGIADAKD 344
Cdd:TIGR02239 241 ITNQVVAQVDGagSMFAGDPKKPIGGNIMAHASTTRLSLRKGRGEQRICKIYDSPCLPESEAMFAIYEDGIGDPKE 316
|
|
| PLN03186 |
PLN03186 |
DNA repair protein RAD51 homolog; Provisional |
31-344 |
1.02e-154 |
|
DNA repair protein RAD51 homolog; Provisional
Pssm-ID: 178728 [Multi-domain] Cd Length: 342 Bit Score: 437.63 E-value: 1.02e-154
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686826 31 IDKLIAQGINAGDVKKLQEAGIHTCNGLMMHTKKNLTGIKGLSEAKVDKICEAAEKIVNFGYMTGSDALIKRKSVVKITT 110
Cdd:PLN03186 28 IEQLQASGIAALDIKKLKDAGIHTVESLAYAPKKDLLQIKGISEAKVEKILEAASKLVPLGFTTASQLHAQRQEIIQITT 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686826 111 GCQALDDLLGGGIETSAITEAFGEFRSGKTQLAHTLCVTTQLPTNMKGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGA 190
Cdd:PLN03186 108 GSRELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFGLNGAD 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686826 191 VLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRILIVDSIIALFRVDFTGRGELADRQQKLAQMLSRLIKIAEEFNVAVY 270
Cdd:PLN03186 188 VLENVAYARAYNTDHQSELLLEAASMMAETRFALMIVDSATALYRTEFSGRGELSARQMHLGKFLRSLQRLADEFGVAVV 267
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 30686826 271 MTNQVIADPGGGMFISDPK-KPAGGHVLAHAATIRLLFRKGKGDTRVCKVYDAPNLAEAEASFQITQGGIADAKD 344
Cdd:PLN03186 268 ITNQVVAQVDGSAFFAGPQlKPIGGNIMAHASTTRLALRKGRGENRICKVISSPCLPEAEARFSISSEGVTDVKD 342
|
|
| Rad51 |
cd19513 |
RAD51D recombinase; RAD51 recombinase plays an essential role in DNA repair by homologous ... |
108-341 |
7.48e-133 |
|
RAD51D recombinase; RAD51 recombinase plays an essential role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51 is recruited to the break site with the help of its paralogs, RAD51D, RAD51B, RAD51C, XRCC3, and XRCC2, where it forms long helical polymers which wrap around the ssDNA tail at the break which leads to pairing and strand invasion.
Pssm-ID: 410921 [Multi-domain] Cd Length: 235 Bit Score: 378.20 E-value: 7.48e-133
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686826 108 ITTGCQALDDLLGGGIETSAITEAFGEFRSGKTQLAHTLCVTTQLPTNMKGGNGKVAYIDTEGTFRPDRIVPIAERFGMD 187
Cdd:cd19513 1 ITTGSKELDKLLGGGIETGSITELFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAERYGLN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686826 188 PGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRILIVDSIIALFRVDFTGRGELADRQQKLAQMLSRLIKIAEEFNV 267
Cdd:cd19513 81 GEDVLDNVAYARAYNTDHQMQLLIQASAMMAESRYALLIVDSATALYRTDYSGRGELSARQMHLAKFLRMLQRLADEFGV 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 30686826 268 AVYMTNQVIADP-GGGMFISDPKKPAGGHVLAHAATIRLLFRKGKGDTRVCKVYDAPNLAEAEASFQITQGGIAD 341
Cdd:cd19513 161 AVVITNQVVAQVdGAAMFAGDPKKPIGGNIMAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAVFAITEDGIGD 235
|
|
| radA |
PRK04301 |
DNA repair and recombination protein RadA; Validated |
44-342 |
8.75e-131 |
|
DNA repair and recombination protein RadA; Validated
Pssm-ID: 235273 [Multi-domain] Cd Length: 317 Bit Score: 376.14 E-value: 8.75e-131
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686826 44 VKKLQEAGIHTCNGLMMHTKKNLTGIKGLSEAKVDKICEAAEKIVNFG-YMTGSDALIKRKSVVKITTGCQALDDLLGGG 122
Cdd:PRK04301 19 AEKLREAGYDTVEAIAVASPKELSEAAGIGESTAAKIIEAAREAADIGgFETALEVLERRKNVGKITTGSKELDELLGGG 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686826 123 IETSAITEAFGEFRSGKTQLAHTLCVTTQLPTNMKGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYT 202
Cdd:PRK04301 99 IETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEALGLDPDEVLDNIHVARAYN 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686826 203 YEHQYnLLLGLAAKMSEE--PFRILIVDSIIALFRVDFTGRGELADRQQKLAQMLSRLIKIAEEFNVAVYMTNQVIADPg 280
Cdd:PRK04301 179 SDHQM-LLAEKAEELIKEgeNIKLVIVDSLTAHFRAEYVGRGNLAERQQKLNKHLHDLLRLADLYNAAVVVTNQVMARP- 256
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 30686826 281 gGMFISDPKKPAGGHVLAHAATIRLLFRKGKGDTRVCKVYDAPNLAEAEASFQITQGGIADA 342
Cdd:PRK04301 257 -DAFFGDPTQPIGGHILGHTATFRIYLRKSKGNKRIARLVDSPHLPEGEAVFRITEEGIRDA 317
|
|
| Rad51_DMC1_archRadA |
cd01123 |
recombinase Rad51, DMC1, and archaeal RadA; This group of recombinases includes the eukaryotic ... |
108-339 |
5.86e-130 |
|
recombinase Rad51, DMC1, and archaeal RadA; This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal protein RadA. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Pssm-ID: 410868 [Multi-domain] Cd Length: 234 Bit Score: 370.71 E-value: 5.86e-130
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686826 108 ITTGCQALDDLLGGGIETSAITEAFGEFRSGKTQLAHTLCVTTQLPTNMKGGNGKVAYIDTEGTFRPDRIVPIAERFGMD 187
Cdd:cd01123 1 ITTGSKELDKLLGGGIETGSITEMFGEFRTGKTQLCHTLAVTCQLPIDRGGGEGKAIYIDTEGTFRPERLRAIAQRFGLD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686826 188 PGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRILIVDSIIALFRVDFTGRGELADRQQKLAQMLSRLIKIAEEFNV 267
Cdd:cd01123 81 PDDVLDNVAYARAFNSDHQTQLLDQAAAMMVESRFKLLIVDSATALYRTDYSGRGELSARQMHLAKFLRMLQRLADEFGV 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 30686826 268 AVYMTNQVIADPGGGM-FISDPKKPAGGHVLAHAATIRLLFRKGKGDTRVCKVYDAPNLAEAEASFQITQGGI 339
Cdd:cd01123 161 AVVVTNQVVAQVDGAMmFAADPKKPIGGNILAHASTTRLYLRKGRGETRICKIYDSPCLPEAEAVFAITADGV 233
|
|
| recomb_radA |
TIGR02236 |
DNA repair and recombination protein RadA; This family consists exclusively of archaeal RadA ... |
38-341 |
8.76e-119 |
|
DNA repair and recombination protein RadA; This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 131290 [Multi-domain] Cd Length: 310 Bit Score: 345.19 E-value: 8.76e-119
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686826 38 GINAGDVKKLQEAGIHTCNGLMMHTKKNLTGIKGLSEAKVDKICEAAEKIVNFG-YMTGSDALIKRKSVVKITTGCQALD 116
Cdd:TIGR02236 6 GVGPATAEKLREAGYDTFEAIAVASPKELSEIAGISEGTAAKIIQAARKAADLGgFETADDVLERRKTIGKITTGSKELD 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686826 117 DLLGGGIETSAITEAFGEFRSGKTQLAHTLCVTTQLPTNMKGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNII 196
Cdd:TIGR02236 86 ELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAEARGLDPDEVLKNIY 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686826 197 YARAYTYEHQYnLLLGLAAKMSEE---PFRILIVDSIIALFRVDFTGRGELADRQQKLAQMLSRLIKIAEEFNVAVYMTN 273
Cdd:TIGR02236 166 VARAYNSNHQM-LLVEKAEDLIKElnnPVKLLIVDSLTSHFRAEYVGRGALAERQQKLNKHLHDLLRLADLYNAAVVVTN 244
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 30686826 274 QVIADPggGMFISDPKKPAGGHVLAHAATIRLLFRKGKGDTRVCKVYDAPNLAEAEASFQITQGGIAD 341
Cdd:TIGR02236 245 QVMARP--DAFFGDPTRPIGGHILGHAATFRVYLRKGKGDKRIARLVDSPHLPEGEAVFRITEKGIED 310
|
|
| archRadA |
cd19515 |
archaeal recombinase Rad51/RadA; This group includes the archaeal protein RadA which is a ... |
108-341 |
6.00e-111 |
|
archaeal recombinase Rad51/RadA; This group includes the archaeal protein RadA which is a homolog of Rad51. RAD51 recombinase plays an essential role in DNA repair by homologous recombination (HR)
Pssm-ID: 410923 [Multi-domain] Cd Length: 233 Bit Score: 322.39 E-value: 6.00e-111
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686826 108 ITTGCQALDDLLGGGIETSAITEAFGEFRSGKTQLAHTLCVTTQLPTNMKGGNGKVAYIDTEGTFRPDRIVPIAERFGMD 187
Cdd:cd19515 1 ISTGSKELDKLLGGGIETQAITEVFGEFGSGKTQLCHQLAVNVQLPPEEGGLNGKAVYIDTENTFRPERIMQMAKALGLD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686826 188 PGAVLDNIIYARAYTYEHQYnLLLGLAAKMSEE--PFRILIVDSIIALFRVDFTGRGELADRQQKLAQMLSRLIKIAEEF 265
Cdd:cd19515 81 PDEVLDNIYVARAYNSNHQM-LLVEKAEDLIKEgnNIKLLIVDSLTSHFRAEYVGRGTLAERQQKLNKHLHDLHRLADLY 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 30686826 266 NVAVYMTNQVIADPggGMFISDPKKPAGGHVLAHAATIRLLFRKGKGDTRVCKVYDAPNLAEAEASFQITQGGIAD 341
Cdd:cd19515 160 NIAVLVTNQVMAKP--DAFFGDPTQAIGGHILGHAATFRVYLRKGKGGKRIARLVDSPHLPEGEAVFRITEKGIED 233
|
|
| radB |
PRK09361 |
DNA repair and recombination protein RadB; Provisional |
107-343 |
8.91e-48 |
|
DNA repair and recombination protein RadB; Provisional
Pssm-ID: 236482 [Multi-domain] Cd Length: 225 Bit Score: 160.80 E-value: 8.91e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686826 107 KITTGCQALDDLLGGGIETSAITEAFGEFRSGKTQLAHTLCVTTqlptnMKGGnGKVAYIDTEGtFRPDRIVPIAerfGM 186
Cdd:PRK09361 4 RLPTGCKMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEA-----AKNG-KKVIYIDTEG-LSPERFKQIA---GE 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686826 187 DPGAVLDNIIYARAYTYEHQYNlLLGLAAKMSEEPFRILIVDSIIALFRVDFTGRGELADRQQKLAQMLSRLIKIAEEFN 266
Cdd:PRK09361 74 DFEELLSNIIIFEPSSFEEQSE-AIRKAEKLAKENVGLIVLDSATSLYRLELEDEEDNSKLNRELGRQLTHLLKLARKHD 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 30686826 267 VAVYMTNQVIADPGGGMFisdpkKPAGGHVLAHAATIRLLFRKGKGDTRVCKVYDAPNLAEAE-ASFQITQGGIADAK 343
Cdd:PRK09361 153 LAVVITNQVYSDIDSDGL-----RPLGGHTLEHWSKTILRLEKFRNGKRRATLEKHRSRPEGEsAEFRITDRGIEIID 225
|
|
| RecA-like |
cd01393 |
RecA family; RecA is a bacterial enzyme which has roles in homologous recombination, DNA ... |
128-309 |
1.80e-44 |
|
RecA family; RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs RadA and RadB.
Pssm-ID: 410881 [Multi-domain] Cd Length: 185 Bit Score: 150.97 E-value: 1.80e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686826 128 ITEAFGEFRSGKTQLAHTLCVTTQLptnmkgGNGKVAYIDTEGTFRPDRIVPIAER---FGMDPGAVLDNIIYARAYTYE 204
Cdd:cd01393 3 ITEIYGPPGSGKTQLALQLAANALL------LGGGVVWIDTEGAFPPSRLVQILEAspsSELELAEALSRLLYFRPPDTL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686826 205 HQYNLLLGLAAKMSEEP-FRILIVDSIIALFRVDF----TGRGELADRQQKLAQMLSRLIKIAEEFNVAVYMTNQVIADP 279
Cdd:cd01393 77 AHLLALDSLPESLFPPPnTSLVVVDSVSALFRKAFprggDGDSSSSLRARLLSQLARALQKLAAQFNLAVVVTNQVTTKI 156
|
170 180 190
....*....|....*....|....*....|
gi 30686826 280 GGGmFISDPKKPAGGHVLAHAATIRLLFRK 309
Cdd:cd01393 157 RGG-SGASLVPPALGNTWEHSVSTRLLLYR 185
|
|
| archRadB |
cd01394 |
archaeal RadB; The archaeal protein RadB shares similarity RadA, the archaeal functional ... |
108-339 |
1.25e-43 |
|
archaeal RadB; The archaeal protein RadB shares similarity RadA, the archaeal functional homologue to the bacterial RecA. The precise function of RadB is unclear.
Pssm-ID: 410882 [Multi-domain] Cd Length: 216 Bit Score: 149.77 E-value: 1.25e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686826 108 ITTGCQALDDLLGGGIETSAITEAFGEFRSGKTQLAHTLCVTTqlptnMKGGnGKVAYIDTEGtFRPDRIVPIAerfGMD 187
Cdd:cd01394 1 LSTGSKSLDSLLGGGVERGTITQIYGPPGSGKTNICLQLAVEA-----AKQG-KKVVYIDTEG-LSPERFQQIA---GER 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686826 188 PGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRILIVDSIIALFRVDftgRGELADRQQKLAQMLSRLIKIAEEFNV 267
Cdd:cd01394 71 FESIASNIIVFEPYSFDEQGVAIQEAEKLLKSDKVDLVVVDSATALYRLE---LGDDSEANRELSRQMSKLLSIARKYDI 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 30686826 268 AVYMTNQVIADpgggmFISDPKKPAGGHVLAHAATIRLLFRKGKGDTRVCKVYDAPNLAEAE-ASFQITQGGI 339
Cdd:cd01394 148 PVVITNQVYSD-----IDDDRLKPVGGTLLEHWSKAIIRLEKSPPGLRRATLEKHRSRPEGQsAGFRITDRGI 215
|
|
| XRCC3 |
cd19491 |
XRCC3 recombinase; XRCC3 (X-ray repair complementing defective repair in Chinese hamster cells ... |
115-309 |
2.50e-43 |
|
XRCC3 recombinase; XRCC3 (X-ray repair complementing defective repair in Chinese hamster cells 3) recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. XRCC3, together with the other RAD51 paralogs, RAD51B, RAD51C, RAD51D, and XRCC2, helps recruit RAD51 to the break site.
Pssm-ID: 410899 [Multi-domain] Cd Length: 250 Bit Score: 150.13 E-value: 2.50e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686826 115 LDDLLGGGIETSAITEAFGEFRSGKTQLAHTLCVTTQLPTNMKGGNGKVAYIDTEGTFRPDRIVPIAERF-----GMDPG 189
Cdd:cd19491 1 LDELLGGGIPVGGITEIAGESGAGKTQLCLQLALTVQLPRELGGLGGGAVYICTESSFPSKRLQQLASSLpkryhLEKAK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686826 190 AVLDNIIYARAYTYEHQYNLL-LGLAAKMSEEPFRILIVDSIIALFRVDF-TGRGELADRQQKLAQMLSRLIKIAEEFNV 267
Cdd:cd19491 81 NFLDNIFVEHVADLETLEHCLnYQLPALLERGPIRLVVIDSIAALFRSEFdTSRSDLVERAKYLRRLADHLKRLADKYNL 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 30686826 268 AVYMTNQVIADPG--------------------GGMFISDPKKPAGGHVLAHAATIRLLFRK 309
Cdd:cd19491 161 AVVVVNQVTDRFDsssdasglgvldylsqfssfSGGVSGNRKVPALGLTWANLVNTRLMLSR 222
|
|
| Rad51B |
cd19493 |
RAD51B recombinase; RAD51B recombinase, a RAD51 paralog, plays an important role in DNA repair ... |
116-315 |
2.92e-35 |
|
RAD51B recombinase; RAD51B recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51B, together with the other RAD51 paralogs, RAD51C, RAD51D, XRCC3, and XRCC2, helps recruit RAD51 to the break site.
Pssm-ID: 410901 [Multi-domain] Cd Length: 222 Bit Score: 127.82 E-value: 2.92e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686826 116 DDLLGGGIETSAITEAFGEFRSGKTQLAHTLCVTTQLPTNMKGGNGKVAYIDTEGTFRPDRIVPIAER-----------F 184
Cdd:cd19493 1 DTALAGGLPLGAITEITGASGSGKTQFALTLASSAAMPARKGGLDGGVLYIDTESKFSAERLAEIAEArfpeafsgfmeE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686826 185 GMDPGAVLDNIIYARAYTYEHQYNLLLGLAAKMSEEPFRILIVDSIIALFRVDFTG-RGELADRQQKLAQMLSRLIKIAE 263
Cdd:cd19493 81 NERAEEMLKRVAVVRVTTLAQLLERLPNLEEHILSSGVRLVVIDSIAALVRREFGGsDGEVTERHNALAREASSLKRLAE 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 30686826 264 EFNVAVYMTNQVIADPGGGMFISDPKKPAGGHVLAHAATIRLLFRKGKGDTR 315
Cdd:cd19493 161 EFRIAVLVTNQATTHFGDAGDGSSGVTAALGDAWAHAVNTRLRLERCLLQLR 212
|
|
| recomb_radB |
TIGR02237 |
DNA repair and recombination protein RadB; This family consists exclusively of archaeal RadB ... |
115-339 |
6.29e-35 |
|
DNA repair and recombination protein RadB; This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Pssm-ID: 274047 [Multi-domain] Cd Length: 209 Bit Score: 126.76 E-value: 6.29e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686826 115 LDDLLGGGIETSAITEAFGEFRSGKTqlahTLCVTTQLPTNMKGgnGKVAYIDTEGtFRPDRIVPIAERfgmDPGAVLDN 194
Cdd:TIGR02237 1 IDELLGGGVERGTITQIYGPPGSGKT----NICMILAVNAARQG--KKVVYIDTEG-LSPERFKQIAED---RPERALSN 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686826 195 IIYARAYTYEHQYNLLLGLAAKMSEEPFRILIVDSIIALFRVDftGRGELADRQQKLAQMLSRLIKIAEEFNVAVYMTNQ 274
Cdd:TIGR02237 71 FIVFEVFDFDEQGVAIQKTSKFIDRDSASLVVVDSFTALYRLE--LSDDRISRNRELARQLTLLLSLARKKNLAVVITNQ 148
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 30686826 275 VIADPGGGMFisdpkKPAGGHVLAHAATIRLLFRKGKGDtRVCKVYDAPNLAEAE-ASFQITQGGI 339
Cdd:TIGR02237 149 VYTDVNNGTL-----RPLGGHLLEHWSKVILRLEKFRGR-RLATLEKHRSRPEGEsVYFRITDDGI 208
|
|
| RecA |
COG0468 |
RecA/RadA recombinase [Replication, recombination and repair]; |
78-342 |
4.37e-34 |
|
RecA/RadA recombinase [Replication, recombination and repair];
Pssm-ID: 440236 [Multi-domain] Cd Length: 351 Bit Score: 128.36 E-value: 4.37e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686826 78 DKICEAA----EKivNFG---YMTGSDAliKRKSVVKITTGCQALDDLLG-GGIETSAITEAFGEFRSGKTQLAHTLCVT 149
Cdd:COG0468 11 EKALEAAlsqiEK--QFGkgsIMRLGDK--ARQDVEVISTGSLALDIALGvGGLPRGRIVEIYGPESSGKTTLALHAIAE 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686826 150 TQlptnmKGGnGKVAYIDTEGTFRPDRivpiAERFGMDpgavLDNIIYARAYTYEHQYNLLLGLAakmSEEPFRILIVDS 229
Cdd:COG0468 87 AQ-----KAG-GIAAFIDAEHALDPEY----AKKLGVD----IDNLLVSQPDTGEQALEIAETLV---RSGAVDLIVVDS 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686826 230 IIALFR----VDFTGRGELADRQQKLAQMLSRLIKIAEEFNVAVYMTNQVIADPgGGMFiSDPKKPAGGHVLAHAATIRL 305
Cdd:COG0468 150 VAALVPkaeiEGEMGDSHVGLQARLMSQALRKLTGAISKSNTTVIFINQLREKI-GVMF-GNPETTTGGNALKFYASVRL 227
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 30686826 306 LFRKG----KGD------TRVcKVYD---APNLAEAEasFQITQG-GIADA 342
Cdd:COG0468 228 DIRRIgtikDGDevignrTRV-KVVKnkvAPPFKEAE--FDIMYGeGISKE 275
|
|
| Rad51C |
cd19492 |
RAD51C recombinase; RAD51C recombinase, a RAD51 paralog, plays an important role in DNA repair ... |
128-323 |
5.40e-32 |
|
RAD51C recombinase; RAD51C recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51C, together with the other RAD51 paralogs, RAD51B, RAD51D, XRCC3, and XRCC2, helps recruit RAD51 to the break site. Additionally, RAD51C acts as a mediator in the early steps of DNA damage signaling.
Pssm-ID: 410900 [Multi-domain] Cd Length: 172 Bit Score: 117.71 E-value: 5.40e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686826 128 ITEAFGEFRSGKTQLAHTLCVTTQLPTNMKGGNGKVAYIDTEGTFrpdrivpiaerfgmdpgavldNIIYARAYTYEHQY 207
Cdd:cd19492 3 ITEICGVPGVGKTQLCMQLAVNVQIPKCFGGLAGEAIYIDTEGSF---------------------NIHYFRVHDYVELL 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686826 208 NLLLGLAAKMSEEP-FRILIVDSIIALFRVDFTGrgeLADRQQKLAQMLSRLIKIAEEFNVAVYMTNQV---IADPGGGM 283
Cdd:cd19492 62 ALINSLPKFLEDHPkVKLIVVDSIAFPFRHDFDD---LAQRTRLLNGLAQLLHSLARQHNLAVVLTNQVttkISEDGQSQ 138
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 30686826 284 FIsdpkkPAGGHVLAHAATIRLLFRKgKGDTRVCKVYDAP 323
Cdd:cd19492 139 LV-----PALGESWSHACTTRLFLTW-DEKQRFAHLYKSP 172
|
|
| Rad51D |
cd19489 |
RAD51D recombinase; RAD51D recombinase, a RAD51 paralog, plays an important role in DNA repair ... |
120-309 |
4.38e-21 |
|
RAD51D recombinase; RAD51D recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51D, together with the other RAD51 paralogs, RAD51B, RAD51C, XRCC3, and XRCC2, helps recruit RAD51 to the break site.
Pssm-ID: 410897 [Multi-domain] Cd Length: 209 Bit Score: 89.62 E-value: 4.38e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686826 120 GGGIETSAITEAFGEFRSGKTQLAHTLCVTTqlptnMKGGNGKVAYIDTEGTFRPDRIVPIAER---FGMDPGAVLDNII 196
Cdd:cd19489 1 GGGLRTGEITELVGESSSGKTQLCLTAAANV-----ASRSGQNVLYIDTKSSFSARRLAQILKSraqDAEEIDKALQRIR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686826 197 YARAYTYEHQYNLLLGLAAKMSEE------PFRILIVDSIIALF------RVDFTGRGELADrqqklaqmLSRLIK-IAE 263
Cdd:cd19489 76 VVRVFDPYELLDLLEELRNTLSQQqenlysRLKLVIIDSLSALIspllggSKHSEGHALLAS--------LARLLKkLAA 147
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 30686826 264 EFNVAVYMTNQVIADPGGGMFISDpkKPAGGHVLAHAATIRLLFRK 309
Cdd:cd19489 148 EYQIAVLVTNLTVRGGDGGQQGST--KPALGEYWESVPSTRLLLSR 191
|
|
| RAD55 |
COG0467 |
RecA-superfamily ATPase, KaiC/GvpD/RAD55 family [Signal transduction mechanisms]; |
107-274 |
4.83e-12 |
|
RecA-superfamily ATPase, KaiC/GvpD/RAD55 family [Signal transduction mechanisms];
Pssm-ID: 440235 [Multi-domain] Cd Length: 221 Bit Score: 64.55 E-value: 4.83e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686826 107 KITTGCQALDDLLGGGIETSAITEAFGEFRSGKTQLAHTLcvttqlptnMKGG--NG-KVAYIDTEGtfRPDRIVPIAER 183
Cdd:COG0467 1 RVPTGIPGLDELLGGGLPRGSSTLLSGPPGTGKTTLALQF---------LAEGlrRGeKGLYVSFEE--SPEQLLRRAES 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686826 184 FGMDPGAVLDN--IIYARAYTYEHQYN---LLLGLAAKMSEEPFRILIVDSIIALFRvdftgrgeLADRQQKLAQMLSRL 258
Cdd:COG0467 70 LGLDLEEYIESglLRIIDLSPEELGLDleeLLARLREAVEEFGAKRVVIDSLSGLLL--------ALPDPERLREFLHRL 141
|
170
....*....|....*.
gi 30686826 259 IKIAEEFNVAVYMTNQ 274
Cdd:COG0467 142 LRYLKKRGVTTLLTSE 157
|
|
| RecA |
cd00983 |
recombinase A; RecA is a bacterial enzyme which has roles in homologous recombination, DNA ... |
108-310 |
2.98e-11 |
|
recombinase A; RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Pssm-ID: 410863 [Multi-domain] Cd Length: 235 Bit Score: 62.57 E-value: 2.98e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686826 108 ITTGCQALDDLLG-GGIETSAITEAFGEFRSGKTQLAHTLCVTTQlptnmKGGnGKVAYIDTEGTFRPDrivpIAERFGM 186
Cdd:cd00983 5 IPTGSLSLDIALGiGGLPRGRIIEIYGPESSGKTTLALHAIAEAQ-----KLG-GTAAFIDAEHALDPE----YAKKLGV 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686826 187 DpgavLDNIIYARAYTYEHQYNLLLGLAAKMSeepFRILIVDSIIALfrvdfTGR----GELADRQQKL-----AQMLSR 257
Cdd:cd00983 75 D----IDNLLVSQPDTGEQALEIADTLIRSGA---VDLIVVDSVAAL-----VPKaeieGEMGDSHVGLqarlmSQALRK 142
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 30686826 258 LIKIAEEFNVAVYMTNQVIADPGGgMFISdPKKPAGGHVLAHAATIRLLFRKG 310
Cdd:cd00983 143 LTGSLSKSKTTVIFINQLREKIGV-MFGN-PETTTGGNALKFYASVRLDIRRI 193
|
|
| KaiC-like |
cd01124 |
Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most studied in cyanobacteria. ... |
108-339 |
2.24e-10 |
|
Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most studied in cyanobacteria. KaiC, an autokinase, autophosphatase, and ATPase, is part of the core oscillator, composed of three proteins: KaiA, KaiB, and KaiC. The circadian oscillation is regulated via KaiC phosphorylation.
Pssm-ID: 410869 [Multi-domain] Cd Length: 222 Bit Score: 59.58 E-value: 2.24e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686826 108 ITTGCQALDDLLGGGIETSAITEAFGEFRSGKTqlahTLCvtTQ-LPTNMKGGNgKVAYIDTEGTfrPDRIVPIAERFGM 186
Cdd:cd01124 1 VKTGIPGLDELLGGGIPKGSVTLLTGGPGTGKT----LFG--LQfLYAGAKNGE-PGLFFTFEES--PERLLRNAKSFGW 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686826 187 D--PGAVLDNIIYARAYTYEHQYNLLLGLAAKM-----SEEPFRILIvDSIIALFRvdftgrgeLADRQQKLAQMLSRLI 259
Cdd:cd01124 72 DfdEMEDEGKLIIVDAPPTEAGRFSLDELLSRIlsiikSFKAKRVVI-DSLSGLRR--------AKEDQMRARRIVIALL 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686826 260 KIAEEFNVAVYMTNQviadpgggMFISDPKKPAGGHVLAHAA--TIRLLFRKGKGDTR----VCKVYDAPNlAEAEASFQ 333
Cdd:cd01124 143 NELRAAGVTTIFTSE--------MRSFLSSESAGGGDVSFIVdgVILLRYVEIEGELRrtirVLKMRGTGH-DTGTHPFE 213
|
....*.
gi 30686826 334 ITQGGI 339
Cdd:cd01124 214 ITDKGI 219
|
|
| RecA |
pfam00154 |
recA bacterial DNA recombination protein; RecA is a DNA-dependent ATPase and functions in DNA ... |
101-339 |
2.47e-08 |
|
recA bacterial DNA recombination protein; RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyzes an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination.
Pssm-ID: 425488 [Multi-domain] Cd Length: 262 Bit Score: 54.33 E-value: 2.47e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686826 101 KRKSVVKITTGCQALDDLLG-GGIETSAITEAFGEFRSGKTQLA-HTLCVTTQLptnmkggNGKVAYIDTEGTFRPDriv 178
Cdd:pfam00154 26 KKLDVETISTGSLALDIALGiGGYPKGRIIEIYGPESSGKTTLAlHAIAEAQKA-------GGTAAFIDAEHALDPV--- 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686826 179 pIAERFGMDpgavLDNIIYARAYTYEHQYNLLLGLAAKMSEEpfrILIVDSIIALfrvdfTGR----GELADRQQKL--- 251
Cdd:pfam00154 96 -YAKKLGVD----IDNLLVSQPDTGEQALEIADMLVRSGAID---LIVVDSVAAL-----VPKaeieGEMGDSHVGLqar 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686826 252 --AQMLSRLIKIAEEFNVAVYMTNQvIADPGGGMFISdPKKPAGGHVLAHAATIRLLFR-----KGKGDT-------RVC 317
Cdd:pfam00154 163 lmSQALRKLTGSISKSNTTVIFINQ-IREKIGVMFGN-PETTTGGRALKFYASVRLDIRrigqiKQGEEVignktkvKVV 240
|
250 260
....*....|....*....|...
gi 30686826 318 KVYDAPNLAEAEasFQITQG-GI 339
Cdd:pfam00154 241 KNKVAPPFKEAE--FDIMYGeGI 261
|
|
| XRCC2 |
cd19490 |
XRCC2 recombinase; XRCC2 (X-ray repair complementing defective repair in Chinese hamster cells ... |
137-309 |
1.63e-07 |
|
XRCC2 recombinase; XRCC2 (X-ray repair complementing defective repair in Chinese hamster cells 2) recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. XRCC2, together with the other RAD51 paralogs, RAD51B, RAD51C, RAD51D, and XRCC3, helps recruit RAD51 to the break site.
Pssm-ID: 410898 [Multi-domain] Cd Length: 226 Bit Score: 51.19 E-value: 1.63e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686826 137 SGKTQLAHTLCVTTQLPTN-----MKGGNGKVAYIDTEGTFRPDRIVPIAE----------RFGMDPGAV-------LDN 194
Cdd:cd19490 12 SGKTELLYHLAARCILPSSwggvpLGGLEAAVVFIDTDGRFDILRLRSILEariraaiqaaNSSDDEEDVeeiarecLQR 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30686826 195 IIYARAYTYEHqynLLLGLAA-------KMSEEPFRILIVDSIIALFRVDFTGRGELADRQQ-------KLAQMLSRLIK 260
Cdd:cd19490 92 LHIFRCHSSLQ---LLATLLSlenyllsLSANPELGLLLIDSISAFYWQDRFSAELARAAPLlqeaalrAILRELRRLRR 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 30686826 261 iaeEFNVAVYMTNQVI--------ADPGGGMFISDPKKPAGGHVLAHA----ATIRLLFRK 309
Cdd:cd19490 169 ---RFQLVVIATKQALfpgksastDNPAANNAVSKASAPSHREYLPRPwqrlVTHRLVLSR 226
|
|
| |
