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Conserved domains on  [gi|15228768|ref|NP_188888|]
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Seed maturation protein [Arabidopsis thaliana]

Protein Classification

SMP domain-containing protein( domain architecture ID 10522750)

SMP domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
SMP pfam04927
Seed maturation protein; Plant seed maturation protein.
136-192 1.72e-15

Seed maturation protein; Plant seed maturation protein.


:

Pssm-ID: 461485  Cd Length: 59  Bit Score: 68.70  E-value: 1.72e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 15228768   136 ITIGEALEATVQTAGNKPVDQSDAAAIQAAEVRACGTNVIAPGGIAASAQSAANHNA 192
Cdd:pfam04927   1 ITIGDVLEAVAKLAGDKPVTREDAAAVQAAEARATGDLVTPPGGVAAAAQAAARLNE 57
SMP pfam04927
Seed maturation protein; Plant seed maturation protein.
201-260 4.43e-14

Seed maturation protein; Plant seed maturation protein.


:

Pssm-ID: 461485  Cd Length: 59  Bit Score: 65.23  E-value: 4.43e-14
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228768   201 IKLIDVLAgATGKLAADKAVTRQDAEGVVSAELRNNPNLSTHPGGVAASITAAARLNERA 260
Cdd:pfam04927   1 ITIGDVLE-AVAKLAGDKPVTREDAAAVQAAEARATGDLVTPPGGVAAAAQAAARLNERA 59
SMP pfam04927
Seed maturation protein; Plant seed maturation protein.
14-68 1.08e-12

Seed maturation protein; Plant seed maturation protein.


:

Pssm-ID: 461485  Cd Length: 59  Bit Score: 61.38  E-value: 1.08e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 15228768    14 VTYGDVFE-VSGELADKPIAPEDANMMQAAETRVFG--HTQKGGAAAVMQSAATANKR 68
Cdd:pfam04927   1 ITIGDVLEaVAKLAGDKPVTREDAAAVQAAEARATGdlVTPPGGVAAAAQAAARLNER 58
 
Name Accession Description Interval E-value
SMP pfam04927
Seed maturation protein; Plant seed maturation protein.
136-192 1.72e-15

Seed maturation protein; Plant seed maturation protein.


Pssm-ID: 461485  Cd Length: 59  Bit Score: 68.70  E-value: 1.72e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 15228768   136 ITIGEALEATVQTAGNKPVDQSDAAAIQAAEVRACGTNVIAPGGIAASAQSAANHNA 192
Cdd:pfam04927   1 ITIGDVLEAVAKLAGDKPVTREDAAAVQAAEARATGDLVTPPGGVAAAAQAAARLNE 57
SMP pfam04927
Seed maturation protein; Plant seed maturation protein.
201-260 4.43e-14

Seed maturation protein; Plant seed maturation protein.


Pssm-ID: 461485  Cd Length: 59  Bit Score: 65.23  E-value: 4.43e-14
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228768   201 IKLIDVLAgATGKLAADKAVTRQDAEGVVSAELRNNPNLSTHPGGVAASITAAARLNERA 260
Cdd:pfam04927   1 ITIGDVLE-AVAKLAGDKPVTREDAAAVQAAEARATGDLVTPPGGVAAAAQAAARLNERA 59
SMP pfam04927
Seed maturation protein; Plant seed maturation protein.
14-68 1.08e-12

Seed maturation protein; Plant seed maturation protein.


Pssm-ID: 461485  Cd Length: 59  Bit Score: 61.38  E-value: 1.08e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 15228768    14 VTYGDVFE-VSGELADKPIAPEDANMMQAAETRVFG--HTQKGGAAAVMQSAATANKR 68
Cdd:pfam04927   1 ITIGDVLEaVAKLAGDKPVTREDAAAVQAAEARATGdlVTPPGGVAAAAQAAARLNER 58
 
Name Accession Description Interval E-value
SMP pfam04927
Seed maturation protein; Plant seed maturation protein.
136-192 1.72e-15

Seed maturation protein; Plant seed maturation protein.


Pssm-ID: 461485  Cd Length: 59  Bit Score: 68.70  E-value: 1.72e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 15228768   136 ITIGEALEATVQTAGNKPVDQSDAAAIQAAEVRACGTNVIAPGGIAASAQSAANHNA 192
Cdd:pfam04927   1 ITIGDVLEAVAKLAGDKPVTREDAAAVQAAEARATGDLVTPPGGVAAAAQAAARLNE 57
SMP pfam04927
Seed maturation protein; Plant seed maturation protein.
201-260 4.43e-14

Seed maturation protein; Plant seed maturation protein.


Pssm-ID: 461485  Cd Length: 59  Bit Score: 65.23  E-value: 4.43e-14
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 15228768   201 IKLIDVLAgATGKLAADKAVTRQDAEGVVSAELRNNPNLSTHPGGVAASITAAARLNERA 260
Cdd:pfam04927   1 ITIGDVLE-AVAKLAGDKPVTREDAAAVQAAEARATGDLVTPPGGVAAAAQAAARLNERA 59
SMP pfam04927
Seed maturation protein; Plant seed maturation protein.
14-68 1.08e-12

Seed maturation protein; Plant seed maturation protein.


Pssm-ID: 461485  Cd Length: 59  Bit Score: 61.38  E-value: 1.08e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 15228768    14 VTYGDVFE-VSGELADKPIAPEDANMMQAAETRVFG--HTQKGGAAAVMQSAATANKR 68
Cdd:pfam04927   1 ITIGDVLEaVAKLAGDKPVTREDAAAVQAAEARATGdlVTPPGGVAAAAQAAARLNER 58
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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