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Conserved domains on  [gi|15230219|ref|NP_188517|]
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Mitochondrial transcription termination factor family protein [Arabidopsis thaliana]

Protein Classification

mTERF domain-containing protein( domain architecture ID 139977)

mTERF (mitochondrial transcription termination factor) domain-containing protein may function as a transcription termination factor that binds promoter DNA and regulates mitochondrial replication and transcription

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
mTERF super family cl47744
mTERF; This family contains one sequence of known function Human mitochondrial transcription ...
 69-268 3.18e-35

mTERF; This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerization role as in other leucine zippers.


The actual alignment was detected with superfamily member pfam02536:

Pssm-ID: 460581 [Multi-domain]  Cd Length: 313  Bit Score: 128.49  E-value: 3.18e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15230219    69 VNLLKSKGISDEDFPRLVFLCPQLFSptFDISKL------DPVFDFLTgELGASAEESRGLIVNCPNILFSDVEYCLRPT 142
Cdd:pfam02536 109 VEYLRELGVPQKLLARLLISRPQLLA--LDLVYLmkpktfEEKVEFLK-ELGFSVEDVWKIIKKCPEILGLSIEKKLKKK 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15230219   143 LVYLKELGVRN--LNRASKTNAHVLNTRVEKLRAKMRFLKSIGFEHEEAARVCGRIPAIFGYSVEdNLRPKFEFLVYDME 220
Cdd:pfam02536 186 IEFLKKCGLSEeeLPRVIKKYPQILSLSERTILNRVEFLLGLGFSKEEVAKMVKRFPQLLGLSIE-VLKPKLEFLVKEMK 264

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 15230219   221 RELEELKKFPQYFAFSLGKRIRPRHWHLKKKNVRVSLSRMLMWGDQKF 268
Cdd:pfam02536 265 WPLKEVVEYPRVFGYSLEKRIKPRIKALVSKGLECSLSWMLACSDERF 312
 
Name Accession Description Interval E-value
mTERF pfam02536
mTERF; This family contains one sequence of known function Human mitochondrial transcription ...
 69-268 3.18e-35

mTERF; This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerization role as in other leucine zippers.


Pssm-ID: 460581 [Multi-domain]  Cd Length: 313  Bit Score: 128.49  E-value: 3.18e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15230219    69 VNLLKSKGISDEDFPRLVFLCPQLFSptFDISKL------DPVFDFLTgELGASAEESRGLIVNCPNILFSDVEYCLRPT 142
Cdd:pfam02536 109 VEYLRELGVPQKLLARLLISRPQLLA--LDLVYLmkpktfEEKVEFLK-ELGFSVEDVWKIIKKCPEILGLSIEKKLKKK 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15230219   143 LVYLKELGVRN--LNRASKTNAHVLNTRVEKLRAKMRFLKSIGFEHEEAARVCGRIPAIFGYSVEdNLRPKFEFLVYDME 220
Cdd:pfam02536 186 IEFLKKCGLSEeeLPRVIKKYPQILSLSERTILNRVEFLLGLGFSKEEVAKMVKRFPQLLGLSIE-VLKPKLEFLVKEMK 264

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 15230219   221 RELEELKKFPQYFAFSLGKRIRPRHWHLKKKNVRVSLSRMLMWGDQKF 268
Cdd:pfam02536 265 WPLKEVVEYPRVFGYSLEKRIKPRIKALVSKGLECSLSWMLACSDERF 312
PLN03196 PLN03196
MOC1-like protein; Provisional
 69-268 1.23e-19

MOC1-like protein; Provisional


Pssm-ID: 215628 [Multi-domain]  Cd Length: 487  Bit Score: 87.84  E-value: 1.23e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15230219   69 VNLLKSKGISDEDFPRLVFLCPQLFSPTFDiSKLDPVFDFLTGELGASAEESRGLIVNCPNILfsdveyclrptlvylke 148
Cdd:PLN03196 272 VECLLEFGVRKEALPSVIAQYPDILGLDLK-AKLAEQQYWLTSKLKIDPEDFGRVIEKLPQIV----------------- 333

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15230219  149 lgvrNLNRaSKTNAHVlntrveklrakmRFLKSIGFEHEEAARVCGRIPAIFGYSVEdNLRPKFEFLVYDMERELEELKK 228
Cdd:PLN03196 334 ----SLNR-NVALKHV------------EFLRGRGFSAQDVAKMVVRCPQILALNLE-IMKPSLEFFKKEMKRPLKELVE 395

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 15230219  229 FPQYFAFSLGKRIRPRHWHLKKKNVRVSLSRMLMWGDQKF 268
Cdd:PLN03196 396 FPAYFTYGLESRIKPRYERVAKKGIKCSLAWFLNCSDDKF 435
 
Name Accession Description Interval E-value
mTERF pfam02536
mTERF; This family contains one sequence of known function Human mitochondrial transcription ...
 69-268 3.18e-35

mTERF; This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerization role as in other leucine zippers.


Pssm-ID: 460581 [Multi-domain]  Cd Length: 313  Bit Score: 128.49  E-value: 3.18e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15230219    69 VNLLKSKGISDEDFPRLVFLCPQLFSptFDISKL------DPVFDFLTgELGASAEESRGLIVNCPNILFSDVEYCLRPT 142
Cdd:pfam02536 109 VEYLRELGVPQKLLARLLISRPQLLA--LDLVYLmkpktfEEKVEFLK-ELGFSVEDVWKIIKKCPEILGLSIEKKLKKK 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15230219   143 LVYLKELGVRN--LNRASKTNAHVLNTRVEKLRAKMRFLKSIGFEHEEAARVCGRIPAIFGYSVEdNLRPKFEFLVYDME 220
Cdd:pfam02536 186 IEFLKKCGLSEeeLPRVIKKYPQILSLSERTILNRVEFLLGLGFSKEEVAKMVKRFPQLLGLSIE-VLKPKLEFLVKEMK 264

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 15230219   221 RELEELKKFPQYFAFSLGKRIRPRHWHLKKKNVRVSLSRMLMWGDQKF 268
Cdd:pfam02536 265 WPLKEVVEYPRVFGYSLEKRIKPRIKALVSKGLECSLSWMLACSDERF 312
PLN03196 PLN03196
MOC1-like protein; Provisional
 69-268 1.23e-19

MOC1-like protein; Provisional


Pssm-ID: 215628 [Multi-domain]  Cd Length: 487  Bit Score: 87.84  E-value: 1.23e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15230219   69 VNLLKSKGISDEDFPRLVFLCPQLFSPTFDiSKLDPVFDFLTGELGASAEESRGLIVNCPNILfsdveyclrptlvylke 148
Cdd:PLN03196 272 VECLLEFGVRKEALPSVIAQYPDILGLDLK-AKLAEQQYWLTSKLKIDPEDFGRVIEKLPQIV----------------- 333

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15230219  149 lgvrNLNRaSKTNAHVlntrveklrakmRFLKSIGFEHEEAARVCGRIPAIFGYSVEdNLRPKFEFLVYDMERELEELKK 228
Cdd:PLN03196 334 ----SLNR-NVALKHV------------EFLRGRGFSAQDVAKMVVRCPQILALNLE-IMKPSLEFFKKEMKRPLKELVE 395

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 15230219  229 FPQYFAFSLGKRIRPRHWHLKKKNVRVSLSRMLMWGDQKF 268
Cdd:PLN03196 396 FPAYFTYGLESRIKPRYERVAKKGIKCSLAWFLNCSDDKF 435
PLN03196 PLN03196
MOC1-like protein; Provisional
 43-243 2.03e-06

MOC1-like protein; Provisional


Pssm-ID: 215628 [Multi-domain]  Cd Length: 487  Bit Score: 48.55  E-value: 2.03e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15230219   43 LSSLGIVPQN-PRLAPPANdLSVILSAVNLLKSKGISDEDFPR--LVFLCpqlfsptfDISK-LDPVFDFLtGELGASAE 118
Cdd:PLN03196  70 LRGIGIDPDElDGLELPST-VDVMRERVEFLHKLGLTIEDINEypLVLGC--------SVKKnMIPVLDYL-EKLGVTRS 139

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15230219  119 ESRGLIVNCPNILFSDVEYCLRPTLVYLKELGVR--NLNRASKTNAHVLNTRVE-KLRAKMRFLKSIGFEHEEAARVCGR 195
Cdd:PLN03196 140 SLPELLRRYPQVLHASVVVDLAPVVKYLQGLDVKrqDIPRVLERYPELLGFKLEgTMSTSVAYLVSIGVAPRDIGPMLTR 219

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 15230219  196 IPAIFGYSVEDNLRPKFEFLV------YDMERELEelkKFPQYFAFSLGKRIRP 243
Cdd:PLN03196 220 FPEILGMRVGNNIKPKVDYLEslglprLAVARILE---KRPYILGFDLEETVKP 270
mTERF pfam02536
mTERF; This family contains one sequence of known function Human mitochondrial transcription ...
 143-244 1.78e-04

mTERF; This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerization role as in other leucine zippers.


Pssm-ID: 460581 [Multi-domain]  Cd Length: 313  Bit Score: 42.20  E-value: 1.78e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15230219   143 LVYLKELGVRN--LNRASKTNAHVLNTRVEK-LRAKMRFLKSIGFEHEEAARVCGRIPAIFGYSVEDNLRPKFEFLV--- 216
Cdd:pfam02536   1 LSLLESLGVTDsqISKILTRYPPVLHADVEKdLAPKLQFLLSLGASSSDLGKILSKYPRILGFKLEETMSTSVDFLKeig 80

                          90       100
                  ....*....|....*....|....*...
gi 15230219   217 YDMERELEELKKFPQYFAFSLGKRIRPR 244
Cdd:pfam02536  81 VDKSSIGGALRSWPSILGMRVGNNIKNN 108
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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