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Conserved domains on  [gi|15230600|ref|NP_187888|]
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myb domain protein 10 [Arabidopsis thaliana]

Protein Classification

SANT/Myb-like DNA-binding domain-containing protein( domain architecture ID 999994)

SANT (SWI3, ADA2, N-CoR and TFIIIB)/Myb-like DNA-binding domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03091 super family cl33633
hypothetical protein; Provisional
 1-121 2.34e-55

hypothetical protein; Provisional


The actual alignment was detected with superfamily member PLN03091:

Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 183.64  E-value: 2.34e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15230600    1 MGnrRAPCCDKSQVKRGPWSDEESERLRSFILKNGHQNWRSLPKLAGLMRCGKSCRLRWINYLRPGLKRGNFTKEEEDTI 80
Cdd:PLN03091   1 MG--RHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLI 78

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 15230600   81 IHLHQAYGNKWSKIASNFPGRTDNEIKNVWNTHLKKRLVKR 121
Cdd:PLN03091  79 IELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQR 119
 
Name Accession Description Interval E-value
PLN03091 PLN03091
hypothetical protein; Provisional
 1-121 2.34e-55

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 183.64  E-value: 2.34e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15230600    1 MGnrRAPCCDKSQVKRGPWSDEESERLRSFILKNGHQNWRSLPKLAGLMRCGKSCRLRWINYLRPGLKRGNFTKEEEDTI 80
Cdd:PLN03091   1 MG--RHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLI 78

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 15230600   81 IHLHQAYGNKWSKIASNFPGRTDNEIKNVWNTHLKKRLVKR 121
Cdd:PLN03091  79 IELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQR 119
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 14-118 4.67e-17

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 79.45  E-value: 4.67e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15230600  14 VKRGPWSDEESERLRSFILKNGHQNWRSLPKLAGLmRCGKSCRLRWINYLRPGLKRGNFTKEEEDTIIHLHQAYGNKWSK 93
Cdd:COG5147  18 RKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLIS-STGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQWST 96

                        90       100
                ....*....|....*....|....*
gi 15230600  94 IASNFPGRTDNEIKNVWNTHLKKRL 118
Cdd:COG5147  97 IADYKDRRTAQQCVERYVNTLEDLS 121
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 69-114 1.70e-15

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 67.91  E-value: 1.70e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 15230600    69 RGNFTKEEEDTIIHLHQAYGNKWSKIASNFPGRTDNEIKNVWNTHL 114
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQNYL 46
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
69-116 5.76e-11

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 56.08  E-value: 5.76e-11
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 15230600     69 RGNFTKEEEDTIIHLHQAYG-NKWSKIASNFPGRTDNEIKNVWNTHLKK 116
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGkNNWEKIAKELPGRTAEQCRERWRNLLKP 49
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 71-114 4.68e-10

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 53.35  E-value: 4.68e-10
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*
gi 15230600  71 NFTKEEEDTIIHLHQAYG-NKWSKIASNFPGRTDNEIKNVWNTHL 114
Cdd:cd00167   1 PWTEEEDELLLEAVKKYGkNNWEKIAKELPGRTPKQCRERWRNLL 45
 
Name Accession Description Interval E-value
PLN03091 PLN03091
hypothetical protein; Provisional
 1-121 2.34e-55

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 183.64  E-value: 2.34e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15230600    1 MGnrRAPCCDKSQVKRGPWSDEESERLRSFILKNGHQNWRSLPKLAGLMRCGKSCRLRWINYLRPGLKRGNFTKEEEDTI 80
Cdd:PLN03091   1 MG--RHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLI 78

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 15230600   81 IHLHQAYGNKWSKIASNFPGRTDNEIKNVWNTHLKKRLVKR 121
Cdd:PLN03091  79 IELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQR 119
PLN03212 PLN03212
Transcription repressor MYB5; Provisional
 1-121 2.12e-53

Transcription repressor MYB5; Provisional


Pssm-ID: 178751 [Multi-domain]  Cd Length: 249  Bit Score: 172.57  E-value: 2.12e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15230600    1 MGNRRAPCCDKSQVKRGPWSDEESERLRSFILKNGHQNWRSLPKLAGLMRCGKSCRLRWINYLRPGLKRGNFTKEEEDTI 80
Cdd:PLN03212  10 VSKKTTPCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLI 89

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 15230600   81 IHLHQAYGNKWSKIASNFPGRTDNEIKNVWNTHLKKRLVKR 121
Cdd:PLN03212  90 LRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQ 130
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 14-118 4.67e-17

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 79.45  E-value: 4.67e-17
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15230600  14 VKRGPWSDEESERLRSFILKNGHQNWRSLPKLAGLmRCGKSCRLRWINYLRPGLKRGNFTKEEEDTIIHLHQAYGNKWSK 93
Cdd:COG5147  18 RKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLIS-STGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQWST 96

                        90       100
                ....*....|....*....|....*
gi 15230600  94 IASNFPGRTDNEIKNVWNTHLKKRL 118
Cdd:COG5147  97 IADYKDRRTAQQCVERYVNTLEDLS 121
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 69-114 1.70e-15

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 67.91  E-value: 1.70e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 15230600    69 RGNFTKEEEDTIIHLHQAYGNKWSKIASNFPGRTDNEIKNVWNTHL 114
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQNYL 46
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
69-116 5.76e-11

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 56.08  E-value: 5.76e-11
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 15230600     69 RGNFTKEEEDTIIHLHQAYG-NKWSKIASNFPGRTDNEIKNVWNTHLKK 116
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGkNNWEKIAKELPGRTAEQCRERWRNLLKP 49
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 71-114 4.68e-10

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 53.35  E-value: 4.68e-10
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*
gi 15230600  71 NFTKEEEDTIIHLHQAYG-NKWSKIASNFPGRTDNEIKNVWNTHL 114
Cdd:cd00167   1 PWTEEEDELLLEAVKKYGkNNWEKIAKELPGRTPKQCRERWRNLL 45
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 16-63 4.53e-09

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 50.97  E-value: 4.53e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 15230600    16 RGPWSDEESERLRSFILKNGHqNWRSLPKLAGLmRCGKSCRLRWINYL 63
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGN-RWKKIAKLLPG-RTDNQCKNRWQNYL 46
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 19-77 4.29e-08

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 48.46  E-value: 4.29e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 15230600    19 WSDEESERLRSFILKNGhQNWRSLPKLAGlMRCGKSCRLRWINYLRPGLKRGNFTKEEE 77
Cdd:pfam13921   1 WTEEEDEKLLKLVEKYG-NDWKQIAKELG-RRTPKQCFDRWRRKLNPKISRGPWSKEED 57
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 72-115 2.19e-07

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 46.53  E-value: 2.19e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 15230600    72 FTKEEEDTIIHLHQAYGNKWSKIASNFPGRTDNEIKNVWNTHLK 115
Cdd:pfam13921   1 WTEEEDEKLLKLVEKYGNDWKQIAKELGRRTPKQCFDRWRRKLN 44
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
16-65 2.33e-06

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 43.37  E-value: 2.33e-06
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 15230600     16 RGPWSDEESERLRSFILKNGHQNWRSLPKLAGLmRCGKSCRLRWINYLRP 65
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPG-RTAEQCRERWRNLLKP 49
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 18-63 4.31e-06

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 42.56  E-value: 4.31e-06
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*.
gi 15230600  18 PWSDEESERLRSFILKNGHQNWRSLPKLAGLmRCGKSCRLRWINYL 63
Cdd:cd00167   1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPG-RTPKQCRERWRNLL 45
SANT_CDC5_II cd11659
SANT/myb-like DNA-binding domain of Cell Division Cycle 5-Like Protein repeat II; In humans, ...
 65-104 7.47e-04

SANT/myb-like DNA-binding domain of Cell Division Cycle 5-Like Protein repeat II; In humans, cell division cycle 5-like protein (CDC5) functions in pre-mRNA splicing in cell cycle control. The DNA-binding, myb-like domain of CDC5 is a member of the SANT/myb group. SANT is named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. The SANT domain resembles the 3 alpha-helix bundle of DNA-binding Myb domains and is found in a diverse set of proteins.


Pssm-ID: 212557 [Multi-domain]  Cd Length: 53  Bit Score: 36.52  E-value: 7.47e-04
                        10        20        30        40
                ....*....|....*....|....*....|....*....|
gi 15230600  65 PGLKRGNFTKEEEDTIIHLHQAYGNKWSKIAsNFPGRTDN 104
Cdd:cd11659   1 PSIKKTEWTREEDEKLLHLAKLLPTQWRTIA-PIVGRTAQ 39
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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