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Conserved domains on  [gi|22330985|ref|NP_187741|]
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plant intracellular ras group-related LRR 9 [Arabidopsis thaliana]

Protein Classification

leucine-rich repeat domain-containing protein( domain architecture ID 11471121)

leucine-rich repeat (LRR) domain-containing protein may participate in protein-protein interactions

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
214-400 1.14e-40

Leucine-rich repeat (LRR) protein [Transcription];


:

Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 151.24  E-value: 1.14e-40
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22330985 214 PEAFGRIQGLLVLNLSNNKLESIPDSIAGLHSLVELDVSTNSLETLPDSIGLLSKLKILNVSTNKLTSLPDSICRCGSLV 293
Cdd:COG4886 106 NEELSNLTNLESLDLSGNQLTDLPEELANLTNLKELDLSNNQLTDLPEPLGNLTNLKSLDLSNNQLTDLPEELGNLTNLK 185

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22330985 294 ILDVSFNRLTYLPTNIGpELVNLEKLLVQYNKIRSFPTSIGEMRSLKHLDAHFNELNGLPdSFVLLTNLEYLNLSSNfsD 373
Cdd:COG4886 186 ELDLSNNQITDLPEPLG-NLTNLEELDLSGNQLTDLPEPLANLTNLETLDLSNNQLTDLP-ELGNLTNLEELDLSNN--Q 261

                       170       180
                ....*....|....*....|....*..
gi 22330985 374 LKDLPFSfGELISLQELDLSNNQIHAL 400
Cdd:COG4886 262 LTDLPPL-ANLTNLKTLDLSNNQLTDL 287
LRR_4 pfam12799
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ...
 386-421 9.05e-03

Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.


:

Pssm-ID: 463713 [Multi-domain]  Cd Length: 44  Bit Score: 34.14  E-value: 9.05e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 22330985   386 SLQELDLSNNQIHALPDtFGTLDSLTKLNVDQNPLV 421
Cdd:pfam12799   2 NLEVLDLSNNQITDIPP-LAKLPNLETLDLSGNNKI 36
 
Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
214-400 1.14e-40

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 151.24  E-value: 1.14e-40
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22330985 214 PEAFGRIQGLLVLNLSNNKLESIPDSIAGLHSLVELDVSTNSLETLPDSIGLLSKLKILNVSTNKLTSLPDSICRCGSLV 293
Cdd:COG4886 106 NEELSNLTNLESLDLSGNQLTDLPEELANLTNLKELDLSNNQLTDLPEPLGNLTNLKSLDLSNNQLTDLPEELGNLTNLK 185

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22330985 294 ILDVSFNRLTYLPTNIGpELVNLEKLLVQYNKIRSFPTSIGEMRSLKHLDAHFNELNGLPdSFVLLTNLEYLNLSSNfsD 373
Cdd:COG4886 186 ELDLSNNQITDLPEPLG-NLTNLEELDLSGNQLTDLPEPLANLTNLETLDLSNNQLTDLP-ELGNLTNLEELDLSNN--Q 261

                       170       180
                ....*....|....*....|....*..
gi 22330985 374 LKDLPFSfGELISLQELDLSNNQIHAL 400
Cdd:COG4886 262 LTDLPPL-ANLTNLKTLDLSNNQLTDL 287
PRK15370 PRK15370
type III secretion system effector E3 ubiquitin transferase SlrP;
186-427 6.48e-21

type III secretion system effector E3 ubiquitin transferase SlrP;


Pssm-ID: 185268 [Multi-domain]  Cd Length: 754  Bit Score: 96.30  E-value: 6.48e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22330985  186 EEVVGILQHASANPVDRVDLSGRKLRLLPEAFGriQGLLVLNLSNNKLESIPDSIAGlhSLVELDVSTNSL----ETLPD 261
Cdd:PRK15370 166 EEAVQRMRDCLKNNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQG--NIKTLYANSNQLtsipATLPD 241

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22330985  262 SIgllsklKILNVSTNKLTSLPDSICrcGSLVILDVSFNRLTYLPTNIgPElvNLEKLLVQYNKIRSFPTSIGEmrSLKH 341
Cdd:PRK15370 242 TI------QEMELSINRITELPERLP--SALQSLDLFHNKISCLPENL-PE--ELRYLSVYDNSIRTLPAHLPS--GITH 308

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22330985  342 LDAHFNELNGLPDSfvLLTNLEYLNLSSNfsDLKDLPFSFGEliSLQELDLSNNQIHALPDTFGTldSLTKLNVDQNPLV 421
Cdd:PRK15370 309 LNVQSNSLTALPET--LPPGLKTLEAGEN--ALTSLPASLPP--ELQVLDVSKNQITVLPETLPP--TITTLDVSRNALT 380


                 ....*.
gi 22330985  422 VPPEEV 427
Cdd:PRK15370 381 NLPENL 386
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 205-395 4.65e-10

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 59.41  E-value: 4.65e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22330985 205 LSGRKLRLLpEAFGRIQGLLVLNLSNNKLESIPDsIAGLHSLVELDVSTNSLETLpDSIGLLSKLKILNVSTNKLTSLpD 284
Cdd:cd21340   9 LNDKNITKI-DNLSLCKNLKVLYLYDNKITKIEN-LEFLTNLTHLYLQNNQIEKI-ENLENLVNLKKLYLGGNRISVV-E 84

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22330985 285 SICRCGSLVILDVSFNRltyLPTNigpelvnlEKLLVQYNKIrsfpTSIGEmrSLKHLDAHFNELNGLpDSFVLLTNLEY 364
Cdd:cd21340  85 GLENLTNLEELHIENQR---LPPG--------EKLTFDPRSL----AALSN--SLRVLNISGNNIDSL-EPLAPLRNLEQ 146

                       170       180       190
                ....*....|....*....|....*....|..
gi 22330985 365 LNLSSN-FSDLKDLPFSFGELISLQELDLSNN 395
Cdd:cd21340 147 LDASNNqISDLEELLDLLSSWPSLRELDLTGN 178
LRR_8 pfam13855
Leucine rich repeat;
360-420 2.71e-07

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 47.52  E-value: 2.71e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 22330985   360 TNLEYLNLSSNFsdLKDL-PFSFGELISLQELDLSNNQIHAL-PDTFGTLDSLTKLNVDQNPL 420
Cdd:pfam13855   1 PNLRSLDLSNNR--LTSLdDGAFKGLSNLKVLDLSNNLLTTLsPGAFSGLPSLRYLDLSGNRL 61
LRR_4 pfam12799
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ...
 386-421 9.05e-03

Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.


Pssm-ID: 463713 [Multi-domain]  Cd Length: 44  Bit Score: 34.14  E-value: 9.05e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 22330985   386 SLQELDLSNNQIHALPDtFGTLDSLTKLNVDQNPLV 421
Cdd:pfam12799   2 NLEVLDLSNNQITDIPP-LAKLPNLETLDLSGNNKI 36
 
Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
214-400 1.14e-40

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 151.24  E-value: 1.14e-40
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22330985 214 PEAFGRIQGLLVLNLSNNKLESIPDSIAGLHSLVELDVSTNSLETLPDSIGLLSKLKILNVSTNKLTSLPDSICRCGSLV 293
Cdd:COG4886 106 NEELSNLTNLESLDLSGNQLTDLPEELANLTNLKELDLSNNQLTDLPEPLGNLTNLKSLDLSNNQLTDLPEELGNLTNLK 185

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22330985 294 ILDVSFNRLTYLPTNIGpELVNLEKLLVQYNKIRSFPTSIGEMRSLKHLDAHFNELNGLPdSFVLLTNLEYLNLSSNfsD 373
Cdd:COG4886 186 ELDLSNNQITDLPEPLG-NLTNLEELDLSGNQLTDLPEPLANLTNLETLDLSNNQLTDLP-ELGNLTNLEELDLSNN--Q 261

                       170       180
                ....*....|....*....|....*..
gi 22330985 374 LKDLPFSfGELISLQELDLSNNQIHAL 400
Cdd:COG4886 262 LTDLPPL-ANLTNLKTLDLSNNQLTDL 287
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
202-419 1.49e-36

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 139.68  E-value: 1.49e-36
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22330985 202 RVDLSGRKLRLLPEAFGRIQGLLVLNLSNNKLESIPDSIAGLHSLVELDVSTNSLETLPDSIGLLSKLKILNVSTNKLTS 281
Cdd:COG4886 117 SLDLSGNQLTDLPEELANLTNLKELDLSNNQLTDLPEPLGNLTNLKSLDLSNNQLTDLPEELGNLTNLKELDLSNNQITD 196

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22330985 282 LPDSICRCGSLVILDVSFNRLTYLPTNIGpELVNLEKLLVQYNKIRSFPtSIGEMRSLKHLDAHFNELNGLPDSFvLLTN 361
Cdd:COG4886 197 LPEPLGNLTNLEELDLSGNQLTDLPEPLA-NLTNLETLDLSNNQLTDLP-ELGNLTNLEELDLSNNQLTDLPPLA-NLTN 273

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 22330985 362 LEYLNLSSN---FSDLKDLPFSFGELISLQELDLSNNQIHALPDTFGTLDSLTKLNVDQNP 419
Cdd:COG4886 274 LKTLDLSNNqltDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLL 334
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
223-426 1.13e-35

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 137.37  E-value: 1.13e-35
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22330985 223 LLVLNLSNNKLESIPDSIAGLHSLVELDVSTNsletlpDSIGLLSKLKILNVSTNKLTSLPDSICRCGSLVILDVSFNRL 302
Cdd:COG4886  75 LLLSLLLLSLLLLGLTDLGDLTNLTELDLSGN------EELSNLTNLESLDLSGNQLTDLPEELANLTNLKELDLSNNQL 148

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22330985 303 TYLPTNIGpELVNLEKLLVQYNKIRSFPTSIGEMRSLKHLDAHFNELNGLPDSFVLLTNLEYLNLSSNfsDLKDLPFSFG 382
Cdd:COG4886 149 TDLPEPLG-NLTNLKSLDLSNNQLTDLPEELGNLTNLKELDLSNNQITDLPEPLGNLTNLEELDLSGN--QLTDLPEPLA 225

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....
gi 22330985 383 ELISLQELDLSNNQIHALPDtFGTLDSLTKLNVDQNPLVVPPEE 426
Cdd:COG4886 226 NLTNLETLDLSNNQLTDLPE-LGNLTNLEELDLSNNQLTDLPPL 268
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
205-425 1.31e-30

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 123.12  E-value: 1.31e-30
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22330985 205 LSGRKLRLLPEAFGRIQGLLVLNLSNNKLESIPDSIAGLHSLVELDVSTNSLET----LPDSIGLLSKLKILNVSTNklt 280
Cdd:COG4886  30 LLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSllllGLTDLGDLTNLTELDLSGN--- 106

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22330985 281 slpDSICRCGSLVILDVSFNRLTYLPTNIGpELVNLEKLLVQYNKIRSFPTSIGEMRSLKHLDAHFNELNGLPDSFVLLT 360
Cdd:COG4886 107 ---EELSNLTNLESLDLSGNQLTDLPEELA-NLTNLKELDLSNNQLTDLPEPLGNLTNLKSLDLSNNQLTDLPEELGNLT 182

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 22330985 361 NLEYLNLSSNfsDLKDLPFSFGELISLQELDLSNNQIHALPDTFGTLDSLTKLNVDQNPLVVPPE 425
Cdd:COG4886 183 NLKELDLSNN--QITDLPEPLGNLTNLEELDLSGNQLTDLPEPLANLTNLETLDLSNNQLTDLPE 245
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
210-429 7.79e-25

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 106.56  E-value: 7.79e-25
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22330985 210 LRLLPEAFGRIQGLLVLNLSNNKLESIPDSIAGLHSLVELDVSTNSLETLPDSIGLLSKLKILNVSTNKLTSLPDSICRC 289
Cdd:COG4886  16 LLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDL 95

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22330985 290 GSLVILDVSFNRLTYlptnigpELVNLEKLLVQYNKIRSFPTSIGEMRSLKHLDAHFNELNGLPDSFVLLTNLEYLNLSS 369
Cdd:COG4886  96 TNLTELDLSGNEELS-------NLTNLESLDLSGNQLTDLPEELANLTNLKELDLSNNQLTDLPEPLGNLTNLKSLDLSN 168

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 22330985 370 NfsDLKDLPFSFGELISLQELDLSNNQIHALPDTFGTLDSLTKLNVDQNPLVVPPEEVVK 429
Cdd:COG4886 169 N--QLTDLPEELGNLTNLKELDLSNNQITDLPEPLGNLTNLEELDLSGNQLTDLPEPLAN 226
PRK15370 PRK15370
type III secretion system effector E3 ubiquitin transferase SlrP;
186-427 6.48e-21

type III secretion system effector E3 ubiquitin transferase SlrP;


Pssm-ID: 185268 [Multi-domain]  Cd Length: 754  Bit Score: 96.30  E-value: 6.48e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22330985  186 EEVVGILQHASANPVDRVDLSGRKLRLLPEAFGriQGLLVLNLSNNKLESIPDSIAGlhSLVELDVSTNSL----ETLPD 261
Cdd:PRK15370 166 EEAVQRMRDCLKNNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQG--NIKTLYANSNQLtsipATLPD 241

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22330985  262 SIgllsklKILNVSTNKLTSLPDSICrcGSLVILDVSFNRLTYLPTNIgPElvNLEKLLVQYNKIRSFPTSIGEmrSLKH 341
Cdd:PRK15370 242 TI------QEMELSINRITELPERLP--SALQSLDLFHNKISCLPENL-PE--ELRYLSVYDNSIRTLPAHLPS--GITH 308

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22330985  342 LDAHFNELNGLPDSfvLLTNLEYLNLSSNfsDLKDLPFSFGEliSLQELDLSNNQIHALPDTFGTldSLTKLNVDQNPLV 421
Cdd:PRK15370 309 LNVQSNSLTALPET--LPPGLKTLEAGEN--ALTSLPASLPP--ELQVLDVSKNQITVLPETLPP--TITTLDVSRNALT 380


                 ....*.
gi 22330985  422 VPPEEV 427
Cdd:PRK15370 381 NLPENL 386
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
204-422 2.08e-18

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 87.30  E-value: 2.08e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22330985 204 DLSGRKLRLLPEAFGRIQGLLVLNLSNNKLESIPDSIAGLHSLVELDVSTNSLETLPdSIGLLSKLKILNVSTNKLTSLP 283
Cdd:COG4886 188 DLSNNQITDLPEPLGNLTNLEELDLSGNQLTDLPEPLANLTNLETLDLSNNQLTDLP-ELGNLTNLEELDLSNNQLTDLP 266

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22330985 284 DSiCRCGSLVILDVSFNRLTYLPTNIGPELVNLEKLLVQYNKIRSFPTSIGEMRSLKHLDAHFNELNGLPDSFVLLTNLE 363
Cdd:COG4886 267 PL-ANLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLS 345

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|....*....
gi 22330985 364 YLNLSSNFSDLKDLPFSFGELISLQELDLSNNQIHALPDTFGTLDSLTKLNVDQNPLVV 422
Cdd:COG4886 346 LLALLTLLLLLNLLSLLLTLLLTLGLLGLLEATLLTLALLLLTLLLLLLTTTAGVLLLT 404
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 200-420 4.59e-18

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 87.60  E-value: 4.59e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22330985  200 VDRVDLSGRKLRL-LPEA-FGRIQGLLVLNLSNNKLE-SIPD-SIAGLHSLvelDVSTNSLE-TLPDSIGLLSKLKILNV 274
Cdd:PLN00113  95 IQTINLSNNQLSGpIPDDiFTTSSSLRYLNLSNNNFTgSIPRgSIPNLETL---DLSNNMLSgEIPNDIGSFSSLKVLDL 171

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22330985  275 STNKLTS-LPDSICRCGSLVILDVSFNRLT-YLPTNIGpELVNLEKLLVQYNKIR-SFPTSIGEMRSLKHLDAHFNELNG 351
Cdd:PLN00113 172 GGNVLVGkIPNSLTNLTSLEFLTLASNQLVgQIPRELG-QMKSLKWIYLGYNNLSgEIPYEIGGLTSLNHLDLVYNNLTG 250

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 22330985  352 -LPDSFVLLTNLEYLNLSSN-FSDlkDLPFSFGELISLQELDLSNNQIHA-LPDTFGTLDSLTKLNVDQNPL 420
Cdd:PLN00113 251 pIPSSLGNLKNLQYLFLYQNkLSG--PIPPSIFSLQKLISLDLSDNSLSGeIPELVIQLQNLEILHLFSNNF 320
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
223-420 8.68e-18

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 85.37  E-value: 8.68e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22330985 223 LLVLNLSNNKLESIPDSIAGLHSLVELDVSTNSLETLPDSIGLLSKLKILNVSTNKLTSLPDSICRCGSLVILDVSFNRL 302
Cdd:COG4886   2 LLLLLSLTLKLLLLLLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLL 81

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22330985 303 TYLPTNIGPELVNLEKLlvqYNKIRSFPTSIGEMRSLKHLDAHFNELNGLPDSFVLLTNLEYLNLSSNfsDLKDLPFSFG 382
Cdd:COG4886  82 LSLLLLGLTDLGDLTNL---TELDLSGNEELSNLTNLESLDLSGNQLTDLPEELANLTNLKELDLSNN--QLTDLPEPLG 156

                       170       180       190
                ....*....|....*....|....*....|....*...
gi 22330985 383 ELISLQELDLSNNQIHALPDTFGTLDSLTKLNVDQNPL 420
Cdd:COG4886 157 NLTNLKSLDLSNNQLTDLPEELGNLTNLKELDLSNNQI 194
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 191-425 3.01e-16

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 81.82  E-value: 3.01e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22330985  191 ILQHASANPVDRV--DLSGRklrlLPEAFGRIQGLLVLNLSNNKLE-SIPDSIAGLHSLVELDVSTNSLE---------- 257
Cdd:PLN00113 232 IGGLTSLNHLDLVynNLTGP----IPSSLGNLKNLQYLFLYQNKLSgPIPPSIFSLQKLISLDLSDNSLSgeipelviql 307

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22330985  258 ---------------TLPDSIGLLSKLKILNVSTNKLT-SLPDSICRCGSLVILDVSFNRLT-YLPTNIGPElVNLEKLL 320
Cdd:PLN00113 308 qnleilhlfsnnftgKIPVALTSLPRLQVLQLWSNKFSgEIPKNLGKHNNLTVLDLSTNNLTgEIPEGLCSS-GNLFKLI 386

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22330985  321 VQYNKIRS-FPTSIGEMRSLKHLDAHFNELNG-LPDSFVLLTNLEYLNLSSN-----FSDLK------------------ 375
Cdd:PLN00113 387 LFSNSLEGeIPKSLGACRSLRRVRLQDNSFSGeLPSEFTKLPLVYFLDISNNnlqgrINSRKwdmpslqmlslarnkffg 466

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 22330985  376 DLPFSFGElISLQELDLSNNQIH-ALPDTFGTLDSLTKLNVDQNPL--VVPPE 425
Cdd:PLN00113 467 GLPDSFGS-KRLENLDLSRNQFSgAVPRKLGSLSELMQLKLSENKLsgEIPDE 518
PRK15370 PRK15370
type III secretion system effector E3 ubiquitin transferase SlrP;
115-356 1.06e-15

type III secretion system effector E3 ubiquitin transferase SlrP;


Pssm-ID: 185268 [Multi-domain]  Cd Length: 754  Bit Score: 80.13  E-value: 1.06e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22330985  115 ALTDAAAKDEKRRQEM-----DQEKTWCESILKLDEVHASYekllkeAEERLVRIYESAE-KNAAED-EENVAAVEVNEE 187
Cdd:PRK15370 157 APAKEAANREEAVQRMrdclkNNKTELRLKILGLTTIPACI------PEQITTLILDNNElKSLPENlQGNIKTLYANSN 230

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22330985  188 VVGILQHASANPVDRVDLSGRKLRLLPEAFGriQGLLVLNLSNNKLESIPDSIA-GLHSL------------------VE 248
Cdd:PRK15370 231 QLTSIPATLPDTIQEMELSINRITELPERLP--SALQSLDLFHNKISCLPENLPeELRYLsvydnsirtlpahlpsgiTH 308

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22330985  249 LDVSTNSLETLPDSigLLSKLKILNVSTNKLTSLPDSICRcgSLVILDVSFNRLTYLPTNIGPelvNLEKLLVQYNKIRS 328
Cdd:PRK15370 309 LNVQSNSLTALPET--LPPGLKTLEAGENALTSLPASLPP--ELQVLDVSKNQITVLPETLPP---TITTLDVSRNALTN 381

                        250       260
                 ....*....|....*....|....*...
gi 22330985  329 FPTSIGEmrSLKHLDAHFNELNGLPDSF 356
Cdd:PRK15370 382 LPENLPA--ALQIMQASRNNLVRLPESL 407
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 200-424 1.25e-13

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 73.73  E-value: 1.25e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22330985  200 VDRVDLSGRKLR-LLPEAFGRIQGLLVLNLSNNKLE-SIPDSIAGL-HSLVELDVSTNSLeTLPDSIGLLSKLKILNVST 276
Cdd:PLN00113  71 VVSIDLSGKNISgKISSAIFRLPYIQTINLSNNQLSgPIPDDIFTTsSSLRYLNLSNNNF-TGSIPRGSIPNLETLDLSN 149

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22330985  277 NKLT-SLPDSICRCGSLVILDVSFNRLT-YLPTNIGpELVNLEKLLVQYNK-IRSFPTSIGEMRSLKHLDAHFNELNGlp 353
Cdd:PLN00113 150 NMLSgEIPNDIGSFSSLKVLDLGGNVLVgKIPNSLT-NLTSLEFLTLASNQlVGQIPRELGQMKSLKWIYLGYNNLSG-- 226

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 22330985  354 dsfvlltnleylnlssnfsdlkDLPFSFGELISLQELDLS-NNQIHALPDTFGTLDSLTKLNVDQNPLV--VPP 424
Cdd:PLN00113 227 ----------------------EIPYEIGGLTSLNHLDLVyNNLTGPIPSSLGNLKNLQYLFLYQNKLSgpIPP 278
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 213-420 1.45e-13

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 73.34  E-value: 1.45e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22330985  213 LPEAFGRIQGLLVLNLSNNKLES-IPDSIAGLHSLVELDVSTNSLET-LPDSIGLLSKLK-------------------- 270
Cdd:PLN00113 348 IPKNLGKHNNLTVLDLSTNNLTGeIPEGLCSSGNLFKLILFSNSLEGeIPKSLGACRSLRrvrlqdnsfsgelpseftkl 427

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22330985  271 ----ILNVSTNKLT-SLPDSICRCGSLVILDVSFNRLT-YLPTNIGPElvNLEKLLVQYNKIR-SFPTSIGEMRSLKHLD 343
Cdd:PLN00113 428 plvyFLDISNNNLQgRINSRKWDMPSLQMLSLARNKFFgGLPDSFGSK--RLENLDLSRNQFSgAVPRKLGSLSELMQLK 505

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22330985  344 AHFNELNG-LPDSFVLLTNLEYLNLSSN-FSDlkDLPFSFGELISLQELDLSNNQIHA-LPDTFGTLDSLTKLNVDQNPL 420
Cdd:PLN00113 506 LSENKLSGeIPDELSSCKKLVSLDLSHNqLSG--QIPASFSEMPVLSQLDLSQNQLSGeIPKNLGNVESLVQVNISHNHL 583
PLN03150 PLN03150
hypothetical protein; Provisional
 200-300 4.03e-11

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 65.22  E-value: 4.03e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22330985  200 VDRVDLSGRKLR-LLPEAFGRIQGLLVLNLSNNKLE-SIPDSIAGLHSLVELDVSTNSLE-TLPDSIGLLSKLKILNVST 276
Cdd:PLN03150 420 IDGLGLDNQGLRgFIPNDISKLRHLQSINLSGNSIRgNIPPSLGSITSLEVLDLSYNSFNgSIPESLGQLTSLRILNLNG 499

                         90       100
                 ....*....|....*....|....*
gi 22330985  277 NKLTS-LPDSIcrcGSLVILDVSFN 300
Cdd:PLN03150 500 NSLSGrVPAAL---GGRLLHRASFN 521
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 205-395 4.65e-10

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 59.41  E-value: 4.65e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22330985 205 LSGRKLRLLpEAFGRIQGLLVLNLSNNKLESIPDsIAGLHSLVELDVSTNSLETLpDSIGLLSKLKILNVSTNKLTSLpD 284
Cdd:cd21340   9 LNDKNITKI-DNLSLCKNLKVLYLYDNKITKIEN-LEFLTNLTHLYLQNNQIEKI-ENLENLVNLKKLYLGGNRISVV-E 84

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22330985 285 SICRCGSLVILDVSFNRltyLPTNigpelvnlEKLLVQYNKIrsfpTSIGEmrSLKHLDAHFNELNGLpDSFVLLTNLEY 364
Cdd:cd21340  85 GLENLTNLEELHIENQR---LPPG--------EKLTFDPRSL----AALSN--SLRVLNISGNNIDSL-EPLAPLRNLEQ 146

                       170       180       190
                ....*....|....*....|....*....|..
gi 22330985 365 LNLSSN-FSDLKDLPFSFGELISLQELDLSNN 395
Cdd:cd21340 147 LDASNNqISDLEELLDLLSSWPSLRELDLTGN 178
PRK15387 PRK15387
type III secretion system effector E3 ubiquitin transferase SspH2;
222-420 6.03e-10

type III secretion system effector E3 ubiquitin transferase SspH2;


Pssm-ID: 185285 [Multi-domain]  Cd Length: 788  Bit Score: 61.72  E-value: 6.03e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22330985  222 GLLVLNLSNNKLESIPDSIAGLHslvELDVSTNSLETLPdsiGLLSKLKILNVSTNKLTSLPdsiCRCGSLVILDVSFNR 301
Cdd:PRK15387 283 GLCKLWIFGNQLTSLPVLPPGLQ---ELSVSDNQLASLP---ALPSELCKLWAYNNQLTSLP---TLPSGLQELSVSDNQ 353

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22330985  302 LTYLPTnIGPELVnleKLLVQYNKIRSFPTSIGemrSLKHLDAHFNELNGLPdsfVLLTNLEYLNLSSNfsDLKDLPFSF 381
Cdd:PRK15387 354 LASLPT-LPSELY---KLWAYNNRLTSLPALPS---GLKELIVSGNRLTSLP---VLPSELKELMVSGN--RLTSLPMLP 421

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 22330985  382 GELISLQeldLSNNQIHALPDTFGTLDSLTKLNVDQNPL 420
Cdd:PRK15387 422 SGLLSLS---VYRNQLTRLPESLIHLSSETTVNLEGNPL 457
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 223-403 2.17e-09

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 60.25  E-value: 2.17e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22330985  223 LLVLNLSNNK-LESIPDSiAGLHSLVELDVSTNSL-ETLPDSIGLLSKLKILNVSTNKLTS-LPDSICRCGSLVILDVSF 299
Cdd:PLN00113 454 LQMLSLARNKfFGGLPDS-FGSKRLENLDLSRNQFsGAVPRKLGSLSELMQLKLSENKLSGeIPDELSSCKKLVSLDLSH 532

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22330985  300 NRLTylptnigpelvnlekllvqynkiRSFPTSIGEMRSLKHLDAHFNELNGlpdsfvlltnleylnlssnfsdlkDLPF 379
Cdd:PLN00113 533 NQLS-----------------------GQIPASFSEMPVLSQLDLSQNQLSG------------------------EIPK 565

                        170       180
                 ....*....|....*....|....*
gi 22330985  380 SFGELISLQELDLSNNQIH-ALPDT 403
Cdd:PLN00113 566 NLGNVESLVQVNISHNHLHgSLPST 590
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 226-420 5.63e-09

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 56.33  E-value: 5.63e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22330985 226 LNLSNNKLESIPDsIAGLHSLVELDVSTNSLETLPDsIGLLSKLKILNVSTNKLTSLpDSICRCGSLVILDVSFNRLTYL 305
Cdd:cd21340   7 LYLNDKNITKIDN-LSLCKNLKVLYLYDNKITKIEN-LEFLTNLTHLYLQNNQIEKI-ENLENLVNLKKLYLGGNRISVV 83

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22330985 306 ptnIGPE-LVNLEKLLVQYNKIRSFPTSIGEMRSLKHLdahfnelnglpdsfvlLTNLEYLNLSSN-FSDLKDLpfsfGE 383
Cdd:cd21340  84 ---EGLEnLTNLEELHIENQRLPPGEKLTFDPRSLAAL----------------SNSLRVLNISGNnIDSLEPL----AP 140

                       170       180       190       200
                ....*....|....*....|....*....|....*....|
gi 22330985 384 LISLQELDLSNNQIH---ALPDTFGTLDSLTKLNVDQNPL 420
Cdd:cd21340 141 LRNLEQLDASNNQISdleELLDLLSSWPSLRELDLTGNPV 180
LRR_8 pfam13855
Leucine rich repeat;
360-420 2.71e-07

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 47.52  E-value: 2.71e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 22330985   360 TNLEYLNLSSNFsdLKDL-PFSFGELISLQELDLSNNQIHAL-PDTFGTLDSLTKLNVDQNPL 420
Cdd:pfam13855   1 PNLRSLDLSNNR--LTSLdDGAFKGLSNLKVLDLSNNLLTTLsPGAFSGLPSLRYLDLSGNRL 61
PLN03150 PLN03150
hypothetical protein; Provisional
 352-420 5.03e-07

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 52.13  E-value: 5.03e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22330985  352 LPDSFVLLTNLEYLNLSSNFSDlKDLPFSFGELISLQELDLSNNQIH-ALPDTFGTLDSLTKLNVDQNPL 420
Cdd:PLN03150 434 IPNDISKLRHLQSINLSGNSIR-GNIPPSLGSITSLEVLDLSYNSFNgSIPESLGQLTSLRILNLNGNSL 502
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 223-296 7.04e-07

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 50.17  E-value: 7.04e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22330985 223 LLVLNLSNNKLESIpDSIAGLHSLVELDVSTN---SLETLPDSIGLLSKLKILNVSTNKLTSLP---DS-ICRCGSLVIL 295
Cdd:cd21340 122 LRVLNISGNNIDSL-EPLAPLRNLEQLDASNNqisDLEELLDLLSSWPSLRELDLTGNPVCKKPkyrDKiILASKSLEVL 200


                .
gi 22330985 296 D 296
Cdd:cd21340 201 D 201
PLN03150 PLN03150
hypothetical protein; Provisional
 304-371 2.44e-06

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 50.20  E-value: 2.44e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22330985  304 YLPTNIgPELVNLEKLLVQYNKIR-SFPTSIGEMRSLKHLDAHFNELNGL-PDSFVLLTNLEYLNLSSNF 371
Cdd:PLN03150 433 FIPNDI-SKLRHLQSINLSGNSIRgNIPPSLGSITSLEVLDLSYNSFNGSiPESLGQLTSLRILNLNGNS 501
LRR_8 pfam13855
Leucine rich repeat;
315-370 3.75e-06

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 44.05  E-value: 3.75e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 22330985   315 NLEKLLVQYNKIRSF-PTSIGEMRSLKHLDAHFNELNGL-PDSFVLLTNLEYLNLSSN 370
Cdd:pfam13855   2 NLRSLDLSNNRLTSLdDGAFKGLSNLKVLDLSNNLLTTLsPGAFSGLPSLRYLDLSGN 59
LRR_8 pfam13855
Leucine rich repeat;
214-256 5.23e-06

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 43.67  E-value: 5.23e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 22330985   214 PEAFGRIQGLLVLNLSNNKLESI-PDSIAGLHSLVELDVSTNSL 256
Cdd:pfam13855  18 DGAFKGLSNLKVLDLSNNLLTTLsPGAFSGLPSLRYLDLSGNRL 61
LRR_8 pfam13855
Leucine rich repeat;
221-279 8.55e-06

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 43.28  E-value: 8.55e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 22330985   221 QGLLVLNLSNNKLESI-PDSIAGLHSLVELDVSTNSLETL-PDSIGLLSKLKILNVSTNKL 279
Cdd:pfam13855   1 PNLRSLDLSNNRLTSLdDGAFKGLSNLKVLDLSNNLLTTLsPGAFSGLPSLRYLDLSGNRL 61
LRR_8 pfam13855
Leucine rich repeat;
245-302 3.48e-05

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 41.36  E-value: 3.48e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 22330985   245 SLVELDVSTNSLETLPDSIGL-LSKLKILNVSTNKLTSL-PDSICRCGSLVILDVSFNRL 302
Cdd:pfam13855   2 NLRSLDLSNNRLTSLDDGAFKgLSNLKVLDLSNNLLTTLsPGAFSGLPSLRYLDLSGNRL 61
PLN03150 PLN03150
hypothetical protein; Provisional
 259-351 1.84e-04

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 44.04  E-value: 1.84e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22330985  259 LPDSIGLLSKLKILNVSTNKLT-SLPDSICRCGSLVILDVSFNRLTylptnigpelvnlekllvqynkiRSFPTSIGEMR 337
Cdd:PLN03150 434 IPNDISKLRHLQSINLSGNSIRgNIPPSLGSITSLEVLDLSYNSFN-----------------------GSIPESLGQLT 490

                         90
                 ....*....|....
gi 22330985  338 SLKHLDAHFNELNG 351
Cdd:PLN03150 491 SLRILNLNGNSLSG 504
LRR_RI cd00116
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ...
 205-397 2.66e-04

Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).


Pssm-ID: 238064 [Multi-domain]  Cd Length: 319  Bit Score: 43.11  E-value: 2.66e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22330985 205 LSGRKLRLLPEAFGRIQGLLVLNLSNNKLESIPDSIAGLHS-------LVELDVSTNSLetLPDSIGLL------SKLKI 271
Cdd:cd00116  35 LGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQgltkgcgLQELDLSDNAL--GPDGCGVLesllrsSSLQE 112

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22330985 272 LNVSTNKL---------TSLPDSICRCGSLVIldvSFNRLTYLPT----NIGPELVNLEKLLVQYNKIRSFPT-----SI 333
Cdd:cd00116 113 LKLNNNGLgdrglrllaKGLKDLPPALEKLVL---GRNRLEGASCealaKALRANRDLKELNLANNGIGDAGIralaeGL 189

                       170       180       190       200       210       220       230
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 22330985 334 GEMRSLKHLDAHFNELNGLPDSF---VLLTN--LEYLNLSSNFSDLKDL----PFSFGELISLQELDLSNNQI 397
Cdd:cd00116 190 KANCNLEVLDLNNNGLTDEGASAlaeTLASLksLEVLNLGDNNLTDAGAaalaSALLSPNISLLTLSLSCNDI 262
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
204-379 7.00e-04

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 41.84  E-value: 7.00e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22330985 204 DLSGRKLRLLPEAFGRIQGLLVLNLSNNKLESIPD---------------------SIAGLHSLVELDVSTNSLETLPDS 262
Cdd:COG4886 211 DLSGNQLTDLPEPLANLTNLETLDLSNNQLTDLPElgnltnleeldlsnnqltdlpPLANLTNLKTLDLSNNQLTDLKLK 290

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22330985 263 IGLLSKLKILNVSTNKLTSLPDSICRCGSLVILDVSFNRLTYLPTNIGPELVNLEKLLVQYNKIRSFPTSIGEMRSLKHL 342
Cdd:COG4886 291 ELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLLTLLLTLG 370

                       170       180       190
                ....*....|....*....|....*....|....*..
gi 22330985 343 DAHFNELNGLPDSFVLLTNLEYLNLSSNFSDLKDLPF 379
Cdd:COG4886 371 LLGLLEATLLTLALLLLTLLLLLLTTTAGVLLLTLAL 407
LRR_RI cd00116
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ...
 204-304 2.58e-03

Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).


Pssm-ID: 238064 [Multi-domain]  Cd Length: 319  Bit Score: 40.03  E-value: 2.58e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22330985 204 DLSGRKLRLLPEAFGRIQGLLVLNLSNNKLESIPDS-----IAGLHSLVELDVSTNSL------ETLPDSIGLLSKLKIL 272
Cdd:cd00116 176 GIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASalaetLASLKSLEVLNLGDNNLtdagaaALASALLSPNISLLTL 255

                        90       100       110       120
                ....*....|....*....|....*....|....*....|.
gi 22330985 273 NVSTNKLT---------SLPDSICrcgsLVILDVSFNRLTY 304
Cdd:cd00116 256 SLSCNDITddgakdlaeVLAEKES----LLELDLRGNKFGE 292
PLN03210 PLN03210
Resistant to P. syringae 6; Provisional
 202-402 3.10e-03

Resistant to P. syringae 6; Provisional


Pssm-ID: 215633 [Multi-domain]  Cd Length: 1153  Bit Score: 40.24  E-value: 3.10e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22330985   202 RVDLSGRKLRLLPEAFGRIQGLLVLNLSNNK-LESIPD-SIAGlhSLVELDVST-NSLETLPDSIGLLSKLKILNVS-TN 277
Cdd:PLN03210  615 KLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKnLKEIPDlSMAT--NLETLKLSDcSSLVELPSSIQYLNKLEDLDMSrCE 692

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22330985   278 KLTSLPDSIcRCGSLVILDVS-FNRLTYLPtNIGpelVNLEKLLVQYNKIRSFPT----------SIGEMRSLKHLD--- 343
Cdd:PLN03210  693 NLEILPTGI-NLKSLYRLNLSgCSRLKSFP-DIS---TNISWLDLDETAIEEFPSnlrlenldelILCEMKSEKLWErvq 767

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 22330985   344 ------------------AHFNELNGLPDSFVLLTNLEYLNLsSNFSDLKDLPFSFgELISLQELDLSN-NQIHALPD 402
Cdd:PLN03210  768 pltplmtmlspsltrlflSDIPSLVELPSSIQNLHKLEHLEI-ENCINLETLPTGI-NLESLESLDLSGcSRLRTFPD 843
LRR_4 pfam12799
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ...
 360-402 8.61e-03

Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.


Pssm-ID: 463713 [Multi-domain]  Cd Length: 44  Bit Score: 34.14  E-value: 8.61e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 22330985   360 TNLEYLNLSSNfsDLKDLPFsFGELISLQELDLS-NNQIHALPD 402
Cdd:pfam12799   1 PNLEVLDLSNN--QITDIPP-LAKLPNLETLDLSgNNKITDLSD 41
LRR_4 pfam12799
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ...
 386-421 9.05e-03

Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.


Pssm-ID: 463713 [Multi-domain]  Cd Length: 44  Bit Score: 34.14  E-value: 9.05e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 22330985   386 SLQELDLSNNQIHALPDtFGTLDSLTKLNVDQNPLV 421
Cdd:pfam12799   2 NLEVLDLSNNQITDIPP-LAKLPNLETLDLSGNNKI 36
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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