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Conserved domains on  [gi|15231990|ref|NP_187506|]
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light harvesting complex photosystem II [Arabidopsis thaliana]

Protein Classification

chlorophyll a-b binding domain-containing protein; chlorophyll a-b binding protein( domain architecture ID 10010699)

chlorophyll a-b binding domain-containing protein such as plant chlorophyll a-b binding proteins, which are components of the light-harvesting complex (LHC) that functions as a light receptor, capturing and delivering excitation energy to photosystems with which it is closely associated| chlorophyll a-b binding protein is a component of the light-harvesting complex (LHC) that functions as a light receptor; it captures and delivers excitation energy to photosystems with which it is closely associated

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
PLN00187 PLN00187
photosystem II light-harvesting complex II protein Lhcb4; Provisional
 13-286 0e+00

photosystem II light-harvesting complex II protein Lhcb4; Provisional


:

Pssm-ID: 177781  Cd Length: 286  Bit Score: 581.75  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231990   13 IMGTRVvSDISSNSSRFTARFGFGTKKASPKKAK----TVISDRPLWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQ 88
Cdd:PLN00187  10 FMGTRV-PDVASNSGRIVARFGFGKKKKAAKKAKkkssKVGADRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQ 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231990   89 FDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKV 168
Cdd:PLN00187  89 FDLDSLDQNLAKNLAGDVIGTRTEASEIKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALSVEALTGVTWQDAGKV 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231990  169 ELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMV 248
Cdd:PLN00187 169 ELVDGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMV 248

                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 15231990  249 GFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS 286
Cdd:PLN00187 249 AFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS 286
 
Name Accession Description Interval E-value
PLN00187 PLN00187
photosystem II light-harvesting complex II protein Lhcb4; Provisional
 13-286 0e+00

photosystem II light-harvesting complex II protein Lhcb4; Provisional


Pssm-ID: 177781  Cd Length: 286  Bit Score: 581.75  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231990   13 IMGTRVvSDISSNSSRFTARFGFGTKKASPKKAK----TVISDRPLWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQ 88
Cdd:PLN00187  10 FMGTRV-PDVASNSGRIVARFGFGKKKKAAKKAKkkssKVGADRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQ 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231990   89 FDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKV 168
Cdd:PLN00187  89 FDLDSLDQNLAKNLAGDVIGTRTEASEIKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALSVEALTGVTWQDAGKV 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231990  169 ELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMV 248
Cdd:PLN00187 169 ELVDGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMV 248

                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 15231990  249 GFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS 286
Cdd:PLN00187 249 AFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS 286
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
61-258 2.12e-52

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 168.64  E-value: 2.12e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231990    61 SPEYLDGSLVGDYGFDPFGLGKPAEylqfdldsldqnlaknlygevigtrteavdpkstpfqpysevfGLQRFRECELIH 140
Cdd:pfam00504   1 PPAYLDGSLPGDYGFDPLGLSADPE-------------------------------------------TFKRYREAELKH 37

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231990   141 GRWAMLATLGAITVEWLTGVT------WQDAGKVELVdgssylgqplPFSISTLIW-IEVLVIGYIEFQRNAE------L 207
Cdd:pfam00504  38 GRWAMLAVLGALVPEALGKLGggnepvWFEAGAVALH----------AQSVPTLLAlQILLLMGFLELARWQGgkapglG 107

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 15231990   208 DSEKRLYPGGKFFDPLGLAS-DPVKKAQLQLAEIKHARLAMVGFLGFAVQAA 258
Cdd:pfam00504 108 GGGDRGYPGGFGFDPLGLAKkDPETLAELKLKELKNGRLAMIAFLGFFVQEL 159
 
Name Accession Description Interval E-value
PLN00187 PLN00187
photosystem II light-harvesting complex II protein Lhcb4; Provisional
 13-286 0e+00

photosystem II light-harvesting complex II protein Lhcb4; Provisional


Pssm-ID: 177781  Cd Length: 286  Bit Score: 581.75  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231990   13 IMGTRVvSDISSNSSRFTARFGFGTKKASPKKAK----TVISDRPLWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQ 88
Cdd:PLN00187  10 FMGTRV-PDVASNSGRIVARFGFGKKKKAAKKAKkkssKVGADRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQ 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231990   89 FDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKV 168
Cdd:PLN00187  89 FDLDSLDQNLAKNLAGDVIGTRTEASEIKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALSVEALTGVTWQDAGKV 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231990  169 ELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMV 248
Cdd:PLN00187 169 ELVDGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMV 248

                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 15231990  249 GFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS 286
Cdd:PLN00187 249 AFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS 286
PLN00099 PLN00099
light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
 20-282 1.95e-56

light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional


Pssm-ID: 177717  Cd Length: 243  Bit Score: 181.76  E-value: 1.95e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231990   20 SDISSNSSRFTARFGFGTKKASPKKakTVISDrplWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEylqfdldsldqnla 99
Cdd:PLN00099  17 SLLSSSKSKFASSVPLPNANGSSRV--TMSAD---WMPGQPRPPYLDGSAPGDFGFDPLRLGEVPE-------------- 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231990  100 knlygevigtrteavdpkstpfqpysevfGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDG--SSYL 177
Cdd:PLN00099  78 -----------------------------NLERYKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAAIPGgqATYL 128

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231990  178 GQPLPF-SISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFfDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQ 256
Cdd:PLN00099 129 GNPVPWgTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAF-DPLGYSKDPKKFEEYKVKEIKNGRLALLAFVGFCVQ 207

                        250       260
                 ....*....|....*....|....*..
gi 15231990  257 AAA-TGKGPLNNWATHLSDPLHTTIID 282
Cdd:PLN00099 208 QSAyPGTGPLENLATHLADPWHNNIGD 234
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
61-258 2.12e-52

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 168.64  E-value: 2.12e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231990    61 SPEYLDGSLVGDYGFDPFGLGKPAEylqfdldsldqnlaknlygevigtrteavdpkstpfqpysevfGLQRFRECELIH 140
Cdd:pfam00504   1 PPAYLDGSLPGDYGFDPLGLSADPE-------------------------------------------TFKRYREAELKH 37

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231990   141 GRWAMLATLGAITVEWLTGVT------WQDAGKVELVdgssylgqplPFSISTLIW-IEVLVIGYIEFQRNAE------L 207
Cdd:pfam00504  38 GRWAMLAVLGALVPEALGKLGggnepvWFEAGAVALH----------AQSVPTLLAlQILLLMGFLELARWQGgkapglG 107

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 15231990   208 DSEKRLYPGGKFFDPLGLAS-DPVKKAQLQLAEIKHARLAMVGFLGFAVQAA 258
Cdd:pfam00504 108 GGGDRGYPGGFGFDPLGLAKkDPETLAELKLKELKNGRLAMIAFLGFFVQEL 159
PLN00147 PLN00147
light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
 14-287 2.32e-49

light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional


Pssm-ID: 215076 [Multi-domain]  Cd Length: 252  Bit Score: 163.89  E-value: 2.32e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231990   14 MGTRVVSDISSNSSRFTARFGfgTKKASPKKAKTVISD-RPLWFPGAKSPEYLDGSLVGDYGFDPFGLGKpaeylqfdld 92
Cdd:PLN00147   8 TTGGFLHQPRDSSSHCTRSIS--SVAASSGGINPVVAQeRPTWLPGLDPPPHLDGTLAGDFGFDPLGLGE---------- 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231990   93 sldqnlaknlygevigtrteavDPKStpfqpysevfgLQRFRECELIHGRWAMLATLGAITVEWL--TGVT----WQDAG 166
Cdd:PLN00147  76 ----------------------DPES-----------LKWYVQAELVHSRFAMAGVAGILFTDLLrvTGIRnlpvWYEAG 122

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231990  167 KVELVDGSSylgqplpfsiSTLIWIEVLVIGYIEFQR-------------------NAELDSEKRLYPGGKFFDPLGLAS 227
Cdd:PLN00147 123 AVKFEFAST----------RTLFVVQLLLMGFAETKRymdfvspgsqakegsffglEAALEGLEPGYPGGPLFNPLGLAK 192

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231990  228 DPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS 287
Cdd:PLN00147 193 DIENAHDWKLKEIKNGRLAMVAMLGFFVQASVTHTGPIDNLLTHLSDPWHKTIIQTLSHS 252
PLN00048 PLN00048
photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
 13-284 1.11e-43

photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional


Pssm-ID: 177680 [Multi-domain]  Cd Length: 262  Bit Score: 149.62  E-value: 1.11e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231990   13 IMGTRVVSDISSNSSRFTARfgfgtkkASPKKAKTVISDRPLWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFdld 92
Cdd:PLN00048  10 ALSSSAARSSSAKKARFVVR-------AEATPPAKQGADRQLWFASKQSLSYLDGTLPGDFGFDPLGLSDPEGAGGF--- 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231990   93 sldqnlaknlygevigtrteaVDPKstpFQPYSEVfglqrfrecelIHGRWAMLATLGAITVEWL---------TGVTWQ 163
Cdd:PLN00048  80 ---------------------IEPQ---WLAYGEV-----------INGRFAMLGAAGAIAPEILgkaglipqeTALPWF 124

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231990  164 DAGKVELVDGSSYLGQPLpfsisTLIWIEVLVIGYIEFQRNAE------------LDSEKRL-------YPGGKFFDPLG 224
Cdd:PLN00048 125 QSGVIPPAGTYDYWADPY-----TLFVLEMALMGFAEHRRAQDyykpgsmgkqyfLGLEKGLggsgnpaYPGGPFFNPLG 199

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231990  225 LASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTF 284
Cdd:PLN00048 200 FGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVGPFQNLLDHLADPVNNNVLTNL 259
PLN00025 PLN00025
photosystem II light harvesting chlorophyll a/b binding protein; Provisional
 51-275 4.41e-41

photosystem II light harvesting chlorophyll a/b binding protein; Provisional


Pssm-ID: 215033 [Multi-domain]  Cd Length: 262  Bit Score: 142.96  E-value: 4.41e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231990   51 DRPLW---FPGAkSPEYLDGSLVGDYGFDPFGLgkpaeylqfdldsldqnlaknlygevigtrteAVDPkstpfqpysEV 127
Cdd:PLN00025  50 DRPKYlgpFSGE-TPSYLTGEFPGDYGWDTAGL--------------------------------SADP---------ET 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231990  128 FglQRFRECELIHGRWAMLATLGAITVEWLT--GVT-----WQDAGKVELVDGS-SYLGQP-LPFSISTL-IW-IEVLVI 196
Cdd:PLN00025  88 F--ARNRELEVIHARWAMLGALGCVTPELLAknGVKfgeavWFKAGAQIFSEGGlDYLGNPsLVHAQSILaIWaCQVVLM 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231990  197 GYIEFQRNAE------LDsekRLYPGGKFfDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWAT 270
Cdd:PLN00025 166 GAVEGYRVNGgplgegLD---PLYPGGSF-DPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLAD 241


                 ....*
gi 15231990  271 HLSDP 275
Cdd:PLN00025 242 HLADP 246
PLN00098 PLN00098
light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
 51-286 5.25e-41

light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional


Pssm-ID: 177716  Cd Length: 267  Bit Score: 142.74  E-value: 5.25e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231990   51 DRPLWFPGAKSPEYLDGSLVGDYGFDPFGLGKpaeylqfdldsldqnlaknlygevigtrteavDPKStpfqpysevfgL 130
Cdd:PLN00098  61 DRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGS--------------------------------DPEL-----------L 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231990  131 QRFRECELIHGRWAMLATLGAITVEWLTGV------TWQDAGKVElvdgssYLGQPlpfsiSTLIWIEVLVIGYIEFQRN 204
Cdd:PLN00098  98 KWFAQAELMHSRWAMLAVAGILIPECLERLgfienfSWYDAGARE------YFADP-----TTLFVVQMVLMGWAEGRRW 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231990  205 AEL------DSEKRL-----------YPGGKFFDPL--GLAS-DPVkkAQLQLAEIKHARLAMVGFLGFAVQAAATGKGP 264
Cdd:PLN00098 167 ADLikpgcvDIEPKLpnktnpkpdvgYPGGLWFDPMmwGRGSpEPV--MVLRTKEIKNGRLAMLAFVGFCFQAVYTGEGP 244

                        250       260
                 ....*....|....*....|..
gi 15231990  265 LNNWATHLSDPLHTTIIDTFSS 286
Cdd:PLN00098 245 IENLMAHLADPGHCNVFSAFTS 266
PLN00100 PLN00100
light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
 14-287 2.59e-37

light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional


Pssm-ID: 215054  Cd Length: 246  Bit Score: 132.69  E-value: 2.59e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231990   14 MGTRVVSDISSNSSRFTArfgfGTKKASPKKAKTVISDRPLWFPGAKSPEYLDGSLVGDYGFDPFGLGkpaeylqfdlds 93
Cdd:PLN00100   1 MASLTTASAGANRVRVSA----GVSTTRRPRVRVAARARPMWYPGATAPKYLDGTMAGDYGFDPLRLG------------ 64

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231990   94 ldqnlaknlygevigtrteaVDPKSTPFqpysevfglqrFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELvdg 173
Cdd:PLN00100  65 --------------------ANPETLPY-----------LQEAELMNGRWAMAATAGILFTDAVGLPKFWEAGAEKY--- 110

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231990  174 ssylGQPLPfsisTLIWIEVLVIGYIEFQR-NAELDSEKRLYPGGKFFDPLGLASDPVKkaqlqLAEIKHARLAMVGFLG 252
Cdd:PLN00100 111 ----GLDLQ----TLVLIQVVVMAVLEAARyRGFMKTGESGVLSFFPFDPTGMDSPEMK-----VKEVKNGRLAMLAFLG 177

                        250       260       270
                 ....*....|....*....|....*....|....*
gi 15231990  253 FAVQAAATGKGPLNNWATHLSDPLHTTIidtFSSS 287
Cdd:PLN00100 178 MVSQYAVTGKSPLEGLKAHMANPGHVNI---FTSS 209
PLN00097 PLN00097
photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
 27-280 2.25e-36

photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional


Pssm-ID: 165670 [Multi-domain]  Cd Length: 244  Bit Score: 130.13  E-value: 2.25e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231990   27 SRFTARFGFGTKKASPKK--AKTVISDRPLWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFdldsldqnlaknlyg 104
Cdd:PLN00097  17 SRTVRPRGVASKARASRGpgAVAAAADRPTWLPGKAAAAHLDGSLPCDYGFDPLNLGADPEMLKW--------------- 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231990  105 evigtrteavdpkstpfqpysevfglqrFRECELIHGRWAMLATLGAITVEWLTGV------TWQDAGKVelvDGSSYLG 178
Cdd:PLN00097  82 ----------------------------FVQAELMHARWAMLGLAGCVAPELLTKIgmadlpNWIDAAKW---DGYWAGA 130

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231990  179 QPLPF-SISTLIWIEVL---------------VIGYIEFQRNAELDsekrlYPGGkFFDPLGLASDPVKKAQLQLAEIKH 242
Cdd:PLN00097 131 GPLFFiQMAMFNWAEIRrwqdmkapgsmnedpLFGANKGDTNTDVG-----YPKG-LFDKFGWAKDEKKAAELKLKEIAN 204

                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 15231990  243 ARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTI 280
Cdd:PLN00097 205 GRLAMLAFLGCCAQAIQTGTGPVDNLFSHLADPGHNGI 242
PLN00171 PLN00171
photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
 51-284 5.51e-36

photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional


Pssm-ID: 215088  Cd Length: 324  Bit Score: 131.08  E-value: 5.51e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231990   51 DRPLWFPGA--KSPEYLDGSLVGDYGFDPFGLGKpaeylqfdldsldqnlaknlygevigtrteavDPKStpfqpysevf 128
Cdd:PLN00171 107 ERPRWLGPIpyDYPDHLTGELPGDYGFDIAGLGK--------------------------------DPVA---------- 144

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231990  129 gLQRFRECELIHGRWAMLATLGAITVEWL--TGV------TWQDAGKVELV-DGSSYLGQP-LPFSISTLIWI----EVL 194
Cdd:PLN00171 145 -FDKYFNFEILHARWAMLAALGVVIPEVLdlFGAvhfaepVWWRVGYAKLQgDTLDYLGIPgLHIAGSQGVIViaicQAL 223

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231990  195 VIGYIEFQRNAELDSEKRL---------YPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPL 265
Cdd:PLN00171 224 LMVGPEYARYCGIEALEPLgiylpgdinYPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPV 303

                        250
                 ....*....|....*....
gi 15231990  266 NNWATHLSDPLHTTIIDTF 284
Cdd:PLN00171 304 QNLVDHLSDPLHNNLLSSL 322
PLN00101 PLN00101
Photosystem I light-harvesting complex type 4 protein; Provisional
 22-285 6.61e-36

Photosystem I light-harvesting complex type 4 protein; Provisional


Pssm-ID: 215055 [Multi-domain]  Cd Length: 250  Bit Score: 128.88  E-value: 6.61e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231990   22 ISSNSSRFTARFGFGTKKASPKKAKTVISDRPLWFPGAKSPEYLDGSLVGDYGFDPFGLgkpaeylqfdldsldqnlakn 101
Cdd:PLN00101  23 LSGSSSKLNRELSFKPMPSSATRSFKVEAKKGEWLPGLASPGYLNGSLPGDNGFDPLGL--------------------- 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231990  102 lygevigtrteAVDPKStpfqpysevfgLQRFRECELIHGRWAMLATLGAITVEWLTGV------TWQDAGKVELVDGSS 175
Cdd:PLN00101  82 -----------AEDPEN-----------LKWFVQAELVNGRWAMLGVAGMLLPEVFTKIgiinapQWYDAGKAEYFASSS 139

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231990  176 ylgqplpfsisTLIWIEVLVIGYIEFQR-----------------NAELDSEKRLYPGGkFFDPLGLAsdPVKKAQLQla 238
Cdd:PLN00101 140 -----------TLFVIEFILFHYVEIRRwqdiknpgsvnqdpifkQYSLPPNEVGYPGG-IFNPLNFA--PTEEAKEK-- 203

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*..
gi 15231990  239 EIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFS 285
Cdd:PLN00101 204 ELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIVQTLS 250
PLN00170 PLN00170
photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
 38-265 6.16e-33

photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional


Pssm-ID: 215087 [Multi-domain]  Cd Length: 255  Bit Score: 121.19  E-value: 6.16e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231990   38 KKASPKKAktvisdrplWFPGAKS------PEYLDGSLVGDYGFDPFGLGKPAEYLQFdldsldqnlaknlygevigtrt 111
Cdd:PLN00170  46 AAAQPKKS---------WIPAVKGggnlvdPEWLDGSLPGDYGFDPLGLGKDPAFLKW---------------------- 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231990  112 eavdpkstpfqpysevfglqrFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVElvdgssylGQPLPFSISTLIWI 191
Cdd:PLN00170  95 ---------------------YREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADP--------GAIAPFSFGSLLGT 145

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231990  192 EVLVIGYIEFQR-----NAELDSEK------------------RLYPGGKFFDPLGLAS---------DPVKKAQLQLAE 239
Cdd:PLN00170 146 QLLLMGWVESKRwvdffNPDSQSVEwatpwsrtaenfanatglQGYPGGKFFDPLGLAGtvkdgvyipDFEKLERLKLAE 225

                        250       260
                 ....*....|....*....|....*.
gi 15231990  240 IKHARLAMVGFLGFAVQaAATGKGPL 265
Cdd:PLN00170 226 IKHARLAMVAMLIFYFE-AGQGKTPL 250
PLN00089 PLN00089
fucoxanthin-chlorophyll a/c binding protein; Provisional
 133-263 2.73e-13

fucoxanthin-chlorophyll a/c binding protein; Provisional


Pssm-ID: 177710 [Multi-domain]  Cd Length: 209  Bit Score: 67.40  E-value: 2.73e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231990  133 FRECELIHGRWAMLATLGAITVEW--LTGVTWQDAGKVELVDGSSYLGQPLPFsISTLIWIEvLVIGYIEFQRNAELDSE 210
Cdd:PLN00089  75 FRESELKHGRAAMLAVAGFIAPDFvrIPGEAYSFAAIPKTIDAHDALLKSGAM-IQIFAWIG-FVDLAVSAPAAAAAAEF 152

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 15231990  211 KRLyPGGKFFDPLGLA-SDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKG 263
Cdd:PLN00089 153 DRT-PGDFGFDLLALYpKDAAKMEKKKDKELKNGRLAMVAIGGIATGSAITGHG 205
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
205-263 2.08e-11

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 60.78  E-value: 2.08e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 15231990   205 AELDSEkrlYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKG 263
Cdd:pfam00504   3 AYLDGS---LPGDYGFDPLGLSADPETFKRYREAELKHGRWAMLAVLGALVPEALGKLG 58
PLN00120 PLN00120
fucoxanthin-chlorophyll a-c binding protein; Provisional
 219-258 1.20e-05

fucoxanthin-chlorophyll a-c binding protein; Provisional


Pssm-ID: 215063  Cd Length: 202  Bit Score: 45.12  E-value: 1.20e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 15231990  219 FFDPLGLAS--DPVKKAQLQLAEIKHARLAMVGFLGFAVQAA 258
Cdd:PLN00120  46 FFDPLGLVDdgDQEKFDRLRYVEIKHGRISMLAVVGYLVTEA 87
PLN00120 PLN00120
fucoxanthin-chlorophyll a-c binding protein; Provisional
 132-255 1.91e-04

fucoxanthin-chlorophyll a-c binding protein; Provisional


Pssm-ID: 215063  Cd Length: 202  Bit Score: 41.65  E-value: 1.91e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231990  132 RFRECELIHGRWAMLATLGAITVEwlTGVTWqdAGKVELvDGSSYLGQP----LPFSISTLIWIEVLV-IGYIE--FQRN 204
Cdd:PLN00120  63 RLRYVEIKHGRISMLAVVGYLVTE--AGIRL--PGDIDY-SGTSFSDIPngfaALDAIPTAGLLQILAfIGFLElaVMKD 137

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 15231990  205 AELDSEkrlYPG---GKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAV 255
Cdd:PLN00120 138 ITGEGE---FVGdfrNGYIDFGWDSFDEETKLKKRAIELNQGRAAQMGILALMV 188
PLN00014 PLN00014
light-harvesting-like protein 3; Provisional
 130-221 2.04e-03

light-harvesting-like protein 3; Provisional


Pssm-ID: 177653 [Multi-domain]  Cd Length: 250  Bit Score: 38.69  E-value: 2.04e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231990  130 LQRFR--ECELIHGRWAMLATLGAITVEWLTGvtwqdagkVELVD-GSSYLGQPLPFsistliwieVLVIGYIEFQRNAE 206
Cdd:PLN00014 154 VKRFHlpEAELLNGRAAMVGFFMAYLVDSLTG--------VGLVDqMGNFFCKTLLF---------VTVAGVLLIRKNED 216

                         90
                 ....*....|....*
gi 15231990  207 LDSEKRLYPGGKFFD 221
Cdd:PLN00014 217 LDTLKKLADEATFYD 231
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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