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Conserved domains on  [gi|15231951|ref|NP_187476|]
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alphavirus core family protein (DUF3411) [Arabidopsis thaliana]

Protein Classification

RETICULATA family protein( domain architecture ID 10570993)

RETICULATA family protein similar to Arabidopsis thaliana RETICULATA and RETICULATA-RELATED proteins that may play a role in leaf development, and is required for leaf mesophyll cell division in the early stages of leaf organogenesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RETICULATA-like pfam11891
Protein RETICULATA-related; This entry represents RETICULATA and related proteins from plants. ...
 111-280 3.20e-86

Protein RETICULATA-related; This entry represents RETICULATA and related proteins from plants. Arabidopsis RETICULATA protein is involved in differential development of bundle sheath and mesophyll cell chloroplasts.


:

Pssm-ID: 432167  Cd Length: 177  Bit Score: 257.13  E-value: 3.20e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231951   111 RVAADPQFPFKVLMEEIVGLSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFVLMYMLAPTAATLGSSQ---TLPGIF 187
Cdd:pfam11891   2 RLLADPSFLFKLLIEEAIGVGASLLAEYEKRGERFWNELDLVFADVVVGSVVNFALVWLLAPTRSYGSTSAfagALQNLL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231951   188 RNCPSsHMFEQ----GSFTVMNRFGTLVYKGMVFASVGLAAGLVGTAISNGLIMLRKKMDPSFETPNKPPPTVLNSLTWA 263
Cdd:pfam11891  82 GSLPN-NAFEKsypgREFTLQQRIAAFFYKGAELAAVGFAAGLVGTGLSNALIALRKKMDPSFEPSVKVPPVVKNALGYG 160

                         170
                  ....*....|....*..
gi 15231951   264 THMGVSANARYQTLNGI 280
Cdd:pfam11891 161 AFMGVSSNLRYQILAGL 177
 
Name Accession Description Interval E-value
RETICULATA-like pfam11891
Protein RETICULATA-related; This entry represents RETICULATA and related proteins from plants. ...
 111-280 3.20e-86

Protein RETICULATA-related; This entry represents RETICULATA and related proteins from plants. Arabidopsis RETICULATA protein is involved in differential development of bundle sheath and mesophyll cell chloroplasts.


Pssm-ID: 432167  Cd Length: 177  Bit Score: 257.13  E-value: 3.20e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231951   111 RVAADPQFPFKVLMEEIVGLSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFVLMYMLAPTAATLGSSQ---TLPGIF 187
Cdd:pfam11891   2 RLLADPSFLFKLLIEEAIGVGASLLAEYEKRGERFWNELDLVFADVVVGSVVNFALVWLLAPTRSYGSTSAfagALQNLL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231951   188 RNCPSsHMFEQ----GSFTVMNRFGTLVYKGMVFASVGLAAGLVGTAISNGLIMLRKKMDPSFETPNKPPPTVLNSLTWA 263
Cdd:pfam11891  82 GSLPN-NAFEKsypgREFTLQQRIAAFFYKGAELAAVGFAAGLVGTGLSNALIALRKKMDPSFEPSVKVPPVVKNALGYG 160

                         170
                  ....*....|....*..
gi 15231951   264 THMGVSANARYQTLNGI 280
Cdd:pfam11891 161 AFMGVSSNLRYQILAGL 177
 
Name Accession Description Interval E-value
RETICULATA-like pfam11891
Protein RETICULATA-related; This entry represents RETICULATA and related proteins from plants. ...
 111-280 3.20e-86

Protein RETICULATA-related; This entry represents RETICULATA and related proteins from plants. Arabidopsis RETICULATA protein is involved in differential development of bundle sheath and mesophyll cell chloroplasts.


Pssm-ID: 432167  Cd Length: 177  Bit Score: 257.13  E-value: 3.20e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231951   111 RVAADPQFPFKVLMEEIVGLSACVLGDMASRPNFGLNELDFVFSTLVVGSILNFVLMYMLAPTAATLGSSQ---TLPGIF 187
Cdd:pfam11891   2 RLLADPSFLFKLLIEEAIGVGASLLAEYEKRGERFWNELDLVFADVVVGSVVNFALVWLLAPTRSYGSTSAfagALQNLL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231951   188 RNCPSsHMFEQ----GSFTVMNRFGTLVYKGMVFASVGLAAGLVGTAISNGLIMLRKKMDPSFETPNKPPPTVLNSLTWA 263
Cdd:pfam11891  82 GSLPN-NAFEKsypgREFTLQQRIAAFFYKGAELAAVGFAAGLVGTGLSNALIALRKKMDPSFEPSVKVPPVVKNALGYG 160

                         170
                  ....*....|....*..
gi 15231951   264 THMGVSANARYQTLNGI 280
Cdd:pfam11891 161 AFMGVSSNLRYQILAGL 177
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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