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Conserved domains on  [gi|15231874|ref|NP_187439|]
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Pectin lyase-like superfamily protein [Arabidopsis thaliana]

Protein Classification

polysaccharide lyase domain-containing protein( domain architecture ID 139546)

polysaccharide lyase domain-containing protein may function as a hydrolase

Gene Ontology:  GO:0016787

Graphical summary

 Zoom to residue level

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List of domain hits

Name Accession Description Interval E-value
PL-6 super family cl19188
Polysaccharide Lyase Family 6; Polysaccharide Lyase Family 6 is a family of beta-helical ...
33-386 5.58e-127

Polysaccharide Lyase Family 6; Polysaccharide Lyase Family 6 is a family of beta-helical polysaccharide lyases. Members include alginate lyase (EC 4.2.2.3) and chondroitinase B (EC 4.2.2.19). Chondroitinase B is an enzyme that only cleaves the beta-(1,4)-linkage of dermatan sulfate (DS), leading to 4,5-unsaturated dermatan sulfate disaccharides as the product. DS is a highly sulfated, unbranched polysaccharide belonging to a family of glycosaminoglycans (GAGs) composed of alternating hexosamine (gluco- or galactosamine) and uronic acid (D-glucuronic or L-iduronic acid) moieties. DS contains alternating 1,4-beta-D-galactosamine (GalNac) and 1,3-alpha-L-iduronic acid units. The related chondroitin sulfate (CS) contains alternating GalNac and 1,3-beta-D-glucuronic acid units. Alginate lyases (known as either mannuronate (EC 4.2.2.3) or guluronate lyases (EC 4.2.2.11) catalyze the degradation of alginate, a copolymer of alpha-L-guluronate and its C5 epimer beta-D-mannuronate.


The actual alignment was detected with superfamily member PLN02188:

Pssm-ID: 450265 [Multi-domain]  Cd Length: 404  Bit Score: 371.49  E-value: 5.58e-127
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231874   33 SDITQALLKAFTSACQSSSPSKVVIPKGEFKLGEIEMRGPCKAPieVTLQGTVKA--DGNAIQGKEKWVVFGNIDGFKLN 110
Cdd:PLN02188  50 TDDSKAFMAAWKAACASTGAVTLLIPPGTYYIGPVQFHGPCTNV--SSLTFTLKAatDLSRYGSGNDWIEFGWVNGLTLT 127
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231874  111 GGGAFDGEGNAAWRVNNCHKTFECKKLPISIRFDFILNSEIRDISSIDAKNFHINVLGAKNMTMNNIKIVAPEDSPNTDG 190
Cdd:PLN02188 128 GGGTFDGQGAAAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVNSKFFHIALVECRNFKGSGLKISAPSDSPNTDG 207
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231874  191 IHLGRSDGVKILNSFISTGDDCISVGDGMKNLHVEKVTCGPGHGISVGSLGRYGHEQDVSGIKVINCTLQETDNGLRIKT 270
Cdd:PLN02188 208 IHIERSSGVYISDSRIGTGDDCISIGQGNSQVTITRIRCGPGHGISVGSLGRYPNEGDVTGLVVRDCTFTGTTNGIRIKT 287
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231874  271 WPSAACSTTASDIHFEDIILKDVSNPILIDQEYCPWNQCNKQKASTIKLVNISFKNIRGTSGNKDAVKLLCSKGYPCQNV 350
Cdd:PLN02188 288 WANSPGKSAATNMTFENIVMNNVTNPIIIDQKYCPFYSCESKYPSGVTLSDIYFKNIRGTSSSQVAVLLKCSRGVPCQGV 367
                        330       340       350
                 ....*....|....*....|....*....|....*.
gi 15231874  351 EIGDIDIKYNGADGPATFHCSNVSPKILGSQSPKAC 386
Cdd:PLN02188 368 YLQDVHLDLSSGEGGTSSSCENVRAKYIGTQIPPPC 403
 
Name Accession Description Interval E-value
PLN02188 PLN02188
polygalacturonase/glycoside hydrolase family protein
33-386 5.58e-127

polygalacturonase/glycoside hydrolase family protein


Pssm-ID: 215120 [Multi-domain]  Cd Length: 404  Bit Score: 371.49  E-value: 5.58e-127
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231874   33 SDITQALLKAFTSACQSSSPSKVVIPKGEFKLGEIEMRGPCKAPieVTLQGTVKA--DGNAIQGKEKWVVFGNIDGFKLN 110
Cdd:PLN02188  50 TDDSKAFMAAWKAACASTGAVTLLIPPGTYYIGPVQFHGPCTNV--SSLTFTLKAatDLSRYGSGNDWIEFGWVNGLTLT 127
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231874  111 GGGAFDGEGNAAWRVNNCHKTFECKKLPISIRFDFILNSEIRDISSIDAKNFHINVLGAKNMTMNNIKIVAPEDSPNTDG 190
Cdd:PLN02188 128 GGGTFDGQGAAAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVNSKFFHIALVECRNFKGSGLKISAPSDSPNTDG 207
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231874  191 IHLGRSDGVKILNSFISTGDDCISVGDGMKNLHVEKVTCGPGHGISVGSLGRYGHEQDVSGIKVINCTLQETDNGLRIKT 270
Cdd:PLN02188 208 IHIERSSGVYISDSRIGTGDDCISIGQGNSQVTITRIRCGPGHGISVGSLGRYPNEGDVTGLVVRDCTFTGTTNGIRIKT 287
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231874  271 WPSAACSTTASDIHFEDIILKDVSNPILIDQEYCPWNQCNKQKASTIKLVNISFKNIRGTSGNKDAVKLLCSKGYPCQNV 350
Cdd:PLN02188 288 WANSPGKSAATNMTFENIVMNNVTNPIIIDQKYCPFYSCESKYPSGVTLSDIYFKNIRGTSSSQVAVLLKCSRGVPCQGV 367
                        330       340       350
                 ....*....|....*....|....*....|....*.
gi 15231874  351 EIGDIDIKYNGADGPATFHCSNVSPKILGSQSPKAC 386
Cdd:PLN02188 368 YLQDVHLDLSSGEGGTSSSCENVRAKYIGTQIPPPC 403
Glyco_hydro_28 pfam00295
Glycosyl hydrolases family 28; Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2. ...
52-373 8.71e-101

Glycosyl hydrolases family 28; Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism.


Pssm-ID: 425588 [Multi-domain]  Cd Length: 319  Bit Score: 301.61  E-value: 8.71e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231874    52 PSKVVIPKGeFKLGEIEMrgpcKAPIEVTLQGTVKADGNAIQGKEKWVVFGNIDGFKLNGGgAFDGEGNAAWRvNNCHKT 131
Cdd:pfam00295   4 LSQILVPAG-FTLDLTGL----TSGTTVTFEGTTTFGYKEWNGKLIWISGSSITVTGASGG-TIDGQGQRWWD-GKGTKK 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231874   132 FECKKLPISIRFDFILNSEIRDISSIDAKNFHINVLGAKNMTMNNIKIVAPEDS---PNTDGIHLGRSDGVKILNSFIST 208
Cdd:pfam00295  77 NGGKKKPKFIYIHKVKNSKITGLNIKNSPVFHFSVQSGTDLTISDITIDNSAGDsngHNTDGFDVGSSSGVTISNTNIYN 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231874   209 GDDCISVGDGMkNLHVEKVTCGPGHGISVGSLGRYGhEQDVSGIKVINCTLQETDNGLRIKTWPsaACSTTASDIHFEDI 288
Cdd:pfam00295 157 QDDCIAINSGS-NISITNVTCGGGHGISIGSVGGRS-DNTVKNVTVKDSTVVNSDNGVRIKTIS--GATGTVSNITYENI 232
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231874   289 ILKDVS-NPILIDQEYCPWNQCNKQkASTIKLVNISFKNIRGTSGN-KDAVKLLCSKGYpCQNVEIGDIDIKYngadGPA 366
Cdd:pfam00295 233 VLSNISkYGIVIDQDYENGEPTGKP-TSGVKISDITFKNVTGTVASsATAVYLLCGDGS-CSGWTWSGVNITG----GKS 306

                  ....*..
gi 15231874   367 TFHCSNV 373
Cdd:pfam00295 307 TSKCKNV 313
Pgu1 COG5434
Polygalacturonase [Carbohydrate transport and metabolism];
36-358 1.52e-33

Polygalacturonase [Carbohydrate transport and metabolism];


Pssm-ID: 444185 [Multi-domain]  Cd Length: 373  Bit Score: 128.40  E-value: 1.52e-33
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231874  36 TQALLKAFTsACQSSSPSKVVIPKGEFKLGEIEMR---------GpckapieVTLQGTV-----KADGNAIQGKEKWV-- 99
Cdd:COG5434  26 TAAIQKAID-ACAAAGGGTVLVPAGTYLTGPIFLKsnvtlhlekG-------ATLLGSTdpadyPLVETRWEGGELKGys 97
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231874 100 --VFG-NIDGFKLNGGGAFDGEGNAAWRVNNchKTFECKKLPISI------RFDFILNSE---IRDISSIDAKNFHINVL 167
Cdd:COG5434  98 alIYAeNAENIAITGEGTIDGNGDAWWPWKK--EARQSGWVPVGAydylrpRLIQLKNCKnvlLEGVTLRNSPFWTIHPL 175
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231874 168 GAKNMTMNNIKIVAPEDSPNTDGIHLGRSDGVKILNSFISTGDDCISV-----GDGMKNLHVEKVT---C--GPGHG-IS 236
Cdd:COG5434 176 GCENVTVDGVTIDNPADAPNTDGIDPDSCRNVLIENCYIDTGDDAIAIksgrdADGRRNRPTENIVirnCtfRSGHGgIV 255
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231874 237 VGSlgryghE--QDVSGIKVINCTLQETDNGLRIKTwpSAACSTTASDIHFEDIILKDVS-NPILIDQEYcpwnQCNKQ- 312
Cdd:COG5434 256 IGS------EtsGGVRNVTVENCTFDGTDRGLRIKS--RRGRGGVVENITIRNITMRNVKgTPIFINLFY----EGDRGg 323
                       330       340       350       360
                ....*....|....*....|....*....|....*....|....*.
gi 15231874 313 KASTIKlvNISFKNIRGTsGNKDAVKLLCSKGYPCQNVEIGDIDIK 358
Cdd:COG5434 324 PTPTFR--NITISNVTAT-GAKSAILIAGLPEAPIENITLENVTIG 366
 
Name Accession Description Interval E-value
PLN02188 PLN02188
polygalacturonase/glycoside hydrolase family protein
33-386 5.58e-127

polygalacturonase/glycoside hydrolase family protein


Pssm-ID: 215120 [Multi-domain]  Cd Length: 404  Bit Score: 371.49  E-value: 5.58e-127
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231874   33 SDITQALLKAFTSACQSSSPSKVVIPKGEFKLGEIEMRGPCKAPieVTLQGTVKA--DGNAIQGKEKWVVFGNIDGFKLN 110
Cdd:PLN02188  50 TDDSKAFMAAWKAACASTGAVTLLIPPGTYYIGPVQFHGPCTNV--SSLTFTLKAatDLSRYGSGNDWIEFGWVNGLTLT 127
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231874  111 GGGAFDGEGNAAWRVNNCHKTFECKKLPISIRFDFILNSEIRDISSIDAKNFHINVLGAKNMTMNNIKIVAPEDSPNTDG 190
Cdd:PLN02188 128 GGGTFDGQGAAAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVNSKFFHIALVECRNFKGSGLKISAPSDSPNTDG 207
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231874  191 IHLGRSDGVKILNSFISTGDDCISVGDGMKNLHVEKVTCGPGHGISVGSLGRYGHEQDVSGIKVINCTLQETDNGLRIKT 270
Cdd:PLN02188 208 IHIERSSGVYISDSRIGTGDDCISIGQGNSQVTITRIRCGPGHGISVGSLGRYPNEGDVTGLVVRDCTFTGTTNGIRIKT 287
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231874  271 WPSAACSTTASDIHFEDIILKDVSNPILIDQEYCPWNQCNKQKASTIKLVNISFKNIRGTSGNKDAVKLLCSKGYPCQNV 350
Cdd:PLN02188 288 WANSPGKSAATNMTFENIVMNNVTNPIIIDQKYCPFYSCESKYPSGVTLSDIYFKNIRGTSSSQVAVLLKCSRGVPCQGV 367
                        330       340       350
                 ....*....|....*....|....*....|....*.
gi 15231874  351 EIGDIDIKYNGADGPATFHCSNVSPKILGSQSPKAC 386
Cdd:PLN02188 368 YLQDVHLDLSSGEGGTSSSCENVRAKYIGTQIPPPC 403
Glyco_hydro_28 pfam00295
Glycosyl hydrolases family 28; Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2. ...
52-373 8.71e-101

Glycosyl hydrolases family 28; Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism.


Pssm-ID: 425588 [Multi-domain]  Cd Length: 319  Bit Score: 301.61  E-value: 8.71e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231874    52 PSKVVIPKGeFKLGEIEMrgpcKAPIEVTLQGTVKADGNAIQGKEKWVVFGNIDGFKLNGGgAFDGEGNAAWRvNNCHKT 131
Cdd:pfam00295   4 LSQILVPAG-FTLDLTGL----TSGTTVTFEGTTTFGYKEWNGKLIWISGSSITVTGASGG-TIDGQGQRWWD-GKGTKK 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231874   132 FECKKLPISIRFDFILNSEIRDISSIDAKNFHINVLGAKNMTMNNIKIVAPEDS---PNTDGIHLGRSDGVKILNSFIST 208
Cdd:pfam00295  77 NGGKKKPKFIYIHKVKNSKITGLNIKNSPVFHFSVQSGTDLTISDITIDNSAGDsngHNTDGFDVGSSSGVTISNTNIYN 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231874   209 GDDCISVGDGMkNLHVEKVTCGPGHGISVGSLGRYGhEQDVSGIKVINCTLQETDNGLRIKTWPsaACSTTASDIHFEDI 288
Cdd:pfam00295 157 QDDCIAINSGS-NISITNVTCGGGHGISIGSVGGRS-DNTVKNVTVKDSTVVNSDNGVRIKTIS--GATGTVSNITYENI 232
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231874   289 ILKDVS-NPILIDQEYCPWNQCNKQkASTIKLVNISFKNIRGTSGN-KDAVKLLCSKGYpCQNVEIGDIDIKYngadGPA 366
Cdd:pfam00295 233 VLSNISkYGIVIDQDYENGEPTGKP-TSGVKISDITFKNVTGTVASsATAVYLLCGDGS-CSGWTWSGVNITG----GKS 306

                  ....*..
gi 15231874   367 TFHCSNV 373
Cdd:pfam00295 307 TSKCKNV 313
PLN02218 PLN02218
polygalacturonase ADPG
33-384 2.68e-81

polygalacturonase ADPG


Pssm-ID: 177865 [Multi-domain]  Cd Length: 431  Bit Score: 255.72  E-value: 2.68e-81
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231874   33 SDITQALLKAFTSACQSSSPSKVVIPKGE-FKLGEIEMRGPCKAPIEVTLQGTVKADGNAIQGKE--KWVVFGNIDGFKL 109
Cdd:PLN02218  81 TDDTQAFVNAWKKACSSNGAVNLLVPKGNtYLLKSIQLTGPCKSIRTVQIFGTLSASQKRSDYKDisKWIMFDGVNNLSV 160
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231874  110 NGG--GAFDGEGNAAWRvNNC--HKTFECKKLPISIRFDFILNSEIRDISSIDAKNFHINVLGAKNMTMNNIKIVAPEDS 185
Cdd:PLN02218 161 DGGstGVVDGNGETWWQ-NSCkrNKAKPCTKAPTALTFYNSKSLIVKNLRVRNAQQIQISIEKCSNVQVSNVVVTAPADS 239
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231874  186 PNTDGIHLGRSDGVKILNSFISTGDDCISVGDGMKNLHVEKVTCGPGHGISVGSLGRYGHEQDVSGIKVINCTLQETDNG 265
Cdd:PLN02218 240 PNTDGIHITNTQNIRVSNSIIGTGDDCISIESGSQNVQINDITCGPGHGISIGSLGDDNSKAFVSGVTVDGAKLSGTDNG 319
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231874  266 LRIKTWPSAacSTTASDIHFEDIILKDVSNPILIDQEYCPWNQCNKQKaSTIKLVNISFKNIRGTSGNKDAVKLLCSKGY 345
Cdd:PLN02218 320 VRIKTYQGG--SGTASNIIFQNIQMENVKNPIIIDQDYCDKSKCTSQQ-SAVQVKNVVYRNISGTSASDVAITFNCSKNY 396
                        330       340       350
                 ....*....|....*....|....*....|....*....
gi 15231874  346 PCQNVEIGDIDIKyngaDGPATfhCSNVSPKILGSQSPK 384
Cdd:PLN02218 397 PCQGIVLDNVNIK----GGKAT--CTNANVVDKGAVSPQ 429
PLN02793 PLN02793
Probable polygalacturonase
33-386 5.56e-80

Probable polygalacturonase


Pssm-ID: 215426 [Multi-domain]  Cd Length: 443  Bit Score: 252.49  E-value: 5.56e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231874   33 SDITQALLKAFTSACQSSSPSKVVIPKG-EFKLGEIEMRGPCKAPIEVTLQGTVKA--DGNAIQG--KEKWVVFGNIDGF 107
Cdd:PLN02793  66 TDDTQAFKEAWKMACSSKVKTRIVIPAGyTFLVRPIDLGGPCKAKLTLQISGTIIApkDPDVWKGlnPRKWLYFHGVNHL 145
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231874  108 KLNGGGAFDGEGNAAW-RVNNCHKTFECKKLPISIRFDFILNSEIRDISSIDAKNFHINVLGAKNMTMNNIKIVAPEDSP 186
Cdd:PLN02793 146 TVEGGGTVNGMGHEWWaQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDSQQMHIAFTNCRRVTISGLKVIAPATSP 225
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231874  187 NTDGIHLGRSDGVKILNSFISTGDDCISVGDGMKNLHVEKVTCGPGHGISVGSLGRYGHEQDVSGIKVINCTLQETDNGL 266
Cdd:PLN02793 226 NTDGIHISASRGVVIKDSIVRTGDDCISIVGNSSRIKIRNIACGPGHGISIGSLGKSNSWSEVRDITVDGAFLSNTDNGV 305
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231874  267 RIKTWPSAacSTTASDIHFEDIILKDVSNPILIDQEYCPWNQCNKQKASTIKLVNISFKNIRGTSGNKDAVKLLCSKGYP 346
Cdd:PLN02793 306 RIKTWQGG--SGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQTSAVKVENISFVHIKGTSATEEAIKFACSDSSP 383
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|
gi 15231874  347 CQNVEIGDIDIKYNGADGPATFhCSNVSPKILGSQSPKAC 386
Cdd:PLN02793 384 CEGLYLEDVQLLSSTGDFTESF-CWEAYGSSSGQVYPPPC 422
PLN02155 PLN02155
polygalacturonase
33-386 4.74e-78

polygalacturonase


Pssm-ID: 165802 [Multi-domain]  Cd Length: 394  Bit Score: 246.13  E-value: 4.74e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231874   33 SDITQALLKAFTSACQSSSPSKVVIPKGEFKLGEIEMRGPCKAPIEVTLQGTVKA--DGNAIQGKEKWVVFGNIDGFKLN 110
Cdd:PLN02155  41 TDSTAAFLKAWQGACGSASSATVVVPTGTFLLKVITFGGPCKSKITFQVAGTVVApeDYRTFGNSGYWILFNKVNRFSLV 120
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231874  111 GGgAFDGEGNAAWrvnNCHKTFE-CKKLPISIRFDFILNSEIRDISSIDAKNFHINVLGAKNMTMNNIKIVAPEDSPNTD 189
Cdd:PLN02155 121 GG-TFDARANGFW---SCRKSGQnCPPGVRSISFNSAKDVIISGVKSMNSQVSHMTLNGCTNVVVRNVKLVAPGNSPNTD 196
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231874  190 GIHLGRSDGVKILNSFISTGDDCISVGDGMKNLHVEKVTCGPGHGISVGSLGRYGHEQDVSGIKVINCTLQETDNGLRIK 269
Cdd:PLN02155 197 GFHVQFSTGVTFTGSTVQTGDDCVAIGPGTRNFLITKLACGPGHGVSIGSLAKELNEDGVENVTVSSSVFTGSQNGVRIK 276
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231874  270 TWPSAAcSTTASDIHFEDIILKDVSNPILIDQEYCPWNQCNKQKASTIKLVNISFKNIRGTSGNKDAVKLLCSKGYPCQN 349
Cdd:PLN02155 277 SWARPS-TGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCPNEYSGVKISQVTYKNIQGTSATQEAMKLVCSKSSPCTG 355
                        330       340       350
                 ....*....|....*....|....*....|....*..
gi 15231874  350 VEIGDIDIKYNGADgPATFHCSNVSPKILGSQSPKAC 386
Cdd:PLN02155 356 ITLQDIKLTYNKGT-PATSFCFNAVGKSLGVIQPTSC 391
PLN03010 PLN03010
polygalacturonase
33-373 9.49e-70

polygalacturonase


Pssm-ID: 215540 [Multi-domain]  Cd Length: 409  Bit Score: 224.88  E-value: 9.49e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231874   33 SDITQALLKAFTSACQSSSPSK-VVIPKGE-FKLGEIEMRGPCKA-PIEVTLQGTVKADGNAIQ----GKEKWVVFGNID 105
Cdd:PLN03010  60 TDDSNAFLQAWNATCGGEGNINtLLIPSGKtYLLQPIEFKGPCKStSIKVQLDGIIVAPSNIVAwsnpKSQMWISFSTVS 139
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231874  106 GFKLNGGGAFDGEGNAAWRVNNCHKtfeCKKLPISirfdfilnseirDISSIDAKNFHINVLGAKNMTMNNIKIVAPEDS 185
Cdd:PLN03010 140 GLMIDGSGTIDGRGSSFWEALHISK---CDNLTIN------------GITSIDSPKNHISIKTCNYVAISKINILAPETS 204
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231874  186 PNTDGIHLGRSDGVKILNSFISTGDDCISVGDGMKNLHVEKVTCGPGHGISVGSLGRYGHEQDVSGIKVINCTLQETDNG 265
Cdd:PLN03010 205 PNTDGIDISYSTNINIFDSTIQTGDDCIAINSGSSNINITQINCGPGHGISVGSLGADGANAKVSDVHVTHCTFNQTTNG 284
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231874  266 LRIKTWPSAacSTTASDIHFEDIILKDVSNPILIDQEYCPWNQCNKQKASTIKLVNISFKNIRGTSGNKDAVKLLCSKGY 345
Cdd:PLN03010 285 ARIKTWQGG--QGYARNISFENITLINTKNPIIIDQQYIDKGKLDATKDSAVAISNVKYVGFRGTTSNENAITLKCSAIT 362
                        330       340
                 ....*....|....*....|....*...
gi 15231874  346 PCQNVEIGDIDIKYNGADGPATfHCSNV 373
Cdd:PLN03010 363 HCKDVVMDDIDVTMENGEKPKV-ECQNV 389
PLN03003 PLN03003
Probable polygalacturonase At3g15720
9-373 1.94e-61

Probable polygalacturonase At3g15720


Pssm-ID: 178580 [Multi-domain]  Cd Length: 456  Bit Score: 204.91  E-value: 1.94e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231874    9 TIFIICLLGISANAEVFTIGSSSG--SDITQALLKAFTSACQSSSPSKVVIPKG-EFKLGEIEMRGPCK-APIEVTLQGT 84
Cdd:PLN03003  11 SLFFLQIFTSSNALDVTQFGAVGDgvTDDSQAFLKAWEAVCSGTGDGQFVVPAGmTFMLQPLKFQGSCKsTPVFVQMLGK 90
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231874   85 VKA--DGNAIQGKEKWVVFGNIDGFKLNGGGAFDGEGNAAWRvnncHKtfecKKLPISIRFDFILNSEIRDISSIDAKNF 162
Cdd:PLN03003  91 LVApsKGNWKGDKDQWILFTDIEGLVIEGDGEINGQGSSWWE----HK----GSRPTALKFRSCNNLRLSGLTHLDSPMA 162
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231874  163 HINVLGAKNMTMNNIKIVAPEDSPNTDGIHLGRSDGVKILNSFISTGDDCISVGDGMKNLHVEKVTCGPGHGISVGSLGR 242
Cdd:PLN03003 163 HIHISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSGTSNIHISGIDCGPGHGISIGSLGK 242
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231874  243 YGHEQDVSGIKVINCTLQETDNGLRIKTWPSAacSTTASDIHFEDIILKDVSNPILIDQEYCPWNQCNKQ--KASTIKLV 320
Cdd:PLN03003 243 DGETATVENVCVQNCNFRGTMNGARIKTWQGG--SGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKdrKSSAVEVS 320
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 15231874  321 NISFKNIRGTSGNKDAVKLLCSKGYPCQNVEIGDIDIKY--NGADGPATFHCSNV 373
Cdd:PLN03003 321 KVVFSNFIGTSKSEYGVDFRCSERVPCTEIFLRDMKIETasSGSGQVAQGQCLNV 375
Pgu1 COG5434
Polygalacturonase [Carbohydrate transport and metabolism];
36-358 1.52e-33

Polygalacturonase [Carbohydrate transport and metabolism];


Pssm-ID: 444185 [Multi-domain]  Cd Length: 373  Bit Score: 128.40  E-value: 1.52e-33
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231874  36 TQALLKAFTsACQSSSPSKVVIPKGEFKLGEIEMR---------GpckapieVTLQGTV-----KADGNAIQGKEKWV-- 99
Cdd:COG5434  26 TAAIQKAID-ACAAAGGGTVLVPAGTYLTGPIFLKsnvtlhlekG-------ATLLGSTdpadyPLVETRWEGGELKGys 97
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231874 100 --VFG-NIDGFKLNGGGAFDGEGNAAWRVNNchKTFECKKLPISI------RFDFILNSE---IRDISSIDAKNFHINVL 167
Cdd:COG5434  98 alIYAeNAENIAITGEGTIDGNGDAWWPWKK--EARQSGWVPVGAydylrpRLIQLKNCKnvlLEGVTLRNSPFWTIHPL 175
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231874 168 GAKNMTMNNIKIVAPEDSPNTDGIHLGRSDGVKILNSFISTGDDCISV-----GDGMKNLHVEKVT---C--GPGHG-IS 236
Cdd:COG5434 176 GCENVTVDGVTIDNPADAPNTDGIDPDSCRNVLIENCYIDTGDDAIAIksgrdADGRRNRPTENIVirnCtfRSGHGgIV 255
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231874 237 VGSlgryghE--QDVSGIKVINCTLQETDNGLRIKTwpSAACSTTASDIHFEDIILKDVS-NPILIDQEYcpwnQCNKQ- 312
Cdd:COG5434 256 IGS------EtsGGVRNVTVENCTFDGTDRGLRIKS--RRGRGGVVENITIRNITMRNVKgTPIFINLFY----EGDRGg 323
                       330       340       350       360
                ....*....|....*....|....*....|....*....|....*.
gi 15231874 313 KASTIKlvNISFKNIRGTsGNKDAVKLLCSKGYPCQNVEIGDIDIK 358
Cdd:COG5434 324 PTPTFR--NITISNVTAT-GAKSAILIAGLPEAPIENITLENVTIG 366
NosD COG3420
Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion ...
10-215 2.10e-03

Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion transport and metabolism];


Pssm-ID: 442646 [Multi-domain]  Cd Length: 343  Bit Score: 39.90  E-value: 2.10e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231874  10 IFIICLLGISANAEVftigsSSGSDITQALLKAftsacqsSSPSKVVIPKGEFKlGEIEMRGPckapieVTLQGtvkADG 89
Cdd:COG3420   4 LLLLLLLAGAAAAAT-----APGDSLQAAIDAA-------PPGDTIEVPPGTYE-GNIVIDKP------LTLIG---EGG 61
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15231874  90 NAIQGKEKWVVFG------NIDGFKLNGGGAFDGEGNAAWRVNNCHktfeckklpisirfdfilNSEIRDiSSIDAKNFH 163
Cdd:COG3420  62 AVIDGGGKGTVITitadnvTVRGLTITGSGDSLTDDDAGIYVRGAD------------------NAVIEN-NRIENNLFG 122
                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|....
gi 15231874 164 INVLGAKNMTMNNIKIVAPEDSPNT--DGIHLGRSDGVKILNSFISTGDDCISV 215
Cdd:COG3420 123 IYLEGSDNNVIRNNTISGNRDLRADrgNGIHLWNSPGNVIEGNTISGGRDGIYL 176
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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