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Conserved domains on  [gi|30680320|ref|NP_187406|]
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Far-red impaired responsive (FAR1) family protein [Arabidopsis thaliana]

Protein Classification

FHY3/FAR1 family protein( domain architecture ID 10503830)

FHY3/FAR1 family protein similar to FAR-RED ELONGATED HYPOCOTYL 3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) which are transcription factors that play multiple roles in a wide range of cellular processes and are crucial for plant growth and development, and to transposases of the Mutator-like element (MULE)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FAR1 pfam03101
FAR1 DNA-binding domain; This domain contains a WRKY like fold and is therefore most likely a ...
 47-136 4.90e-41

FAR1 DNA-binding domain; This domain contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.


:

Pssm-ID: 335217 [Multi-domain]  Cd Length: 90  Bit Score: 134.77  E-value: 4.90e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30680320    47 SFYDNYATCMGFVMRVDAFRRSMRDGTVVWRRLVCNKEGFRRSRPRRSESRKPRAITREGCKALIVVKREKSGTWLVTKF 126
Cdd:pfam03101   1 EFYNEYARRVGFSVRVKKSRRSRNDGEIIRRKFVCSKEGFKQPKQRTGEARRPRPSTRTGCKAMIVVKRESDGKWVVTQF 80

                          90
                  ....*....|
gi 30680320   127 EKEHNHPLLP 136
Cdd:pfam03101  81 VKEHNHELLP 90
 
Name Accession Description Interval E-value
FAR1 pfam03101
FAR1 DNA-binding domain; This domain contains a WRKY like fold and is therefore most likely a ...
 47-136 4.90e-41

FAR1 DNA-binding domain; This domain contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.


Pssm-ID: 335217 [Multi-domain]  Cd Length: 90  Bit Score: 134.77  E-value: 4.90e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30680320    47 SFYDNYATCMGFVMRVDAFRRSMRDGTVVWRRLVCNKEGFRRSRPRRSESRKPRAITREGCKALIVVKREKSGTWLVTKF 126
Cdd:pfam03101   1 EFYNEYARRVGFSVRVKKSRRSRNDGEIIRRKFVCSKEGFKQPKQRTGEARRPRPSTRTGCKAMIVVKRESDGKWVVTQF 80

                          90
                  ....*....|
gi 30680320   127 EKEHNHPLLP 136
Cdd:pfam03101  81 VKEHNHELLP 90
FHY3 PLN03097
Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
 6-136 1.58e-16

Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional


Pssm-ID: 178645 [Multi-domain]  Cd Length: 846  Bit Score: 77.73  E-value: 1.58e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30680320    6 LPEEDVEMMENSDVMKTV-TDEASPM---------------VEPFIGMEFESEEAAKSFYDNYATCMGFVMRVDAFRRSM 69
Cdd:PLN03097  31 LHNGDMEIGNVVDVAEEVlSIDGGDMnsptgelvefkedtnLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSK 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30680320   70 RDGTVVWRRLVCNKEGfrRSRPRRSESRKPRA---------------ITREGCKALIVVKREKSGTWLVTKFEKEHNHPL 134
Cdd:PLN03097 111 TSREFIDAKFACSRYG--TKREYDKSFNRPRArqtkqdpengtgrrsCAKTDCKASMHVKRRPDGKWVIHSFVKEHNHEL 188


                 ..
gi 30680320  135 LP 136
Cdd:PLN03097 189 LP 190
 
Name Accession Description Interval E-value
FAR1 pfam03101
FAR1 DNA-binding domain; This domain contains a WRKY like fold and is therefore most likely a ...
 47-136 4.90e-41

FAR1 DNA-binding domain; This domain contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.


Pssm-ID: 335217 [Multi-domain]  Cd Length: 90  Bit Score: 134.77  E-value: 4.90e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30680320    47 SFYDNYATCMGFVMRVDAFRRSMRDGTVVWRRLVCNKEGFRRSRPRRSESRKPRAITREGCKALIVVKREKSGTWLVTKF 126
Cdd:pfam03101   1 EFYNEYARRVGFSVRVKKSRRSRNDGEIIRRKFVCSKEGFKQPKQRTGEARRPRPSTRTGCKAMIVVKRESDGKWVVTQF 80

                          90
                  ....*....|
gi 30680320   127 EKEHNHPLLP 136
Cdd:pfam03101  81 VKEHNHELLP 90
FHY3 PLN03097
Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
 6-136 1.58e-16

Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional


Pssm-ID: 178645 [Multi-domain]  Cd Length: 846  Bit Score: 77.73  E-value: 1.58e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30680320    6 LPEEDVEMMENSDVMKTV-TDEASPM---------------VEPFIGMEFESEEAAKSFYDNYATCMGFVMRVDAFRRSM 69
Cdd:PLN03097  31 LHNGDMEIGNVVDVAEEVlSIDGGDMnsptgelvefkedtnLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSK 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30680320   70 RDGTVVWRRLVCNKEGfrRSRPRRSESRKPRA---------------ITREGCKALIVVKREKSGTWLVTKFEKEHNHPL 134
Cdd:PLN03097 111 TSREFIDAKFACSRYG--TKREYDKSFNRPRArqtkqdpengtgrrsCAKTDCKASMHVKRRPDGKWVIHSFVKEHNHEL 188


                 ..
gi 30680320  135 LP 136
Cdd:PLN03097 189 LP 190
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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