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Conserved domains on  [gi|15232066|ref|NP_186771|]
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homeobox protein 20 [Arabidopsis thaliana]

Protein Classification

homeobox-leucine zipper protein( domain architecture ID 11079011)

homeobox-leucine zipper protein is a transcription factor that may function in plant development and/or in stress adaptation

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Homeodomain pfam00046
Homeodomain;
87-140 2.52e-16

Homeodomain;


:

Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 71.38  E-value: 2.52e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 15232066    87 KKKR--LQLEQVKALEKSFELGNKLEPERKIQLAKALGMQPRQIAIWFQNRRARWK 140
Cdd:pfam00046   1 RRKRttFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWK 56
HALZ pfam02183
Homeobox associated leucine zipper;
142-183 2.49e-13

Homeobox associated leucine zipper;


:

Pssm-ID: 460477 [Multi-domain]  Cd Length: 42  Bit Score: 62.92  E-value: 2.49e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 15232066   142 RQLERDYDSLKKQFESLKSDNASLLAYNKKLLAEVMALKNKE 183
Cdd:pfam02183   1 KQLERDYDVLKASYDALKSDFDSLKKENQKLQAELQELKEKL 42
 
Name Accession Description Interval E-value
Homeodomain pfam00046
Homeodomain;
87-140 2.52e-16

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 71.38  E-value: 2.52e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 15232066    87 KKKR--LQLEQVKALEKSFELGNKLEPERKIQLAKALGMQPRQIAIWFQNRRARWK 140
Cdd:pfam00046   1 RRKRttFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWK 56
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 87-140 8.15e-16

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 69.97  E-value: 8.15e-16
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 15232066     87 KKKRLQL--EQVKALEKSFELGNKLEPERKIQLAKALGMQPRQIAIWFQNRRARWK 140
Cdd:smart00389   2 RRKRTSFtpEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 87-143 7.42e-15

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 67.65  E-value: 7.42e-15
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 15232066  87 KKKRLQLEQVKALEKSFELGNKLEPERKIQLAKALGMQPRQIAIWFQNRRARWKTRQ 143
Cdd:cd00086   3 KRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRSE 59
HALZ pfam02183
Homeobox associated leucine zipper;
142-183 2.49e-13

Homeobox associated leucine zipper;


Pssm-ID: 460477 [Multi-domain]  Cd Length: 42  Bit Score: 62.92  E-value: 2.49e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 15232066   142 RQLERDYDSLKKQFESLKSDNASLLAYNKKLLAEVMALKNKE 183
Cdd:pfam02183   1 KQLERDYDVLKASYDALKSDFDSLKKENQKLQAELQELKEKL 42
COG5576 COG5576
Homeodomain-containing transcription factor [Transcription];
52-165 2.23e-09

Homeodomain-containing transcription factor [Transcription];


Pssm-ID: 227863 [Multi-domain]  Cd Length: 156  Bit Score: 55.14  E-value: 2.23e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232066  52 MMNRSMSLMNVqEDHNQTLDEENLSDDGAHTMlgEKKKRLQLEQVKALEKSFELGNKLEPERKIQLAKALGMQPRQIAIW 131
Cdd:COG5576  22 TIKTTKNKREV-EAADSEMKLERKQDGSSPPK--SKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIW 98

                        90       100       110
                ....*....|....*....|....*....|....*
gi 15232066 132 FQNRRARWKT-RQLERDYDSLKKQFESLKSDNASL 165
Cdd:COG5576  99 FQNKRAKEKKkRSGKVEQRPGEEEADLAKIGSLST 133
 
Name Accession Description Interval E-value
Homeodomain pfam00046
Homeodomain;
87-140 2.52e-16

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 71.38  E-value: 2.52e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 15232066    87 KKKR--LQLEQVKALEKSFELGNKLEPERKIQLAKALGMQPRQIAIWFQNRRARWK 140
Cdd:pfam00046   1 RRKRttFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWK 56
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 87-140 8.15e-16

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 69.97  E-value: 8.15e-16
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 15232066     87 KKKRLQL--EQVKALEKSFELGNKLEPERKIQLAKALGMQPRQIAIWFQNRRARWK 140
Cdd:smart00389   2 RRKRTSFtpEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 87-143 7.42e-15

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 67.65  E-value: 7.42e-15
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*..
gi 15232066  87 KKKRLQLEQVKALEKSFELGNKLEPERKIQLAKALGMQPRQIAIWFQNRRARWKTRQ 143
Cdd:cd00086   3 KRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRSE 59
HALZ pfam02183
Homeobox associated leucine zipper;
142-183 2.49e-13

Homeobox associated leucine zipper;


Pssm-ID: 460477 [Multi-domain]  Cd Length: 42  Bit Score: 62.92  E-value: 2.49e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 15232066   142 RQLERDYDSLKKQFESLKSDNASLLAYNKKLLAEVMALKNKE 183
Cdd:pfam02183   1 KQLERDYDVLKASYDALKSDFDSLKKENQKLQAELQELKEKL 42
COG5576 COG5576
Homeodomain-containing transcription factor [Transcription];
52-165 2.23e-09

Homeodomain-containing transcription factor [Transcription];


Pssm-ID: 227863 [Multi-domain]  Cd Length: 156  Bit Score: 55.14  E-value: 2.23e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15232066  52 MMNRSMSLMNVqEDHNQTLDEENLSDDGAHTMlgEKKKRLQLEQVKALEKSFELGNKLEPERKIQLAKALGMQPRQIAIW 131
Cdd:COG5576  22 TIKTTKNKREV-EAADSEMKLERKQDGSSPPK--SKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIW 98

                        90       100       110
                ....*....|....*....|....*....|....*
gi 15232066 132 FQNRRARWKT-RQLERDYDSLKKQFESLKSDNASL 165
Cdd:COG5576  99 FQNKRAKEKKkRSGKVEQRPGEEEADLAKIGSLST 133
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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