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Conserved domains on  [gi|30690809|ref|NP_182306|]
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Zinc finger C-x8-C-x5-C-x3-H type family protein [Arabidopsis thaliana]

Protein Classification

zinc finger CCCH domain-containing protein( domain architecture ID 10457906)

zinc finger CCCH domain-containing protein similar to Homo sapiens proline-rich protein 3 (PRR3)

CATH:  4.10.1000.10
Gene Ontology:  GO:0046872|GO:0003676
PubMed:  12665246|27990022
SCOP:  3001741

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
91-117 1.10e-08

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


:

Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 50.27  E-value: 1.10e-08
                          10        20
                  ....*....|....*....|....*..
gi 30690809    91 FGEPPCQFYLKTGTCKFGASCKFHHPK 117
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAHGQ 27
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
290-316 1.76e-07

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


:

Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 47.19  E-value: 1.76e-07
                          10        20
                  ....*....|....*....|....*..
gi 30690809   290 PGEPECQYYLKTGDCKFGTSCKFHHPR 316
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAHGQ 27
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
141-163 1.61e-06

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


:

Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 44.49  E-value: 1.61e-06
                          10        20
                  ....*....|....*....|...
gi 30690809   141 ECSYYLKTGQCKFGITCKFHHPQ 163
Cdd:pfam00642   5 LCRFFLRTGYCKYGDRCKFAHGQ 27
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
46-72 3.96e-06

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


:

Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 43.34  E-value: 3.96e-06
                          10        20
                  ....*....|....*....|....*..
gi 30690809    46 PGAPDCAYYMRTGVCGYGNRCRYNHPR 72
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAHGQ 27
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
336-362 2.04e-05

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


:

Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 41.02  E-value: 2.04e-05
                          10        20
                  ....*....|....*....|....*..
gi 30690809   336 PGVQRCTFYVQNGFCKFGSTCKFDHPM 362
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAHGQ 27
 
Name Accession Description Interval E-value
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
91-117 1.10e-08

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 50.27  E-value: 1.10e-08
                          10        20
                  ....*....|....*....|....*..
gi 30690809    91 FGEPPCQFYLKTGTCKFGASCKFHHPK 117
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAHGQ 27
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
290-316 1.76e-07

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 47.19  E-value: 1.76e-07
                          10        20
                  ....*....|....*....|....*..
gi 30690809   290 PGEPECQYYLKTGDCKFGTSCKFHHPR 316
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAHGQ 27
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
141-163 1.61e-06

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 44.49  E-value: 1.61e-06
                          10        20
                  ....*....|....*....|...
gi 30690809   141 ECSYYLKTGQCKFGITCKFHHPQ 163
Cdd:pfam00642   5 LCRFFLRTGYCKYGDRCKFAHGQ 27
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
46-72 3.96e-06

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 43.34  E-value: 3.96e-06
                          10        20
                  ....*....|....*....|....*..
gi 30690809    46 PGAPDCAYYMRTGVCGYGNRCRYNHPR 72
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAHGQ 27
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
336-362 2.04e-05

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 41.02  E-value: 2.04e-05
                          10        20
                  ....*....|....*....|....*..
gi 30690809   336 PGVQRCTFYVQNGFCKFGSTCKFDHPM 362
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAHGQ 27
ZnF_C3H1 smart00356
zinc finger;
90-117 2.64e-05

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 41.08  E-value: 2.64e-05
                           10        20
                   ....*....|....*....|....*...
gi 30690809     90 RFGEPPCQFYlKTGTCKFGASCKFHHPK 117
Cdd:smart00356   1 KYKTELCKFF-KRGYCPRGDRCKFAHPL 27
ZnF_C3H1 smart00356
zinc finger;
289-316 1.37e-03

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 36.07  E-value: 1.37e-03
                           10        20
                   ....*....|....*....|....*...
gi 30690809    289 RPGEPECQYYlKTGDCKFGTSCKFHHPR 316
Cdd:smart00356   1 KYKTELCKFF-KRGYCPRGDRCKFAHPL 27
ZnF_C3H1 smart00356
zinc finger;
335-362 4.09e-03

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 34.53  E-value: 4.09e-03
                           10        20
                   ....*....|....*....|....*...
gi 30690809    335 RPGVQRCTFYvQNGFCKFGSTCKFDHPM 362
Cdd:smart00356   1 KYKTELCKFF-KRGYCPRGDRCKFAHPL 27
 
Name Accession Description Interval E-value
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
91-117 1.10e-08

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 50.27  E-value: 1.10e-08
                          10        20
                  ....*....|....*....|....*..
gi 30690809    91 FGEPPCQFYLKTGTCKFGASCKFHHPK 117
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAHGQ 27
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
290-316 1.76e-07

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 47.19  E-value: 1.76e-07
                          10        20
                  ....*....|....*....|....*..
gi 30690809   290 PGEPECQYYLKTGDCKFGTSCKFHHPR 316
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAHGQ 27
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
141-163 1.61e-06

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 44.49  E-value: 1.61e-06
                          10        20
                  ....*....|....*....|...
gi 30690809   141 ECSYYLKTGQCKFGITCKFHHPQ 163
Cdd:pfam00642   5 LCRFFLRTGYCKYGDRCKFAHGQ 27
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
46-72 3.96e-06

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 43.34  E-value: 3.96e-06
                          10        20
                  ....*....|....*....|....*..
gi 30690809    46 PGAPDCAYYMRTGVCGYGNRCRYNHPR 72
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAHGQ 27
zf-CCCH pfam00642
Zinc finger C-x8-C-x5-C-x3-H type (and similar);
336-362 2.04e-05

Zinc finger C-x8-C-x5-C-x3-H type (and similar);


Pssm-ID: 459885 [Multi-domain]  Cd Length: 27  Bit Score: 41.02  E-value: 2.04e-05
                          10        20
                  ....*....|....*....|....*..
gi 30690809   336 PGVQRCTFYVQNGFCKFGSTCKFDHPM 362
Cdd:pfam00642   1 YKTELCRFFLRTGYCKYGDRCKFAHGQ 27
ZnF_C3H1 smart00356
zinc finger;
90-117 2.64e-05

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 41.08  E-value: 2.64e-05
                           10        20
                   ....*....|....*....|....*...
gi 30690809     90 RFGEPPCQFYlKTGTCKFGASCKFHHPK 117
Cdd:smart00356   1 KYKTELCKFF-KRGYCPRGDRCKFAHPL 27
ZnF_C3H1 smart00356
zinc finger;
289-316 1.37e-03

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 36.07  E-value: 1.37e-03
                           10        20
                   ....*....|....*....|....*...
gi 30690809    289 RPGEPECQYYlKTGDCKFGTSCKFHHPR 316
Cdd:smart00356   1 KYKTELCKFF-KRGYCPRGDRCKFAHPL 27
ZnF_C3H1 smart00356
zinc finger;
335-362 4.09e-03

zinc finger;


Pssm-ID: 214632 [Multi-domain]  Cd Length: 27  Bit Score: 34.53  E-value: 4.09e-03
                           10        20
                   ....*....|....*....|....*...
gi 30690809    335 RPGVQRCTFYvQNGFCKFGSTCKFDHPM 362
Cdd:smart00356   1 KYKTELCKFF-KRGYCPRGDRCKFAHPL 27
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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