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Conserved domains on  [gi|15227131|ref|NP_182299|]
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Rubber elongation factor protein (REF) [Arabidopsis thaliana]

Protein Classification

REF domain-containing protein( domain architecture ID 10530445)

REF domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
REF pfam05755
Rubber elongation factor protein (REF); This family consists of the highly related rubber ...
35-229 8.41e-104

Rubber elongation factor protein (REF); This family consists of the highly related rubber elongation factor (REF), small rubber particle protein (SRPP) and stress-related protein (SRP) sequences. REF and SRPP are released from the rubber particle membrane into the cytosol during osmotic lysis of the sedimentable organelles (lutoids). The exact function of this family is unknown.


:

Pssm-ID: 461731  Cd Length: 206  Bit Score: 298.81  E-value: 8.41e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227131    35 DDDEMKLKHLEFIQVAAVYFAACFSTLYELAKDNAGPLKLGVENIEDCVRTVLAPLYEKFHDVPFKLLLFVDRKVDDVFF 114
Cdd:pfam05755   1 EEEEEKLKYLGFVQVAAIQALVCVSNLYEYAKENSGPLKPGVDTVEGTVKTVVGPVYEKFHGVPFELLKFVDRKVDESVT 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227131   115 DVETYVPSLVKQASSQAL-----------TVATEVQRTGVVDTTKSIARSVRDKYEPAAEYYAATLWRLLNQLPLFPEVA 183
Cdd:pfam05755  81 KLDRHVPPVVKQVSSQAYsvaqkapeaarSVASEVQRAGVVAAAEPVAKELYTKYEPVAEQYAVSAWRKLNRLPLFPQVA 160
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 15227131   184 HLVIPTAFYWSEKYNDAVRYVGDRDYFGAEYLPMIPIEKISDILEQ 229
Cdd:pfam05755 161 QVAVPTAAYWSEKYNHLVSDAAEKGYAVAGYLPLVPIEKIAKAFKQ 206
 
Name Accession Description Interval E-value
REF pfam05755
Rubber elongation factor protein (REF); This family consists of the highly related rubber ...
35-229 8.41e-104

Rubber elongation factor protein (REF); This family consists of the highly related rubber elongation factor (REF), small rubber particle protein (SRPP) and stress-related protein (SRP) sequences. REF and SRPP are released from the rubber particle membrane into the cytosol during osmotic lysis of the sedimentable organelles (lutoids). The exact function of this family is unknown.


Pssm-ID: 461731  Cd Length: 206  Bit Score: 298.81  E-value: 8.41e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227131    35 DDDEMKLKHLEFIQVAAVYFAACFSTLYELAKDNAGPLKLGVENIEDCVRTVLAPLYEKFHDVPFKLLLFVDRKVDDVFF 114
Cdd:pfam05755   1 EEEEEKLKYLGFVQVAAIQALVCVSNLYEYAKENSGPLKPGVDTVEGTVKTVVGPVYEKFHGVPFELLKFVDRKVDESVT 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227131   115 DVETYVPSLVKQASSQAL-----------TVATEVQRTGVVDTTKSIARSVRDKYEPAAEYYAATLWRLLNQLPLFPEVA 183
Cdd:pfam05755  81 KLDRHVPPVVKQVSSQAYsvaqkapeaarSVASEVQRAGVVAAAEPVAKELYTKYEPVAEQYAVSAWRKLNRLPLFPQVA 160
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 15227131   184 HLVIPTAFYWSEKYNDAVRYVGDRDYFGAEYLPMIPIEKISDILEQ 229
Cdd:pfam05755 161 QVAVPTAAYWSEKYNHLVSDAAEKGYAVAGYLPLVPIEKIAKAFKQ 206
 
Name Accession Description Interval E-value
REF pfam05755
Rubber elongation factor protein (REF); This family consists of the highly related rubber ...
35-229 8.41e-104

Rubber elongation factor protein (REF); This family consists of the highly related rubber elongation factor (REF), small rubber particle protein (SRPP) and stress-related protein (SRP) sequences. REF and SRPP are released from the rubber particle membrane into the cytosol during osmotic lysis of the sedimentable organelles (lutoids). The exact function of this family is unknown.


Pssm-ID: 461731  Cd Length: 206  Bit Score: 298.81  E-value: 8.41e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227131    35 DDDEMKLKHLEFIQVAAVYFAACFSTLYELAKDNAGPLKLGVENIEDCVRTVLAPLYEKFHDVPFKLLLFVDRKVDDVFF 114
Cdd:pfam05755   1 EEEEEKLKYLGFVQVAAIQALVCVSNLYEYAKENSGPLKPGVDTVEGTVKTVVGPVYEKFHGVPFELLKFVDRKVDESVT 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15227131   115 DVETYVPSLVKQASSQAL-----------TVATEVQRTGVVDTTKSIARSVRDKYEPAAEYYAATLWRLLNQLPLFPEVA 183
Cdd:pfam05755  81 KLDRHVPPVVKQVSSQAYsvaqkapeaarSVASEVQRAGVVAAAEPVAKELYTKYEPVAEQYAVSAWRKLNRLPLFPQVA 160
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 15227131   184 HLVIPTAFYWSEKYNDAVRYVGDRDYFGAEYLPMIPIEKISDILEQ 229
Cdd:pfam05755 161 QVAVPTAAYWSEKYNHLVSDAAEKGYAVAGYLPLVPIEKIAKAFKQ 206
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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