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Conserved domains on  [gi|15224451|ref|NP_181349|]
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plastid-specific ribosomal protein 4 [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RPS31 super family cl27771
Ribosomal protein S31e; RPS31, Ubi3 precursor, which is part of mature 60S and 40S ribosomal ...
 1-99 3.62e-60

Ribosomal protein S31e; RPS31, Ubi3 precursor, which is part of mature 60S and 40S ribosomal subunits. It seems that linear ubiquitin fusion to Rps31 and its subsequent cleavage are required for the efficient production and functional integrity of 40S ribosomal subunits.


The actual alignment was detected with superfamily member pfam17067:

Pssm-ID: 332592  Cd Length: 99  Bit Score: 179.68  E-value: 3.62e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15224451     1 MASLILGAPPRVTVALPSSRLSSSHSETAGVSLSCFTHQFSLSTSSSSSIPLVYCGRGDRKTAKGKRFNHSFGNARPRNK 80
Cdd:pfam17067   1 MASLILGAPPRVTVALPSSRLSSSHSETAGVSLSCFTHQFSLSTSSSSSIPLVYCGRGDRKTAKGKRFNHSFGNARPRNK 80

                          90
                  ....*....|....*....
gi 15224451    81 SKGRGPERVPVPPAPPRKD 99
Cdd:pfam17067  81 SKGRGPERVPVPPAPPRKD 99
 
Name Accession Description Interval E-value
RPS31 pfam17067
Ribosomal protein S31e; RPS31, Ubi3 precursor, which is part of mature 60S and 40S ribosomal ...
 1-99 3.62e-60

Ribosomal protein S31e; RPS31, Ubi3 precursor, which is part of mature 60S and 40S ribosomal subunits. It seems that linear ubiquitin fusion to Rps31 and its subsequent cleavage are required for the efficient production and functional integrity of 40S ribosomal subunits.


Pssm-ID: 293672  Cd Length: 99  Bit Score: 179.68  E-value: 3.62e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15224451     1 MASLILGAPPRVTVALPSSRLSSSHSETAGVSLSCFTHQFSLSTSSSSSIPLVYCGRGDRKTAKGKRFNHSFGNARPRNK 80
Cdd:pfam17067   1 MASLILGAPPRVTVALPSSRLSSSHSETAGVSLSCFTHQFSLSTSSSSSIPLVYCGRGDRKTAKGKRFNHSFGNARPRNK 80

                          90
                  ....*....|....*....
gi 15224451    81 SKGRGPERVPVPPAPPRKD 99
Cdd:pfam17067  81 SKGRGPERVPVPPAPPRKD 99
 
Name Accession Description Interval E-value
RPS31 pfam17067
Ribosomal protein S31e; RPS31, Ubi3 precursor, which is part of mature 60S and 40S ribosomal ...
 1-99 3.62e-60

Ribosomal protein S31e; RPS31, Ubi3 precursor, which is part of mature 60S and 40S ribosomal subunits. It seems that linear ubiquitin fusion to Rps31 and its subsequent cleavage are required for the efficient production and functional integrity of 40S ribosomal subunits.


Pssm-ID: 293672  Cd Length: 99  Bit Score: 179.68  E-value: 3.62e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15224451     1 MASLILGAPPRVTVALPSSRLSSSHSETAGVSLSCFTHQFSLSTSSSSSIPLVYCGRGDRKTAKGKRFNHSFGNARPRNK 80
Cdd:pfam17067   1 MASLILGAPPRVTVALPSSRLSSSHSETAGVSLSCFTHQFSLSTSSSSSIPLVYCGRGDRKTAKGKRFNHSFGNARPRNK 80

                          90
                  ....*....|....*....
gi 15224451    81 SKGRGPERVPVPPAPPRKD 99
Cdd:pfam17067  81 SKGRGPERVPVPPAPPRKD 99
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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