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Conserved domains on  [gi|15225790|ref|NP_180247|]
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Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

Protein Classification

pentatricopeptide repeat-containing protein( domain architecture ID 13325948)

pentatricopeptide repeat (PPR)-containing protein may form anti-parallel alpha helices and bind single-stranded RNA in a sequence-specific and modular manner

CATH:  1.25.40.10
Gene Ontology:  GO:0003723
PubMed:  19004664|23635770|25882680|34065603|18031283|30809817
SCOP:  4001344

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03218 super family cl33664
maturation of RBCL 1; Provisional
 387-668 3.02e-24

maturation of RBCL 1; Provisional


The actual alignment was detected with superfamily member PLN03218:

Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 109.20  E-value: 3.02e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790   387 DRVCYNVAFDALSKLGRVEEAFELLQEMKDRGIVPDVINYTTLIDGYCLQGKVVDALDLIDEMIGNGMSPDLITYNVLVS 466
Cdd:PLN03218  471 DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIS 550

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790   467 GLARNGHEEEVLEIYERMKAEG-P-KPNAVTNSVIIEGLCFARKVKEAEDFFSSLEQkcpenkaSFVKGYCEA------G 538
Cdd:PLN03218  551 ACGQSGAVDRAFDVLAEMKAEThPiDPDHITVGALMKACANAGQVDRAKEVYQMIHE-------YNIKGTPEVytiavnS 623

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790   539 LSKKAYKAFVRLEYP--LRKSVYI-KLFFSLCIE-----GYLEKAHDVLKKMSAYRVEPGRSMCGKMIGAFCKLNNVREA 610
Cdd:PLN03218  624 CSQKGDWDFALSIYDdmKKKGVKPdEVFFSALVDvaghaGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKA 703

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 15225790   611 QVLFDTMVERGLIPDLFTYTIMIHTYCRLNELQKAESLFEDMKQRGIKPDVVTYTVLL 668
Cdd:PLN03218  704 LELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761
PLN03081 super family cl33631
pentatricopeptide (PPR) repeat-containing protein; Provisional
 153-521 2.17e-20

pentatricopeptide (PPR) repeat-containing protein; Provisional


The actual alignment was detected with superfamily member PLN03081:

Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 96.48  E-value: 2.17e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790  153 VKAYVSLGMFDEATDvLFQSKRLDCVVDIKACNF--LMNRMTEFGKIGMLMTLFKQLKQLGLCANEYTYAIVVKALCRKG 230
Cdd:PLN03081  94 IEKLVACGRHREALE-LFEILEAGCPFTLPASTYdaLVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCG 172

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790  231 NLEEAAMLL--IENESVFGYKTFINGLCVTGETEKAVALILELIDRkylAGDDLRAVLGMVVRGFCNEMKMKAAESVIIE 308
Cdd:PLN03081 173 MLIDARRLFdeMPERNLASWGTIIGGLVDAGNYREAFALFREMWED---GSDAEPRTFVVMLRASAGLGSARAGQQLHCC 249

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790  309 MEEIGFGLDVYACLAVIDRYCKNMNLPEALGFLDKMLGKG-LKVNCVIVSLILQCYCKmdmclEALEKFKEFRDMNIFLD 387
Cdd:PLN03081 250 VLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTtVAWNSMLAGYALHGYSE-----EALCLYYEMRDSGVSID 324

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790  388 RVCYNVAFDALSKLGRVEEAFELLQEMKDRGIVPDVINYTTLIDGYCLQGKVVDALDLIDEMigngmsP--DLITYNVLV 465
Cdd:PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM------PrkNLISWNALI 398

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 15225790  466 SGLARNGHEEEVLEIYERMKAEGPKPNAVTNSVIIEGLCFARKVKEAEDFFSSLEQ 521
Cdd:PLN03081 399 AGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE 454
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 708-756 3.19e-10

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


:

Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 55.83  E-value: 3.19e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 15225790   708 DVVCYTVLIDRQCKMNNLEQAAELFDRMIDSGLEPDMVAYTTLISSYFR 756
Cdd:pfam13041   2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 super family cl38385
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 742-776 6.44e-03

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


The actual alignment was detected with superfamily member pfam13041:

Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 35.42  E-value: 6.44e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 15225790   742 PDMVAYTTLISSYFRKGYIDMAVTLVTELSKK--------YNI 776
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRgvkpnvytYTI 43
 
Name Accession Description Interval E-value
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 387-668 3.02e-24

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 109.20  E-value: 3.02e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790   387 DRVCYNVAFDALSKLGRVEEAFELLQEMKDRGIVPDVINYTTLIDGYCLQGKVVDALDLIDEMIGNGMSPDLITYNVLVS 466
Cdd:PLN03218  471 DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIS 550

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790   467 GLARNGHEEEVLEIYERMKAEG-P-KPNAVTNSVIIEGLCFARKVKEAEDFFSSLEQkcpenkaSFVKGYCEA------G 538
Cdd:PLN03218  551 ACGQSGAVDRAFDVLAEMKAEThPiDPDHITVGALMKACANAGQVDRAKEVYQMIHE-------YNIKGTPEVytiavnS 623

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790   539 LSKKAYKAFVRLEYP--LRKSVYI-KLFFSLCIE-----GYLEKAHDVLKKMSAYRVEPGRSMCGKMIGAFCKLNNVREA 610
Cdd:PLN03218  624 CSQKGDWDFALSIYDdmKKKGVKPdEVFFSALVDvaghaGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKA 703

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 15225790   611 QVLFDTMVERGLIPDLFTYTIMIHTYCRLNELQKAESLFEDMKQRGIKPDVVTYTVLL 668
Cdd:PLN03218  704 LELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 153-521 2.17e-20

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 96.48  E-value: 2.17e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790  153 VKAYVSLGMFDEATDvLFQSKRLDCVVDIKACNF--LMNRMTEFGKIGMLMTLFKQLKQLGLCANEYTYAIVVKALCRKG 230
Cdd:PLN03081  94 IEKLVACGRHREALE-LFEILEAGCPFTLPASTYdaLVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCG 172

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790  231 NLEEAAMLL--IENESVFGYKTFINGLCVTGETEKAVALILELIDRkylAGDDLRAVLGMVVRGFCNEMKMKAAESVIIE 308
Cdd:PLN03081 173 MLIDARRLFdeMPERNLASWGTIIGGLVDAGNYREAFALFREMWED---GSDAEPRTFVVMLRASAGLGSARAGQQLHCC 249

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790  309 MEEIGFGLDVYACLAVIDRYCKNMNLPEALGFLDKMLGKG-LKVNCVIVSLILQCYCKmdmclEALEKFKEFRDMNIFLD 387
Cdd:PLN03081 250 VLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTtVAWNSMLAGYALHGYSE-----EALCLYYEMRDSGVSID 324

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790  388 RVCYNVAFDALSKLGRVEEAFELLQEMKDRGIVPDVINYTTLIDGYCLQGKVVDALDLIDEMigngmsP--DLITYNVLV 465
Cdd:PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM------PrkNLISWNALI 398

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 15225790  466 SGLARNGHEEEVLEIYERMKAEGPKPNAVTNSVIIEGLCFARKVKEAEDFFSSLEQ 521
Cdd:PLN03081 399 AGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE 454
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 624-669 6.48e-16

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 72.01  E-value: 6.48e-16
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 15225790   624 PDLFTYTIMIHTYCRLNELQKAESLFEDMKQRGIKPDVVTYTVLLD 669
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILIN 46
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 708-756 3.19e-10

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 55.83  E-value: 3.19e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 15225790   708 DVVCYTVLIDRQCKMNNLEQAAELFDRMIDSGLEPDMVAYTTLISSYFR 756
Cdd:pfam13041   2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 627-661 2.05e-08

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 50.53  E-value: 2.05e-08
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 15225790   627 FTYTIMIHTYCRLNELQKAESLFEDMKQRGIKPDV 661
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 710-743 5.87e-05

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 40.52  E-value: 5.87e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 15225790   710 VCYTVLIDRQCKMNNLEQAAELFDRMIDSGLEPD 743
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 180-228 1.14e-04

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 40.42  E-value: 1.14e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 15225790   180 DIKACNFLMNRMTEFGKIGMLMTLFKQLKQLGLCANEYTYAIVVKALCR 228
Cdd:pfam13041   2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 742-776 6.44e-03

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 35.42  E-value: 6.44e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 15225790   742 PDMVAYTTLISSYFRKGYIDMAVTLVTELSKK--------YNI 776
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRgvkpnvytYTI 43
 
Name Accession Description Interval E-value
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 387-668 3.02e-24

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 109.20  E-value: 3.02e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790   387 DRVCYNVAFDALSKLGRVEEAFELLQEMKDRGIVPDVINYTTLIDGYCLQGKVVDALDLIDEMIGNGMSPDLITYNVLVS 466
Cdd:PLN03218  471 DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIS 550

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790   467 GLARNGHEEEVLEIYERMKAEG-P-KPNAVTNSVIIEGLCFARKVKEAEDFFSSLEQkcpenkaSFVKGYCEA------G 538
Cdd:PLN03218  551 ACGQSGAVDRAFDVLAEMKAEThPiDPDHITVGALMKACANAGQVDRAKEVYQMIHE-------YNIKGTPEVytiavnS 623

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790   539 LSKKAYKAFVRLEYP--LRKSVYI-KLFFSLCIE-----GYLEKAHDVLKKMSAYRVEPGRSMCGKMIGAFCKLNNVREA 610
Cdd:PLN03218  624 CSQKGDWDFALSIYDdmKKKGVKPdEVFFSALVDvaghaGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKA 703

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 15225790   611 QVLFDTMVERGLIPDLFTYTIMIHTYCRLNELQKAESLFEDMKQRGIKPDVVTYTVLL 668
Cdd:PLN03218  704 LELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 404-772 1.53e-20

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 97.25  E-value: 1.53e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790   404 VEEAFELLQEMKDRGIVPDVINYTTLIDGYCLQGKvVDAL-DLIDEMIGNGMSPDLITYNVLVSGLARNGHEEEVLEIYE 482
Cdd:PLN03218  453 IDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGK-VDAMfEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYG 531

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790   483 RMKAEGPKPNAVTnsviieglcfarkvkeaedfFSSLEQKCPENkasfvkgyceaglskkaykafvrleyplrksvyikl 562
Cdd:PLN03218  532 IMRSKNVKPDRVV--------------------FNALISACGQS------------------------------------ 555

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790   563 ffslcieGYLEKAHDVLKKMSA--YRVEPGRSMCGKMIGAFCKLNNVREAQVLFDTMVERGLIPDLFTYTIMIHTYCRLN 640
Cdd:PLN03218  556 -------GAVDRAFDVLAEMKAetHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKG 628

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790   641 ELQKAESLFEDMKQRGIKPDVVTYTVLLDrylkldpehhetcsVQGEVGK-RKASEVLREFSAAGIGLDVVCY------- 712
Cdd:PLN03218  629 DWDFALSIYDDMKKKGVKPDEVFFSALVD--------------VAGHAGDlDKAFEILQDARKQGIKLGTVSYsslmgac 694

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790   713 -----------------------TV-----LIDRQCKMNNLEQAAELFDRMIDSGLEPDMVAYTTLISSYFRKGYIDMAV 764
Cdd:PLN03218  695 snaknwkkalelyediksiklrpTVstmnaLITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGL 774


                  ....*...
gi 15225790   765 TLVTELSK 772
Cdd:PLN03218  775 DLLSQAKE 782
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 153-521 2.17e-20

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 96.48  E-value: 2.17e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790  153 VKAYVSLGMFDEATDvLFQSKRLDCVVDIKACNF--LMNRMTEFGKIGMLMTLFKQLKQLGLCANEYTYAIVVKALCRKG 230
Cdd:PLN03081  94 IEKLVACGRHREALE-LFEILEAGCPFTLPASTYdaLVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCG 172

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790  231 NLEEAAMLL--IENESVFGYKTFINGLCVTGETEKAVALILELIDRkylAGDDLRAVLGMVVRGFCNEMKMKAAESVIIE 308
Cdd:PLN03081 173 MLIDARRLFdeMPERNLASWGTIIGGLVDAGNYREAFALFREMWED---GSDAEPRTFVVMLRASAGLGSARAGQQLHCC 249

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790  309 MEEIGFGLDVYACLAVIDRYCKNMNLPEALGFLDKMLGKG-LKVNCVIVSLILQCYCKmdmclEALEKFKEFRDMNIFLD 387
Cdd:PLN03081 250 VLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTtVAWNSMLAGYALHGYSE-----EALCLYYEMRDSGVSID 324

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790  388 RVCYNVAFDALSKLGRVEEAFELLQEMKDRGIVPDVINYTTLIDGYCLQGKVVDALDLIDEMigngmsP--DLITYNVLV 465
Cdd:PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM------PrkNLISWNALI 398

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 15225790  466 SGLARNGHEEEVLEIYERMKAEGPKPNAVTNSVIIEGLCFARKVKEAEDFFSSLEQ 521
Cdd:PLN03081 399 AGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE 454
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 337-664 4.74e-18

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 89.17  E-value: 4.74e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790   337 ALGFLDKMLGKGLKVNCVI-------------VSLILQCYCKM----------------DMCLEALEKFKEF------RD 381
Cdd:PLN03218  456 ALRVLRLVQEAGLKADCKLyttlistcaksgkVDAMFEVFHEMvnagveanvhtfgaliDGCARAGQVAKAFgaygimRS 535

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790   382 MNIFLDRVCYNVAFDALSKLGRVEEAFELLQEMKDRG--IVPDVINYTTLIDGYCLQGKVVDALDLIDEMIGNGMSPDLI 459
Cdd:PLN03218  536 KNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAEThpIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPE 615

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790   460 TYNVLVSGLARNGHEEEVLEIYERMKAEGPKPNAVtnsviieglcfarkvkeaedFFSSLEQKcpenkasfvkgyceAGL 539
Cdd:PLN03218  616 VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEV--------------------FFSALVDV--------------AGH 661

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790   540 SKKAYKAFVRLE------YPLRKSVYIKLFFSLCIEGYLEKAHDVLKKMSAYRVEPGRSMCGKMIGAFCKLNNVREAQVL 613
Cdd:PLN03218  662 AGDLDKAFEILQdarkqgIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEV 741

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|.
gi 15225790   614 FDTMVERGLIPDLFTYTIMIHTYCRLNELQKAESLFEDMKQRGIKPDVVTY 664
Cdd:PLN03218  742 LSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMC 792
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 624-669 6.48e-16

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 72.01  E-value: 6.48e-16
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 15225790   624 PDLFTYTIMIHTYCRLNELQKAESLFEDMKQRGIKPDVVTYTVLLD 669
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILIN 46
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 421-470 1.26e-13

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 65.46  E-value: 1.26e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 15225790   421 PDVINYTTLIDGYCLQGKVVDALDLIDEMIGNGMSPDLITYNVLVSGLAR 470
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PLN03077 PLN03077
Protein ECB2; Provisional
 313-776 2.30e-13

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 74.12  E-value: 2.30e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790  313 GFGLDVYACLAVIDRYCKNMNLPEALGFLDKMLgkglKVNCVIVSLILQCYCKMDMCLEALEKFKEFRDMNIFLDRVCYN 392
Cdd:PLN03077 217 GFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTIT 292

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790  393 VAFDALSKLGRVEEAFELLQEMKDRGIVPDVINYTTLIDGYCLQGKVVDAldlidEMIGNGM-SPDLITYNVLVSGLARN 471
Cdd:PLN03077 293 SVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEA-----EKVFSRMeTKDAVSWTAMISGYEKN 367

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790  472 GHEEEVLEIYERMKAEGPKPNAVT-NSVIIEGLCFARKVKEAEdfFSSLEQKcpenkasfvkgyceAGLSKKAYKAFVRL 550
Cdd:PLN03077 368 GLPDKALETYALMEQDNVSPDEITiASVLSACACLGDLDVGVK--LHELAER--------------KGLISYVVVANALI 431

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790  551 EyplrksVYIKlffSLCIEgyleKAHDVLKKMSAYRVEPGRSMcgkmIGAFCKLNNVREAQVLFDTMVERgLIPDLFTYT 630
Cdd:PLN03077 432 E------MYSK---CKCID----KALEVFHNIPEKDVISWTSI----IAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLI 493

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790  631 IMIHTYCRLNELQKAESLFEDMKQRGIKPDVVTYTVLLDRYLKldpehhetCSvqgevgkrKASEVLREFSAAGigLDVV 710
Cdd:PLN03077 494 AALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVR--------CG--------RMNYAWNQFNSHE--KDVV 555

                        410       420       430       440       450       460
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15225790  711 CYTVLIDRQCKMNNLEQAAELFDRMIDSGLEPDMVAYTTLISSYFRKGYIDMAVTLVTELSKKYNI 776
Cdd:PLN03077 556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSI 621
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 389-434 2.31e-13

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 65.08  E-value: 2.31e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 15225790   389 VCYNVAFDALSKLGRVEEAFELLQEMKDRGIVPDVINYTTLIDGYC 434
Cdd:pfam13041   4 VTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLC 49
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 195-507 6.17e-13

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 72.60  E-value: 6.17e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790   195 GKIGMLMTLFKQLKQLGLCANEYTYAIVVKALCRKGNLEEA--AMLLIENESV----FGYKTFINGLCVTGETEKAVALI 268
Cdd:PLN03218  486 GKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAfgAYGIMRSKNVkpdrVVFNALISACGQSGAVDRAFDVL 565

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790   269 LEL------IDRKYLAgddlravLGMVVRGFCNEMKMKAAESVIIEMEEIGF--GLDVYAclAVIDRYCKNMNLPEALGF 340
Cdd:PLN03218  566 AEMkaethpIDPDHIT-------VGALMKACANAGQVDRAKEVYQMIHEYNIkgTPEVYT--IAVNSCSQKGDWDFALSI 636

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790   341 LDKMLGKGLKVNCVIVSLILQCYCKMDMCLEALEKFKEFRDMNIFLDRVCYNVAFDALSKLGRVEEAFELLQEMKDRGIV 420
Cdd:PLN03218  637 YDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLR 716

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790   421 PDVINYTTLIDGYCLQGKVVDALDLIDEMIGNGMSPDLITYNVLVSGLARNGHEEEVLEIYERMKAEGPKPNAVTNSVII 500
Cdd:PLN03218  717 PTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT 796


                  ....*..
gi 15225790   501 eGLCFAR 507
Cdd:PLN03218  797 -GLCLRR 802
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 597-638 3.08e-11

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 58.91  E-value: 3.08e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 15225790   597 MIGAFCKLNNVREAQVLFDTMVERGLIPDLFTYTIMIHTYCR 638
Cdd:pfam13041   9 LINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 371-798 4.78e-11

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 66.43  E-value: 4.78e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790  371 EALEKFKEFRDMNIF-LDRVCYNVAFDALSKLGRVEEAFELLQEMKDRGIVPDVINYTTLIDGYCLQGKVVDALDLIDEM 449
Cdd:PLN03081 105 EALELFEILEAGCPFtLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM 184

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790  450 igngmsPD--LITYNVLVSGLARNGHEEEVLEIYERMKAEGPKPNAVTNSVIIE---GL----------CFARKVKEAED 514
Cdd:PLN03081 185 ------PErnLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRasaGLgsaragqqlhCCVLKTGVVGD 258

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790  515 FFSSleqkCpenkaSFVKGYCEAGLSKKAYKAFVRLEyplRKSV--YIKLFFSLCIEGYLEKAHDVLKKMSAYRVEPGRS 592
Cdd:PLN03081 259 TFVS----C-----ALIDMYSKCGDIEDARCVFDGMP---EKTTvaWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQF 326

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790  593 MCGKMIGAFCKLNNVREAQVLFDTMVERGLIPDLFTYTIMIHTYCRLNELQKAESLFEDMKQRgikpDVVTYTVLLDRYl 672
Cdd:PLN03081 327 TFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK----NLISWNALIAGY- 401

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790  673 kldpehhetcsvqGEVGK-RKASEVLREFSAAGIGLDVVCYTVLIDrQCKMNNL-EQAAELFDRMI-DSGLEPDMVAYTT 749
Cdd:PLN03081 402 -------------GNHGRgTKAVEMFERMIAEGVAPNHVTFLAVLS-ACRYSGLsEQGWEIFQSMSeNHRIKPRAMHYAC 467

                        410       420       430       440
                 ....*....|....*....|....*....|....*....|....*....
gi 15225790  750 LISSYFRKGYIDMAVTLVTELSKKyniPSESFEAAVKSAALKAKRFQYG 798
Cdd:PLN03081 468 MIELLGREGLLDEAYAMIRRAPFK---PTVNMWAALLTACRIHKNLELG 513
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 456-504 2.45e-10

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 56.22  E-value: 2.45e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 15225790   456 PDLITYNVLVSGLARNGHEEEVLEIYERMKAEGPKPNAVTNSVIIEGLC 504
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLC 49
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 708-756 3.19e-10

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 55.83  E-value: 3.19e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 15225790   708 DVVCYTVLIDRQCKMNNLEQAAELFDRMIDSGLEPDMVAYTTLISSYFR 756
Cdd:pfam13041   2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 417-449 9.49e-10

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 54.27  E-value: 9.49e-10
                          10        20        30
                  ....*....|....*....|....*....|...
gi 15225790   417 RGIVPDVINYTTLIDGYCLQGKVVDALDLIDEM 449
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEM 33
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 410-466 1.30e-09

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 54.67  E-value: 1.30e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 15225790   410 LLQEMKDRGIVPDVINYTTLIDGYCLQGKVVDALDLIDEMIGNGMSPDLITYNVLVS 466
Cdd:pfam13812   2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILG 58
PLN03077 PLN03077
Protein ECB2; Provisional
 529-758 3.69e-09

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 60.25  E-value: 3.69e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790  529 SFVKGYCEAGLSKKAYK---AFVRLEYPLRKSVYIKLFfSLC------IEGylEKAHD-VLKKMSAYRVEPGRSMcgkmI 598
Cdd:PLN03077  56 SQLRALCSHGQLEQALKlleSMQELRVPVDEDAYVALF-RLCewkravEEG--SRVCSrALSSHPSLGVRLGNAM----L 128

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790  599 GAFCKLNNVREAQVLFDTMVERglipDLFTYTIMIHTYCRLNELQKAESLFEDMKQRGIKPDVVTYTVLLdrylkldpeh 678
Cdd:PLN03077 129 SMFVRFGELVHAWYVFGKMPER----DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVL---------- 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790  679 hETCSvqGEVGKRKASEVLREFSAAGIGLDVVCYTVLIDRQCKMNNLEQAAELFDRMIDSglepDMVAYTTLISSYFRKG 758
Cdd:PLN03077 195 -RTCG--GIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRR----DCISWNAMISGYFENG 267
PLN03077 PLN03077
Protein ECB2; Provisional
 392-788 5.33e-09

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 59.86  E-value: 5.33e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790  392 NVAFDALSKLGRVEEAFELLQEMKDRGIVPDVINYTTLI----------DGYCLQGKVVDALDLIDEMIGNGM------- 454
Cdd:PLN03077  55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFrlcewkraveEGSRVCSRALSSHPSLGVRLGNAMlsmfvrf 134

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790  455 --------------SPDLITYNVLVSGLARNGHEEEVLEIYERMKAEGPKPNAVTnsviieglcfarkvkeaedfFSSLE 520
Cdd:PLN03077 135 gelvhawyvfgkmpERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYT--------------------FPCVL 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790  521 QKCpenkasfvKGYCEAGLSKKAYKAFVRLEYplrksvyiklffslciegylEKAHDVLKKMsayrvepgrsmcgkmIGA 600
Cdd:PLN03077 195 RTC--------GGIPDLARGREVHAHVVRFGF--------------------ELDVDVVNAL---------------ITM 231

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790  601 FCKLNNVREAQVLFDTMVERglipDLFTYTIMIHTYCRLNELQKAESLFEDMKQRGIKPDVVTYTVLLdrylkldpehhE 680
Cdd:PLN03077 232 YVKCGDVVSARLVFDRMPRR----DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVI-----------S 296

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790  681 TCSVQGEVgkRKASEVLREFSAAGIGLDVVCYTVLIDRQCKMNNLEQAAELFDRMIDSglepDMVAYTTLISSYFRKGYI 760
Cdd:PLN03077 297 ACELLGDE--RLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLP 370

                        410       420
                 ....*....|....*....|....*...
gi 15225790  761 DMAVTLVTELSKKYNIPSESFEAAVKSA 788
Cdd:PLN03077 371 DKALETYALMEQDNVSPDEITIASVLSA 398
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 434-794 8.68e-09

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 59.12  E-value: 8.68e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790   434 CLQGKVVDALDLIDEMIGNGMSPDLITYNVLVSGLARNGHEEEVLEIYE---RMKAEGPKPNAVTNSVIIEGlcfarKVK 510
Cdd:PLN03218  313 GLRKGVSSATNSLSLDKKNNGVKDAELPGQSSGQAASDVEEENSLAAYNggvSGKRKSPEYIDAYNRLLRDG-----RIK 387

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790   511 EAEDFFSSLEQK-----CPENKASFVKGyCEAGLSKKAYKAFVRLEYPLRKSVYIKLFfSLC-----IEGYLEkahdVLK 580
Cdd:PLN03218  388 DCIDLLEDMEKRglldmDKIYHAKFFKA-CKKQRAVKEAFRFAKLIRNPTLSTFNMLM-SVCassqdIDGALR----VLR 461

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790   581 KMSAYRVEPGRSMCGKMIGAFCKLNNVREAQVLFDTMVERGLIPDLFTYTIMIHTYCRLNELQKAESLFEDMKQRGIKPD 660
Cdd:PLN03218  462 LVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD 541

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790   661 VVTYTVLLDrylkldpehheTCSVQGEVgkRKASEVLREFSAAG--IGLDVVCYTVLIDRQCKMNNLEQAAELFDRMIDS 738
Cdd:PLN03218  542 RVVFNALIS-----------ACGQSGAV--DRAFDVLAEMKAEThpIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY 608

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 15225790   739 GLEPDMVAYTTLISSYFRKGYIDMAVTLVTELSKKYNIPSESFEAAVKSAALKAKR 794
Cdd:PLN03218  609 NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGD 664
PLN03077 PLN03077
Protein ECB2; Provisional
 140-515 1.07e-08

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 58.71  E-value: 1.07e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790  140 KRSFVL-IRVSGALVKAYVSLGMFDEATDVLFQSKRLDCV---VDIKAC--NFLMNRMTEfgkigmlmtLFKQLKQLGLC 213
Cdd:PLN03077 316 KTGFAVdVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVswtAMISGYekNGLPDKALE---------TYALMEQDNVS 386

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790  214 ANEYTYAIVVKALCRKGNLEEAAML--LIENESVFGYKTFINGLcvtgetekavalilelidrkylagddlravLGMVVR 291
Cdd:PLN03077 387 PDEITIASVLSACACLGDLDVGVKLheLAERKGLISYVVVANAL------------------------------IEMYSK 436

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790  292 GFCNEmkmKAAEsVIIEMEEigfgLDVYACLAVIDRYCKNMNLPEALGFLDKMLGKgLKVNCVIVSLILQCYCKMDMCLE 371
Cdd:PLN03077 437 CKCID---KALE-VFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMC 507

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790  372 ALEKFKEFRDMNIFLDRVCYNVAFDALSKLGRVEEAFELLQEMKDrgivpDVINYTTLIDGYCLQGKVVDALDLIDEMIG 451
Cdd:PLN03077 508 GKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEK-----DVVSWNILLTGYVAHGKGSMAVELFNRMVE 582

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15225790  452 NGMSPDLITYNVLVSGLARNGHEEEVLEIYERMKAE-GPKPNAVTNSVIIEGLCFARKVKEAEDF 515
Cdd:PLN03077 583 SGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKySITPNLKHYACVVDLLGRAGKLTEAYNF 647
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 612-671 1.45e-08

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 51.59  E-value: 1.45e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790   612 VLFDTMVERGLIPDLFTYTIMIHTYCRLNELQKAESLFEDMKQRGIKPDVVTYTVLLDRY 671
Cdd:pfam13812   1 SILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVI 60
PLN03077 PLN03077
Protein ECB2; Provisional
 329-771 1.56e-08

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 58.32  E-value: 1.56e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790  329 CKNMNLPEALGFLDKMLGKGLKVN-CVIVSLILQCYCK------MDMCLEALEKFKEF--RDMNIFLDrvcynvafdALS 399
Cdd:PLN03077  62 CSHGQLEQALKLLESMQELRVPVDeDAYVALFRLCEWKraveegSRVCSRALSSHPSLgvRLGNAMLS---------MFV 132

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790  400 KLGRVEEAFELLQEMKDRgivpDVINYTTLIDGYCLQGKVVDALDLIDEMIGNGMSPDLITY-NVL-----VSGLARnGH 473
Cdd:PLN03077 133 RFGELVHAWYVFGKMPER----DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFpCVLrtcggIPDLAR-GR 207

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790  474 EEEVLEIYERMKAEGPKPNAVTNSVIIEGlcfarKVKEAEDFFSSLEQKCPENKASFVKGYCEAGLSKKAYKAFVRLeyp 553
Cdd:PLN03077 208 EVHAHVVRFGFELDVDVVNALITMYVKCG-----DVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTM--- 279

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790  554 LRKSVYIKLFFSLCIEGYLEKAHDVL--KKMSAYRVEPGR----SMCGKMIGAFCKLNNVREAQVLFDTMVERglipDLF 627
Cdd:PLN03077 280 RELSVDPDLMTITSVISACELLGDERlgREMHGYVVKTGFavdvSVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAV 355

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790  628 TYTIMIHTYCRLNELQKAESLFEDMKQRGIKPDVVTYTVLLdrylkldpehhETCSVQGEVGKrkaSEVLREFS-AAGIG 706
Cdd:PLN03077 356 SWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVL-----------SACACLGDLDV---GVKLHELAeRKGLI 421

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790  707 LDVVCYTVLIDRQCKMNNLEQAAELFDRMIDSglepDMVAYTTLISS------------YFRKGYIDM---AVTLVTELS 771
Cdd:PLN03077 422 SYVVVANALIEMYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGlrlnnrcfealiFFRQMLLTLkpnSVTLIAALS 497
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 627-661 2.05e-08

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 50.53  E-value: 2.05e-08
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 15225790   627 FTYTIMIHTYCRLNELQKAESLFEDMKQRGIKPDV 661
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 620-653 4.52e-08

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 49.27  E-value: 4.52e-08
                          10        20        30
                  ....*....|....*....|....*....|....
gi 15225790   620 RGLIPDLFTYTIMIHTYCRLNELQKAESLFEDMK 653
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 445-507 8.35e-08

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 49.66  E-value: 8.35e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15225790   445 LIDEMIGNGMSPDLITYNVLVSGLARNGHEEEVLEIYERMKAEGPKPNAVTNSVIIeGLCFAR 507
Cdd:pfam13812   2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAIL-GVIGGR 63
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 429-770 1.65e-07

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 55.27  E-value: 1.65e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790   429 LIDGYCLQGKVVDALDLIDEMIGNGMSPDLI-TYNVLVSGLARngheEEVLEIYE----RMKAEGP------KPNAVTNS 497
Cdd:PLN03218  247 SIAESLFTQTVLDSLDYDSYEYNGLLQEAAIsSGKGIFAESKR----EELYTFYEekqsRAKSSRLpnvkglRKGVSSAT 322

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790   498 VIIEGLCFARKVKEAEDFFSSLEQKCPENKASFVKGYCEAGLSKKAYKAFvrleyplrksvYIKLFFSLCIEGYLEKAHD 577
Cdd:PLN03218  323 NSLSLDKKNNGVKDAELPGQSSGQAASDVEEENSLAAYNGGVSGKRKSPE-----------YIDAYNRLLRDGRIKDCID 391

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790   578 VLKKMSayrvEPGRSMCGKMIGA----FCKLNNVREAQVLFDTMVergLIPDLFTYTIMIHTYCRLNELQKAESLFEDMK 653
Cdd:PLN03218  392 LLEDME----KRGLLDMDKIYHAkffkACKKQRAVKEAFRFAKLI---RNPTLSTFNMLMSVCASSQDIDGALRVLRLVQ 464

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790   654 QRGIKPDVVTYTVLLdrylkldpehhETCSVQGEVGKrkASEVLREFSAAGIGLDVVCYTVLIDRQCKMNNLEQAAELFD 733
Cdd:PLN03218  465 EAGLKADCKLYTTLI-----------STCAKSGKVDA--MFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYG 531

                         330       340       350
                  ....*....|....*....|....*....|....*..
gi 15225790   734 RMIDSGLEPDMVAYTTLISSYFRKGYIDMAVTLVTEL 770
Cdd:PLN03218  532 IMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEM 568
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 391-773 1.93e-07

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 54.88  E-value: 1.93e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790   391 YNVAFDALSKLGRVEEAFELLQEMKDRGIVP-DVINYTTLIDGYCLQGKVVDALDLIDEMigngMSPDLITYNVLVSGLA 469
Cdd:PLN03218  373 YIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDmDKIYHAKFFKACKKQRAVKEAFRFAKLI----RNPTLSTFNMLMSVCA 448

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790   470 RNGHEEEVLEIYERMKAEGPKPNAVtnsviieglcfarkvkeaedFFSSLEQKCPenkasfvkgyceaglskkaykafvr 549
Cdd:PLN03218  449 SSQDIDGALRVLRLVQEAGLKADCK--------------------LYTTLISTCA------------------------- 483

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790   550 leyplrKSVYIKLFFslciegylekahDVLKKMSAYRVEPGRSMCGKMIGAFCKLNNVREAQVLFDTMVERGLIPDLFTY 629
Cdd:PLN03218  484 ------KSGKVDAMF------------EVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVF 545

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790   630 TIMIHTYCRLNELQKAESLFEDMKQRG--IKPDVVTYTVLLdrylkldpehhETCSVQGEVGKrkASEVLREFSAAGIGL 707
Cdd:PLN03218  546 NALISACGQSGAVDRAFDVLAEMKAEThpIDPDHITVGALM-----------KACANAGQVDR--AKEVYQMIHEYNIKG 612

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15225790   708 DVVCYTVLIDRQCKMNNLEQAAELFDRMIDSGLEPDMVAYTTLISSYFRKGYIDMAVTLVTELSKK 773
Cdd:PLN03218  613 TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ 678
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 389-423 3.69e-07

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 47.06  E-value: 3.69e-07
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 15225790   389 VCYNVAFDALSKLGRVEEAFELLQEMKDRGIVPDV 423
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 500-770 5.02e-06

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 50.25  E-value: 5.02e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790  500 IEGLCFARKVKEAEDFFSSLEQKCPENkasfvkgyceagLSKKAYKAFVRLEYPLRKSVYIKlffslciegylekahDVL 579
Cdd:PLN03081  94 IEKLVACGRHREALELFEILEAGCPFT------------LPASTYDALVEACIALKSIRCVK---------------AVY 146

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790  580 KKMSAYRVEPGRSMCGKMIGAFCKLNNVREAQVLFDTMVERglipDLFTYTIMIHTYCRLNELQKAESLFEDMKQRGIKP 659
Cdd:PLN03081 147 WHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPER----NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDA 222

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790  660 DVVTYTVLLdrylkldpeHHETCSVQGEVGKRKASEVLRefsaAGIGLDVVCYTVLIDRQCKMNNLEQAAELFDRMIdsg 739
Cdd:PLN03081 223 EPRTFVVML---------RASAGLGSARAGQQLHCCVLK----TGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP--- 286

                        250       260       270
                 ....*....|....*....|....*....|.
gi 15225790  740 lEPDMVAYTTLISSYFRKGYIDMAVTLVTEL 770
Cdd:PLN03081 287 -EKTTVAWNSMLAGYALHGYSEEALCLYYEM 316
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 627-657 6.63e-06

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 43.22  E-value: 6.63e-06
                          10        20        30
                  ....*....|....*....|....*....|.
gi 15225790   627 FTYTIMIHTYCRLNELQKAESLFEDMKQRGI 657
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 426-457 9.74e-06

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 42.83  E-value: 9.74e-06
                          10        20        30
                  ....*....|....*....|....*....|..
gi 15225790   426 YTTLIDGYCLQGKVVDALDLIDEMIGNGMSPD 457
Cdd:TIGR00756   3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 442-589 1.82e-05

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 46.62  E-value: 1.82e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790   442 ALDLIDEMIGNGMSPDLITYNVLV-----SGLARNGHEEE----VLEIYERMKAEGPKPNAVTNSVIieglcfARKVKEA 512
Cdd:pfam17177  30 ALALYDAAKAEGVRLAQYHYNVLLylcskAADATDLKPQLaadrGFEVFEAMKAQGVSPNEATYTAV------ARLAAAK 103

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15225790   513 EDFfssleqkcpENKASFVKGYCEAGLSKKaykafvrleypLRKsvYIKLFFSLCIEGYLEKAHDVLKKMSAYRVEP 589
Cdd:pfam17177 104 GDG---------DLAFDLVKEMEAAGVSPR-----------LRS--YSPALHAYCEAGDADKAYEVEEHMLAHGVEL 158
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 459-493 2.38e-05

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 41.67  E-value: 2.38e-05
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 15225790   459 ITYNVLVSGLARNGHEEEVLEIYERMKAEGPKPNA 493
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 389-419 2.57e-05

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 41.68  E-value: 2.57e-05
                          10        20        30
                  ....*....|....*....|....*....|.
gi 15225790   389 VCYNVAFDALSKLGRVEEAFELLQEMKDRGI 419
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PLN03077 PLN03077
Protein ECB2; Provisional
 293-522 5.69e-05

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 46.77  E-value: 5.69e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790  293 FCNEM--------KMKAAESVIIEMEEigfgLDVYACLAVIDRYCKNMnLPE-ALGFLDKMLGKGLKVNCV-IVSLILQC 362
Cdd:PLN03077 325 VCNSLiqmylslgSWGEAEKVFSRMET----KDAVSWTAMISGYEKNG-LPDkALETYALMEQDNVSPDEItIASVLSAC 399

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790  363 YC--KMDMCLEaLEKFKEFRDMNIFLdrVCYNVAFDALSKLGRVEEAFELLQEMKDRgivpDVINYTTLIDGYCLQGKVV 440
Cdd:PLN03077 400 AClgDLDVGVK-LHELAERKGLISYV--VVANALIEMYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCF 472

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790  441 DALDLIDEMIG----------------------------------------------------------------NGMSP 456
Cdd:PLN03077 473 EALIFFRQMLLtlkpnsvtliaalsacarigalmcgkeihahvlrtgigfdgflpnalldlyvrcgrmnyawnqfNSHEK 552

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15225790  457 DLITYNVLVSGLARNGHEEEVLEIYERMKAEGPKPNAVTNSVIIEGLCFARKVKEAEDFFSSLEQK 522
Cdd:PLN03077 553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEK 618
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 710-743 5.87e-05

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 40.52  E-value: 5.87e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 15225790   710 VCYTVLIDRQCKMNNLEQAAELFDRMIDSGLEPD 743
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 459-488 1.09e-04

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 39.76  E-value: 1.09e-04
                          10        20        30
                  ....*....|....*....|....*....|
gi 15225790   459 ITYNVLVSGLARNGHEEEVLEIYERMKAEG 488
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKG 30
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 180-228 1.14e-04

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 40.42  E-value: 1.14e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 15225790   180 DIKACNFLMNRMTEFGKIGMLMTLFKQLKQLGLCANEYTYAIVVKALCR 228
Cdd:pfam13041   2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 426-454 1.50e-04

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 39.37  E-value: 1.50e-04
                          10        20
                  ....*....|....*....|....*....
gi 15225790   426 YTTLIDGYCLQGKVVDALDLIDEMIGNGM 454
Cdd:pfam01535   3 YNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR_long pfam17177
Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large ...
 578-668 1.83e-04

Pentacotripeptide-repeat region of PRORP; Pentatricopeptide repeat (PPR) proteins are a large family of modular RNA-binding proteins which mediate several aspects of gene expression primarily in organelles but also in the nucleus. PPR_long is the region of Arabidopsis protein-only RNase P (PRORP) enzyme that consists of up to eleven alpha-helices. PRORPs are a class of RNA processing enzymes that catalyze maturation of the 5' end of precursor tRNAs in Eukaryotes. All PPR proteins contain tandemly repeated sequence motifs (the PPR motifs) which can vary in number. The series of helix-turn-helix motifs formed by PPR motifs throughout the protein produces a superheros with a central groove that allows the protein to bind RNA. Proteins containing PPR motifs are known to have roles in transcription, RNA processing, splicing, stability, editing, and translation. Over a decade after the discovery of PPR proteins, the super-helical structure was confirmed. The protein-only mitochondrial RNase P crystal structure from Arabidopsis thaliana (PRORP1) confirmed the role of its PPR motifs in pre-tRNA binding and suggest it has evolved independently from other RNase P proteins that rely on catalytic RNA.


Pssm-ID: 407303 [Multi-domain]  Cd Length: 212  Bit Score: 43.54  E-value: 1.83e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790   578 VLKKMSAYRVEPGRSMCGKMIGAFCKLNNVREAQVLFDTMVERGLIPDLFTYTIMIHTYCRLNELQKAESLFEDMKQRGI 657
Cdd:pfam17177  77 VFEAMKAQGVSPNEATYTAVARLAAAKGDGDLAFDLVKEMEAAGVSPRLRSYSPALHAYCEAGDADKAYEVEEHMLAHGV 156

                          90
                  ....*....|.
gi 15225790   658 KPDVVTYTVLL 668
Cdd:pfam17177 157 ELEEPELAALL 167
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 452-485 2.06e-04

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 39.25  E-value: 2.06e-04
                          10        20        30
                  ....*....|....*....|....*....|....
gi 15225790   452 NGMSPDLITYNVLVSGLARNGHEEEVLEIYERMK 485
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 739-769 2.14e-04

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 39.25  E-value: 2.14e-04
                          10        20        30
                  ....*....|....*....|....*....|.
gi 15225790   739 GLEPDMVAYTTLISSYFRKGYIDMAVTLVTE 769
Cdd:pfam12854   2 GLKPDVVTYNTLINGLCRAGRVDEAFELLDE 32
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 704-735 2.61e-04

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 38.87  E-value: 2.61e-04
                          10        20        30
                  ....*....|....*....|....*....|..
gi 15225790   704 GIGLDVVCYTVLIDRQCKMNNLEQAAELFDRM 735
Cdd:pfam12854   2 GLKPDVVTYNTLINGLCRAGRVDEAFELLDEM 33
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 211-241 3.11e-04

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 38.48  E-value: 3.11e-04
                          10        20        30
                  ....*....|....*....|....*....|.
gi 15225790   211 GLCANEYTYAIVVKALCRKGNLEEAAMLLIE 241
Cdd:pfam12854   2 GLKPDVVTYNTLINGLCRAGRVDEAFELLDE 32
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 696-754 7.77e-04

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 38.49  E-value: 7.77e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 15225790   696 VLREFSAAGIGLDVVCYTVLIDRQCKMNNLEQAAELFDRMIDSGLEPDMVAYTTLISSY 754
Cdd:pfam13812   2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVI 60
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 382-415 1.72e-03

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 36.55  E-value: 1.72e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 15225790   382 MNIFLDRVCYNVAFDALSKLGRVEEAFELLQEMK 415
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 487-516 3.71e-03

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 35.40  E-value: 3.71e-03
                          10        20        30
                  ....*....|....*....|....*....|
gi 15225790   487 EGPKPNAVTNSVIIEGLCFARKVKEAEDFF 516
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELL 30
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 173-267 4.25e-03

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 40.63  E-value: 4.25e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15225790   173 KRLDCVVDIKAC---------NFLMNRMTEFGKIGMLMTLFKQLKQLGLCANEYTYAIVVKALCRKGNLEEAAMLLIE-- 241
Cdd:PLN03218  702 KALELYEDIKSIklrptvstmNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQak 781

                          90       100
                  ....*....|....*....|....*....
gi 15225790   242 NESV---FGYKTFINGLCVTgETEKAVAL 267
Cdd:PLN03218  782 EDGIkpnLVMCRCITGLCLR-RFEKACAL 809
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 710-740 6.23e-03

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 34.75  E-value: 6.23e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 15225790   710 VCYTVLIDRQCKMNNLEQAAELFDRMIDSGL 740
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 742-776 6.44e-03

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 35.42  E-value: 6.44e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 15225790   742 PDMVAYTTLISSYFRKGYIDMAVTLVTELSKK--------YNI 776
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRgvkpnvytYTI 43
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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