|
Name |
Accession |
Description |
Interval |
E-value |
| NanM super family |
cl34543 |
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis]; |
202-339 |
3.79e-15 |
|
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
The actual alignment was detected with superfamily member COG3055:
Pssm-ID: 442289 [Multi-domain] Cd Length: 277 Bit Score: 75.19 E-value: 3.79e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254504 202 RSLPSMKMARCRAAAGVIDGKIYVIGG-RKVRTSDWVEVFDLKKQSWSSVPgPYPEAfGRGEFLTyAVMKEKIY------ 274
Cdd:COG3055 4 SSLPDLPTPRSEAAAALLDGKVYVAGGlSGGSASNSFEVYDPATNTWSELA-PLPGP-PRHHAAA-VAQDGKLYvfggft 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 240254504 275 ----CLDLTRNIHIYDPKESKWEswTHGPLSASWNDSSCVVDN---LLFCINTSVYFLGWpIKIYDPEKKTW 339
Cdd:COG3055 81 ganpSSTPLNDVYVYDPATNTWT--KLAPMPTPRGGATALLLDgkiYVVGGWDDGGNVAW-VEVYDPATGTW 149
|
|
| F-box_SF super family |
cl45894 |
F-box domain superfamily; This short domain is commonly found at the N-terminus of various ... |
40-80 |
6.16e-09 |
|
F-box domain superfamily; This short domain is commonly found at the N-terminus of various proteins, and typically co-occurs with one or more other conserved domains or motifs, such as leucine rich repeats, WD40 repeats, kelch, tub, spry, and others. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. One of the best researched roles of F-box proteins is their participation in SCF (Skp1-Cul1-F-box protein), a multi-protein complex that functions as a ubiquitin E3 ligase, where the role of the F-box protein is to recruit target substrates. Gene families containing the F-box are found greatly expanded in narrow taxonomic lineages, such as flowering plants and nematodes. In this hierarchical classification, many of the subfamilies are named according to their domain architectures.
The actual alignment was detected with superfamily member cd22152:
Pssm-ID: 459239 Cd Length: 45 Bit Score: 51.42 E-value: 6.16e-09
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 240254504 40 LPIPEELILRCFLLVRRCHHPSLSLVCRSFHSLMS--KLYDDR 80
Cdd:cd22152 3 PGLPDDIALQCLARVPRSSHPSLSLVSKSWRSLLSspELFRVR 45
|
|
| NanM super family |
cl34543 |
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis]; |
128-241 |
1.00e-05 |
|
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
The actual alignment was detected with superfamily member COG3055:
Pssm-ID: 442289 [Multi-domain] Cd Length: 277 Bit Score: 47.07 E-value: 1.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254504 128 SLPPMP---WGSTVVTIGSD-IYVIGGRvgeklleDVGVGYNK-----PISGGRRGETSIRGGH-----AGERRISDVTH 193
Cdd:COG3055 151 QLAPLPtprDHLAAAVLPDGkILVIGGR-------NGSGFSNTwttlaPLPTARAGHAAAVLGGkilvfGGESGFSDEVE 223
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 240254504 194 I-NCRFHEYRSLPSMKMARCRAAAGVIDGKIYVIGGRK---VRTSDW--VEVFD 241
Cdd:COG3055 224 AyDPATNTWTALGELPTPRHGHAAVLTDGKVYVIGGETkpgVRTPLVtsAEVYD 277
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| NanM |
COG3055 |
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis]; |
202-339 |
3.79e-15 |
|
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442289 [Multi-domain] Cd Length: 277 Bit Score: 75.19 E-value: 3.79e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254504 202 RSLPSMKMARCRAAAGVIDGKIYVIGG-RKVRTSDWVEVFDLKKQSWSSVPgPYPEAfGRGEFLTyAVMKEKIY------ 274
Cdd:COG3055 4 SSLPDLPTPRSEAAAALLDGKVYVAGGlSGGSASNSFEVYDPATNTWSELA-PLPGP-PRHHAAA-VAQDGKLYvfggft 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 240254504 275 ----CLDLTRNIHIYDPKESKWEswTHGPLSASWNDSSCVVDN---LLFCINTSVYFLGWpIKIYDPEKKTW 339
Cdd:COG3055 81 ganpSSTPLNDVYVYDPATNTWT--KLAPMPTPRGGATALLLDgkiYVVGGWDDGGNVAW-VEVYDPATGTW 149
|
|
| Kelch_1 |
pfam01344 |
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six ... |
210-251 |
8.80e-10 |
|
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Swiss:Q04652 is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415.
Pssm-ID: 396078 [Multi-domain] Cd Length: 46 Bit Score: 53.77 E-value: 8.80e-10
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 240254504 210 ARCRAAAGVIDGKIYVIGGRKVRTS-DWVEVFDLKKQSWSSVP 251
Cdd:pfam01344 1 RRSGAGVVVVGGKIYVIGGFDGNQSlNSVEVYDPETNTWSKLP 43
|
|
| F-box_AtAFR-like |
cd22152 |
F-box domain found in Arabidopsis thaliana protein ATTENUATED FAR-RED RESPONSE (AtAFR) and ... |
40-80 |
6.16e-09 |
|
F-box domain found in Arabidopsis thaliana protein ATTENUATED FAR-RED RESPONSE (AtAFR) and similar proteins; AtAFR, also called SKP1-interacting partner 29 (AtSKIP29), or F-box protein AFR, is a component of SCF (SKP1/ASK-cullin-F-box protein) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. It is part of the phyA-mediated signaling transduction pathway leading to the regulation of gene expression and hypocotyl elongation in response to red and far-red light exposure. This subfamily also includes many other Arabidopsis thaliana SKP1-interacting partner proteins. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression.
Pssm-ID: 438923 Cd Length: 45 Bit Score: 51.42 E-value: 6.16e-09
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 240254504 40 LPIPEELILRCFLLVRRCHHPSLSLVCRSFHSLMS--KLYDDR 80
Cdd:cd22152 3 PGLPDDIALQCLARVPRSSHPSLSLVSKSWRSLLSspELFRVR 45
|
|
| PHA03098 |
PHA03098 |
kelch-like protein; Provisional |
85-339 |
7.57e-09 |
|
kelch-like protein; Provisional
Pssm-ID: 222983 [Multi-domain] Cd Length: 534 Bit Score: 57.47 E-value: 7.57e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254504 85 YTENVLYAYVGFPPVENPSWYILHRKPYRNLPNTISLKLCKIDSLPpMPWGSTVVTIGSDIYVIGGRVGEKLLEDVGVGY 164
Cdd:PHA03098 238 NLNKILPRSSTFGSIIYIHITMSIFTYNYITNYSPLSEINTIIDIH-YVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSY 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254504 165 N---------KPISGGRRGETSIR--------GGHAGERRISDVTHINCRFHEYRSLPSMKMARCRAAAGVIDGKIYVIG 227
Cdd:PHA03098 317 DtktkswnkvPELIYPRKNPGVTVfnnriyviGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIG 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254504 228 GRKV--RTSDWVEVFDLKKQSWSSV-PGPYPEAFGRGefltyAVMKEKIYCL---------DLTRNIHIYDPKESKW--E 293
Cdd:PHA03098 397 GISKndELLKTVECFSLNTNKWSKGsPLPISHYGGCA-----IYHDGKIYVIggisyidniKVYNIVESYNPVTNKWteL 471
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 240254504 294 SWTHGPLSaswNDSSCVVDNLLFCINTSVYFLGWP-IKIYDPEKKTW 339
Cdd:PHA03098 472 SSLNFPRI---NASLCIFNNKIYVVGGDKYEYYINeIEVYDDKTNTW 515
|
|
| NanM |
COG3055 |
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis]; |
128-241 |
1.00e-05 |
|
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442289 [Multi-domain] Cd Length: 277 Bit Score: 47.07 E-value: 1.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254504 128 SLPPMP---WGSTVVTIGSD-IYVIGGRvgeklleDVGVGYNK-----PISGGRRGETSIRGGH-----AGERRISDVTH 193
Cdd:COG3055 151 QLAPLPtprDHLAAAVLPDGkILVIGGR-------NGSGFSNTwttlaPLPTARAGHAAAVLGGkilvfGGESGFSDEVE 223
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 240254504 194 I-NCRFHEYRSLPSMKMARCRAAAGVIDGKIYVIGGRK---VRTSDW--VEVFD 241
Cdd:COG3055 224 AyDPATNTWTALGELPTPRHGHAAVLTDGKVYVIGGETkpgVRTPLVtsAEVYD 277
|
|
| F-box |
pfam00646 |
F-box domain; This domain is approximately 50 amino acids long, and is usually found in the ... |
42-76 |
1.75e-03 |
|
F-box domain; This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression.
Pssm-ID: 425796 Cd Length: 43 Bit Score: 35.98 E-value: 1.75e-03
10 20 30
....*....|....*....|....*....|....*
gi 240254504 42 IPEELILRCFLLVRRCHHPSLSLVCRSFHSLMSKL 76
Cdd:pfam00646 4 LPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSL 38
|
|
| PHA03098 |
PHA03098 |
kelch-like protein; Provisional |
138-255 |
2.05e-03 |
|
kelch-like protein; Provisional
Pssm-ID: 222983 [Multi-domain] Cd Length: 534 Bit Score: 40.52 E-value: 2.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254504 138 VVTIGSDIYVIGGRV----GEKLLEDVGVGYNKPISGGR------RGETSIRGGH----------AGERRISDVTHINCR 197
Cdd:PHA03098 385 VVNVNNLIYVIGGISkndeLLKTVECFSLNTNKWSKGSPlpishyGGCAIYHDGKiyviggisyiDNIKVYNIVESYNPV 464
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 240254504 198 FHEYRSLPSMKMARCRAAAGVIDGKIYVIGGRKVR-TSDWVEVFDLKKQSWSSVPGPYP 255
Cdd:PHA03098 465 TNKWTELSSLNFPRINASLCIFNNKIYVVGGDKYEyYINEIEVYDDKTNTWTLFCKFPK 523
|
|
| Kelch |
smart00612 |
Kelch domain; |
180-221 |
2.60e-03 |
|
Kelch domain;
Pssm-ID: 128874 [Multi-domain] Cd Length: 47 Bit Score: 35.61 E-value: 2.60e-03
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 240254504 180 GGHAGERRISDVTHINCRFHEYRSLPSMKMARCRAAAGVIDG 221
Cdd:smart00612 6 GGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| NanM |
COG3055 |
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis]; |
202-339 |
3.79e-15 |
|
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442289 [Multi-domain] Cd Length: 277 Bit Score: 75.19 E-value: 3.79e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254504 202 RSLPSMKMARCRAAAGVIDGKIYVIGG-RKVRTSDWVEVFDLKKQSWSSVPgPYPEAfGRGEFLTyAVMKEKIY------ 274
Cdd:COG3055 4 SSLPDLPTPRSEAAAALLDGKVYVAGGlSGGSASNSFEVYDPATNTWSELA-PLPGP-PRHHAAA-VAQDGKLYvfggft 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 240254504 275 ----CLDLTRNIHIYDPKESKWEswTHGPLSASWNDSSCVVDN---LLFCINTSVYFLGWpIKIYDPEKKTW 339
Cdd:COG3055 81 ganpSSTPLNDVYVYDPATNTWT--KLAPMPTPRGGATALLLDgkiYVVGGWDDGGNVAW-VEVYDPATGTW 149
|
|
| NanM |
COG3055 |
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis]; |
128-339 |
3.83e-15 |
|
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442289 [Multi-domain] Cd Length: 277 Bit Score: 75.19 E-value: 3.83e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254504 128 SLPPMP---WGSTVVTIGSDIYVIGGRVGEKLLEDVGVgYN---------KPISGGRRGETSI------------RGGHA 183
Cdd:COG3055 5 SLPDLPtprSEAAAALLDGKVYVAGGLSGGSASNSFEV-YDpatntwselAPLPGPPRHHAAAvaqdgklyvfggFTGAN 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254504 184 GERRISDVTHI-NCRFHEYRSLPSMKMARCRAAAGVIDGKIYVIGGRK-VRTSDWVEVFDLKKQSWSSVPgPYPEAfgRG 261
Cdd:COG3055 84 PSSTPLNDVYVyDPATNTWTKLAPMPTPRGGATALLLDGKIYVVGGWDdGGNVAWVEVYDPATGTWTQLA-PLPTP--RD 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 240254504 262 EFLTYAVMKEKIYCLDlTRNIHIYDpkeSKWESWTHGPlSASWNDSSCVVDNLLFCINTSVYFLGwPIKIYDPEKKTW 339
Cdd:COG3055 161 HLAAAVLPDGKILVIG-GRNGSGFS---NTWTTLAPLP-TARAGHAAAVLGGKILVFGGESGFSD-EVEAYDPATNTW 232
|
|
| NanM |
COG3055 |
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis]; |
128-326 |
1.71e-12 |
|
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442289 [Multi-domain] Cd Length: 277 Bit Score: 67.49 E-value: 1.71e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254504 128 SLPPMP----WGSTVVTIGSDIYVIGGRVG----EKLLEDVGVgYN---------KPISGGRRGETS--------IRGGH 182
Cdd:COG3055 52 ELAPLPgpprHHAAAVAQDGKLYVFGGFTGanpsSTPLNDVYV-YDpatntwtklAPMPTPRGGATAllldgkiyVVGGW 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254504 183 AGERRISDVTHINCRFHEYRSLPSMKMARCRAAAGVI-DGKIYVIGGRKvrtsdwvevFDLKKQSWSSVPgPYPEAFGRG 261
Cdd:COG3055 131 DDGGNVAWVEVYDPATGTWTQLAPLPTPRDHLAAAVLpDGKILVIGGRN---------GSGFSNTWTTLA-PLPTARAGH 200
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 240254504 262 eflTYAVMKEKIYCLDLTRNIH----IYDPKESKWEswTHGPLSASWNDSSCVVdnllfcINTSVYFLG 326
Cdd:COG3055 201 ---AAAVLGGKILVFGGESGFSdeveAYDPATNTWT--ALGELPTPRHGHAAVL------TDGKVYVIG 258
|
|
| Kelch_1 |
pfam01344 |
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six ... |
210-251 |
8.80e-10 |
|
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Swiss:Q04652 is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415.
Pssm-ID: 396078 [Multi-domain] Cd Length: 46 Bit Score: 53.77 E-value: 8.80e-10
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 240254504 210 ARCRAAAGVIDGKIYVIGGRKVRTS-DWVEVFDLKKQSWSSVP 251
Cdd:pfam01344 1 RRSGAGVVVVGGKIYVIGGFDGNQSlNSVEVYDPETNTWSKLP 43
|
|
| F-box_AtAFR-like |
cd22152 |
F-box domain found in Arabidopsis thaliana protein ATTENUATED FAR-RED RESPONSE (AtAFR) and ... |
40-80 |
6.16e-09 |
|
F-box domain found in Arabidopsis thaliana protein ATTENUATED FAR-RED RESPONSE (AtAFR) and similar proteins; AtAFR, also called SKP1-interacting partner 29 (AtSKIP29), or F-box protein AFR, is a component of SCF (SKP1/ASK-cullin-F-box protein) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. It is part of the phyA-mediated signaling transduction pathway leading to the regulation of gene expression and hypocotyl elongation in response to red and far-red light exposure. This subfamily also includes many other Arabidopsis thaliana SKP1-interacting partner proteins. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression.
Pssm-ID: 438923 Cd Length: 45 Bit Score: 51.42 E-value: 6.16e-09
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 240254504 40 LPIPEELILRCFLLVRRCHHPSLSLVCRSFHSLMS--KLYDDR 80
Cdd:cd22152 3 PGLPDDIALQCLARVPRSSHPSLSLVSKSWRSLLSspELFRVR 45
|
|
| PHA03098 |
PHA03098 |
kelch-like protein; Provisional |
85-339 |
7.57e-09 |
|
kelch-like protein; Provisional
Pssm-ID: 222983 [Multi-domain] Cd Length: 534 Bit Score: 57.47 E-value: 7.57e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254504 85 YTENVLYAYVGFPPVENPSWYILHRKPYRNLPNTISLKLCKIDSLPpMPWGSTVVTIGSDIYVIGGRVGEKLLEDVGVGY 164
Cdd:PHA03098 238 NLNKILPRSSTFGSIIYIHITMSIFTYNYITNYSPLSEINTIIDIH-YVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSY 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254504 165 N---------KPISGGRRGETSIR--------GGHAGERRISDVTHINCRFHEYRSLPSMKMARCRAAAGVIDGKIYVIG 227
Cdd:PHA03098 317 DtktkswnkvPELIYPRKNPGVTVfnnriyviGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIG 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254504 228 GRKV--RTSDWVEVFDLKKQSWSSV-PGPYPEAFGRGefltyAVMKEKIYCL---------DLTRNIHIYDPKESKW--E 293
Cdd:PHA03098 397 GISKndELLKTVECFSLNTNKWSKGsPLPISHYGGCA-----IYHDGKIYVIggisyidniKVYNIVESYNPVTNKWteL 471
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 240254504 294 SWTHGPLSaswNDSSCVVDNLLFCINTSVYFLGWP-IKIYDPEKKTW 339
Cdd:PHA03098 472 SSLNFPRI---NASLCIFNNKIYVVGGDKYEYYINeIEVYDDKTNTW 515
|
|
| Kelch_2 |
pfam07646 |
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six ... |
211-253 |
6.68e-06 |
|
Kelch motif; The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Swiss:Q04652 is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415.
Pssm-ID: 462220 [Multi-domain] Cd Length: 47 Bit Score: 43.09 E-value: 6.68e-06
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 240254504 211 RCRAAAGVIDGKIYVIGGRKVRTSDW---VEVFDLKKQSWSSVPGP 253
Cdd:pfam07646 2 RYPHASSVPGGKLYVVGGSDGLGDLSssdVLVYDPETNVWTEVPRL 47
|
|
| NanM |
COG3055 |
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis]; |
128-241 |
1.00e-05 |
|
N-acetylneuraminic acid mutarotase [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442289 [Multi-domain] Cd Length: 277 Bit Score: 47.07 E-value: 1.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254504 128 SLPPMP---WGSTVVTIGSD-IYVIGGRvgeklleDVGVGYNK-----PISGGRRGETSIRGGH-----AGERRISDVTH 193
Cdd:COG3055 151 QLAPLPtprDHLAAAVLPDGkILVIGGR-------NGSGFSNTwttlaPLPTARAGHAAAVLGGkilvfGGESGFSDEVE 223
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 240254504 194 I-NCRFHEYRSLPSMKMARCRAAAGVIDGKIYVIGGRK---VRTSDW--VEVFD 241
Cdd:COG3055 224 AyDPATNTWTALGELPTPRHGHAAVLTDGKVYVIGGETkpgVRTPLVtsAEVYD 277
|
|
| PHA03098 |
PHA03098 |
kelch-like protein; Provisional |
177-342 |
4.46e-05 |
|
kelch-like protein; Provisional
Pssm-ID: 222983 [Multi-domain] Cd Length: 534 Bit Score: 45.53 E-value: 4.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254504 177 SIRGGHAGERRISDVTHINCRFHEYRSLPSMKMARCRAAAGVIDGKIYVIGGRK--VRTSDwVEVFDLKKQSWSSVPgpy 254
Cdd:PHA03098 299 FIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYnsISLNT-VESWKPGESKWREEP--- 374
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254504 255 PEAFGRGEfLTYAVMKEKIYCL-------DLTRNIHIYDPKESKWesWTHGPLSASWNDSSCVV-DNLLFCI----NTSV 322
Cdd:PHA03098 375 PLIFPRYN-PCVVNVNNLIYVIggiskndELLKTVECFSLNTNKW--SKGSPLPISHYGGCAIYhDGKIYVIggisYIDN 451
|
170 180
....*....|....*....|
gi 240254504 323 YFLGWPIKIYDPEKKTWFYL 342
Cdd:PHA03098 452 IKVYNIVESYNPVTNKWTEL 471
|
|
| F-box |
pfam00646 |
F-box domain; This domain is approximately 50 amino acids long, and is usually found in the ... |
42-76 |
1.75e-03 |
|
F-box domain; This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression.
Pssm-ID: 425796 Cd Length: 43 Bit Score: 35.98 E-value: 1.75e-03
10 20 30
....*....|....*....|....*....|....*
gi 240254504 42 IPEELILRCFLLVRRCHHPSLSLVCRSFHSLMSKL 76
Cdd:pfam00646 4 LPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSL 38
|
|
| PHA03098 |
PHA03098 |
kelch-like protein; Provisional |
138-255 |
2.05e-03 |
|
kelch-like protein; Provisional
Pssm-ID: 222983 [Multi-domain] Cd Length: 534 Bit Score: 40.52 E-value: 2.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254504 138 VVTIGSDIYVIGGRV----GEKLLEDVGVGYNKPISGGR------RGETSIRGGH----------AGERRISDVTHINCR 197
Cdd:PHA03098 385 VVNVNNLIYVIGGISkndeLLKTVECFSLNTNKWSKGSPlpishyGGCAIYHDGKiyviggisyiDNIKVYNIVESYNPV 464
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 240254504 198 FHEYRSLPSMKMARCRAAAGVIDGKIYVIGGRKVR-TSDWVEVFDLKKQSWSSVPGPYP 255
Cdd:PHA03098 465 TNKWTELSSLNFPRINASLCIFNNKIYVVGGDKYEyYINEIEVYDDKTNTWTLFCKFPK 523
|
|
| Kelch |
smart00612 |
Kelch domain; |
180-221 |
2.60e-03 |
|
Kelch domain;
Pssm-ID: 128874 [Multi-domain] Cd Length: 47 Bit Score: 35.61 E-value: 2.60e-03
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 240254504 180 GGHAGERRISDVTHINCRFHEYRSLPSMKMARCRAAAGVIDG 221
Cdd:smart00612 6 GGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47
|
|
| Kelch_4 |
pfam13418 |
Galactose oxidase, central domain; |
210-251 |
4.84e-03 |
|
Galactose oxidase, central domain;
Pssm-ID: 433191 [Multi-domain] Cd Length: 49 Bit Score: 34.90 E-value: 4.84e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 240254504 210 ARCRAAAGVI-DGKIYVIGGRKV--RTSDWVEVFDLKKQSWSSVP 251
Cdd:pfam13418 1 PRAYHTSTSIpDDTIYLFGGEGEdgTLLSDLWVFDLSTNEWTRLG 45
|
|
| PHA02713 |
PHA02713 |
hypothetical protein; Provisional |
175-329 |
7.32e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 165086 [Multi-domain] Cd Length: 557 Bit Score: 38.45 E-value: 7.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254504 175 ETSIRGGHA-GERRISDVTHINCRFHEYRSLPSMKMARCRAAAGVIDGKIYVIGGRK-VRTSDWVEVFDLKKQSWSSVPG 252
Cdd:PHA02713 305 EIIIAGGYNfNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNgTNVERTIECYTMGDDKWKMLPD 384
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 240254504 253 pYPEAF----------------GRGEFLTYAVMkEKIYCLDLTRNIHI------YDPKESKWES----WTH--GPLSASW 304
Cdd:PHA02713 385 -MPIALssygmcvldqyiyiigGRTEHIDYTSV-HHMNSIDMEEDTHSsnkvirYDTVNNIWETlpnfWTGtiRPGVVSH 462
|
170 180 190
....*....|....*....|....*....|....
gi 240254504 305 NDSSCVV------DNLLFCI---NTSVYfLGWPI 329
Cdd:PHA02713 463 KDDIYVVcdikdeKNVKTCIfryNTNTY-NGWEL 495
|
|
| |
