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Conserved domains on  [gi|186501301|ref|NP_179429|]
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GATA transcription factor 20 [Arabidopsis thaliana]

Protein Classification

GATA-type transcription factor( domain architecture ID 13433228)

GATA-type transcription factor binds to the DNA consensus sequence [AT]GATA[AG] and may function as a transcription factor/regulator

CATH:  3.30.50.10
Gene Ontology:  GO:0003700|GO:0006357|GO:0006355|GO:0008270|GO:0043565
PubMed:  31574210
SCOP:  4003617

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ZnF_GATA smart00401
zinc finger binding to DNA consensus sequence [AT]GATA[AG];
91-140 1.09e-17

zinc finger binding to DNA consensus sequence [AT]GATA[AG];


:

Pssm-ID: 214648 [Multi-domain]  Cd Length: 52  Bit Score: 73.22  E-value: 1.09e-17
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 186501301    91 PRRCASCDTTSTPLWRNGPKGPKSLCNACGIRFKKEERRATARNLTISGG 140
Cdd:smart00401   3 GRSCSNCGTTETPLWRRGPSGNKTLCNACGLYYKKHGGLKRPLSLKKDGI 52
GAT1 super family cl35034
GATA Zn-finger-containing transcription factor [Transcription];
3-124 2.92e-04

GATA Zn-finger-containing transcription factor [Transcription];


The actual alignment was detected with superfamily member COG5641:

Pssm-ID: 227928 [Multi-domain]  Cd Length: 498  Bit Score: 41.01  E-value: 2.92e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186501301   3 GYQTNSNFSMF-----FSSENDDQNHHNYDPYNNFSSSTSVDCTLSLGTPSTRLDDHHRFSSANSNNISGDFYIHGGNAK 77
Cdd:COG5641   72 GNASISGSPRFvnriqEHRASSRQSSISSLSDFPISSSSSTSNAASPSTNYTDESNQQFSSYNTTLNPGGTSSLNPNNNQ 151

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 186501301  78 TSSYKKGGVahslprrCASCDTTSTPLWRNGPKGPKS----LCNACGIRFK 124
Cdd:COG5641  152 SDNSNQPHV-------CSNCKTTSTPLWRRASSESSLpgnnLCNACGLYLK 195
 
Name Accession Description Interval E-value
ZnF_GATA smart00401
zinc finger binding to DNA consensus sequence [AT]GATA[AG];
91-140 1.09e-17

zinc finger binding to DNA consensus sequence [AT]GATA[AG];


Pssm-ID: 214648 [Multi-domain]  Cd Length: 52  Bit Score: 73.22  E-value: 1.09e-17
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 186501301    91 PRRCASCDTTSTPLWRNGPKGPKSLCNACGIRFKKEERRATARNLTISGG 140
Cdd:smart00401   3 GRSCSNCGTTETPLWRRGPSGNKTLCNACGLYYKKHGGLKRPLSLKKDGI 52
GATA pfam00320
GATA zinc finger; This domain uses four cysteine residues to coordinate a zinc ion. This ...
 94-125 5.67e-15

GATA zinc finger; This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.


Pssm-ID: 425605 [Multi-domain]  Cd Length: 36  Bit Score: 65.80  E-value: 5.67e-15
                          10        20        30
                  ....*....|....*....|....*....|..
gi 186501301   94 CASCDTTSTPLWRNGPKGPKSLCNACGIRFKK 125
Cdd:pfam00320   1 CSNCGTTKTPLWRRGPNGNRTLCNACGLYYKK 32
ZnF_GATA cd00202
Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] ...
 93-125 9.09e-13

Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C


Pssm-ID: 238123 [Multi-domain]  Cd Length: 54  Bit Score: 60.46  E-value: 9.09e-13
                         10        20        30
                 ....*....|....*....|....*....|...
gi 186501301  93 RCASCDTTSTPLWRNGPKGPKSLCNACGIRFKK 125
Cdd:cd00202    1 ACSNCGTTTTPLWRRGPSGGSTLCNACGLYWKK 33
GAT1 COG5641
GATA Zn-finger-containing transcription factor [Transcription];
3-124 2.92e-04

GATA Zn-finger-containing transcription factor [Transcription];


Pssm-ID: 227928 [Multi-domain]  Cd Length: 498  Bit Score: 41.01  E-value: 2.92e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186501301   3 GYQTNSNFSMF-----FSSENDDQNHHNYDPYNNFSSSTSVDCTLSLGTPSTRLDDHHRFSSANSNNISGDFYIHGGNAK 77
Cdd:COG5641   72 GNASISGSPRFvnriqEHRASSRQSSISSLSDFPISSSSSTSNAASPSTNYTDESNQQFSSYNTTLNPGGTSSLNPNNNQ 151

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 186501301  78 TSSYKKGGVahslprrCASCDTTSTPLWRNGPKGPKS----LCNACGIRFK 124
Cdd:COG5641  152 SDNSNQPHV-------CSNCKTTSTPLWRRASSESSLpgnnLCNACGLYLK 195
 
Name Accession Description Interval E-value
ZnF_GATA smart00401
zinc finger binding to DNA consensus sequence [AT]GATA[AG];
91-140 1.09e-17

zinc finger binding to DNA consensus sequence [AT]GATA[AG];


Pssm-ID: 214648 [Multi-domain]  Cd Length: 52  Bit Score: 73.22  E-value: 1.09e-17
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 186501301    91 PRRCASCDTTSTPLWRNGPKGPKSLCNACGIRFKKEERRATARNLTISGG 140
Cdd:smart00401   3 GRSCSNCGTTETPLWRRGPSGNKTLCNACGLYYKKHGGLKRPLSLKKDGI 52
GATA pfam00320
GATA zinc finger; This domain uses four cysteine residues to coordinate a zinc ion. This ...
 94-125 5.67e-15

GATA zinc finger; This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.


Pssm-ID: 425605 [Multi-domain]  Cd Length: 36  Bit Score: 65.80  E-value: 5.67e-15
                          10        20        30
                  ....*....|....*....|....*....|..
gi 186501301   94 CASCDTTSTPLWRNGPKGPKSLCNACGIRFKK 125
Cdd:pfam00320   1 CSNCGTTKTPLWRRGPNGNRTLCNACGLYYKK 32
ZnF_GATA cd00202
Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] ...
 93-125 9.09e-13

Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C


Pssm-ID: 238123 [Multi-domain]  Cd Length: 54  Bit Score: 60.46  E-value: 9.09e-13
                         10        20        30
                 ....*....|....*....|....*....|...
gi 186501301  93 RCASCDTTSTPLWRNGPKGPKSLCNACGIRFKK 125
Cdd:cd00202    1 ACSNCGTTTTPLWRRGPSGGSTLCNACGLYWKK 33
GAT1 COG5641
GATA Zn-finger-containing transcription factor [Transcription];
3-124 2.92e-04

GATA Zn-finger-containing transcription factor [Transcription];


Pssm-ID: 227928 [Multi-domain]  Cd Length: 498  Bit Score: 41.01  E-value: 2.92e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 186501301   3 GYQTNSNFSMF-----FSSENDDQNHHNYDPYNNFSSSTSVDCTLSLGTPSTRLDDHHRFSSANSNNISGDFYIHGGNAK 77
Cdd:COG5641   72 GNASISGSPRFvnriqEHRASSRQSSISSLSDFPISSSSSTSNAASPSTNYTDESNQQFSSYNTTLNPGGTSSLNPNNNQ 151

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 186501301  78 TSSYKKGGVahslprrCASCDTTSTPLWRNGPKGPKS----LCNACGIRFK 124
Cdd:COG5641  152 SDNSNQPHV-------CSNCKTTSTPLWRRASSESSLpgnnLCNACGLYLK 195
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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