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Conserved domains on  [gi|15226025|ref|NP_179096|]
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Gibberellin-regulated family protein [Arabidopsis thaliana]

Protein Classification

GASA family protein( domain architecture ID 10497058)

gibberellic acid-stimulated arabidopsis (GASA) family protein may play a role in plant growth and development

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
GASA pfam02704
Gibberellin regulated protein; This is the GASA gibberellin regulated cysteine rich protein ...
 50-108 3.04e-23

Gibberellin regulated protein; This is the GASA gibberellin regulated cysteine rich protein family. The expression of these proteins is up-regulated by the plant hormone gibberellin, most of these proteins have some role in plant development. There are 12 cysteine residues conserved within the alignment giving the potential for these proteins to posses 6 disulphide bonds.


:

Pssm-ID: 460657  Cd Length: 60  Bit Score: 84.59  E-value: 3.04e-23
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 15226025    50 CGQKCEGRCKEAGMKDRCLKYCGICCKDCQCVPSGTYGNKHECACYRDKLSSKGTPKCP 108
Cdd:pfam02704   2 CGGACKVRCSKASRKKRCLRACNTCCAKCNCVPPGTYGNKDECPCYRNMKTHGGKPKCP 60
 
Name Accession Description Interval E-value
GASA pfam02704
Gibberellin regulated protein; This is the GASA gibberellin regulated cysteine rich protein ...
 50-108 3.04e-23

Gibberellin regulated protein; This is the GASA gibberellin regulated cysteine rich protein family. The expression of these proteins is up-regulated by the plant hormone gibberellin, most of these proteins have some role in plant development. There are 12 cysteine residues conserved within the alignment giving the potential for these proteins to posses 6 disulphide bonds.


Pssm-ID: 460657  Cd Length: 60  Bit Score: 84.59  E-value: 3.04e-23
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 15226025    50 CGQKCEGRCKEAGMKDRCLKYCGICCKDCQCVPSGTYGNKHECACYRDKLSSKGTPKCP 108
Cdd:pfam02704   2 CGGACKVRCSKASRKKRCLRACNTCCAKCNCVPPGTYGNKDECPCYRNMKTHGGKPKCP 60
 
Name Accession Description Interval E-value
GASA pfam02704
Gibberellin regulated protein; This is the GASA gibberellin regulated cysteine rich protein ...
 50-108 3.04e-23

Gibberellin regulated protein; This is the GASA gibberellin regulated cysteine rich protein family. The expression of these proteins is up-regulated by the plant hormone gibberellin, most of these proteins have some role in plant development. There are 12 cysteine residues conserved within the alignment giving the potential for these proteins to posses 6 disulphide bonds.


Pssm-ID: 460657  Cd Length: 60  Bit Score: 84.59  E-value: 3.04e-23
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 15226025    50 CGQKCEGRCKEAGMKDRCLKYCGICCKDCQCVPSGTYGNKHECACYRDKLSSKGTPKCP 108
Cdd:pfam02704   2 CGGACKVRCSKASRKKRCLRACNTCCAKCNCVPPGTYGNKDECPCYRNMKTHGGKPKCP 60
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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