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Conserved domains on  [gi|15224897|ref|NP_178944|]
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Zinc knuckle (CCHC-type) family protein [Arabidopsis thaliana]

Protein Classification

CCHC-type zinc finger protein( domain architecture ID 1000253)

CCHC-type zinc finger protein similar to human cellular nucleic acid-binding protein, a single-stranded DNA-binding protein that preferentially binds to the sterol regulatory element (SRE) sequence 5'-GTGCGGTG-3', and thereby mediates transcriptional repression

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PTZ00368 super family cl31762
universal minicircle sequence binding protein (UMSBP); Provisional
 27-97 3.41e-11

universal minicircle sequence binding protein (UMSBP); Provisional


The actual alignment was detected with superfamily member PTZ00368:

Pssm-ID: 173561 [Multi-domain]  Cd Length: 148  Bit Score: 56.35  E-value: 3.41e-11
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15224897   27 RRNDYDPRACYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKRTDQVNPKGhCYWCGNQDH 97
Cdd:PTZ00368  71 APPGSGPRSCYNCGQTGHISRECPNRAKGGAARRACYNCGGEGHISRDCPNAGKRPGGDKT-CYNCGQTGH 140
 
Name Accession Description Interval E-value
PTZ00368 PTZ00368
universal minicircle sequence binding protein (UMSBP); Provisional
 27-97 3.41e-11

universal minicircle sequence binding protein (UMSBP); Provisional


Pssm-ID: 173561 [Multi-domain]  Cd Length: 148  Bit Score: 56.35  E-value: 3.41e-11
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15224897   27 RRNDYDPRACYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKRTDQVNPKGhCYWCGNQDH 97
Cdd:PTZ00368  71 APPGSGPRSCYNCGQTGHISRECPNRAKGGAARRACYNCGGEGHISRDCPNAGKRPGGDKT-CYNCGQTGH 140
AIR1 COG5082
Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational ...
 16-116 5.83e-05

Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion];


Pssm-ID: 227414 [Multi-domain]  Cd Length: 190  Bit Score: 40.22  E-value: 5.83e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15224897  16 ERTRASYNNDRRRNdydpRACYKCGKLGHFARSChvvtqpttAYITCYFCSEEGHRSNGCPNKRTdqvnpkghCYWCGNQ 95
Cdd:COG5082  47 DRSVEDVSAIREEN----PVCFNCGQNGHLRRDC--------PHSICYNCSWDGHRSNHCPKPKK--------CYNCGET 106

                        90       100
                ....*....|....*....|.
gi 15224897  96 DHrfnliiWRSRCLFRLMKPK 116
Cdd:COG5082 107 GH------LSRDCNPSKDQQK 121
 
Name Accession Description Interval E-value
PTZ00368 PTZ00368
universal minicircle sequence binding protein (UMSBP); Provisional
 27-97 3.41e-11

universal minicircle sequence binding protein (UMSBP); Provisional


Pssm-ID: 173561 [Multi-domain]  Cd Length: 148  Bit Score: 56.35  E-value: 3.41e-11
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15224897   27 RRNDYDPRACYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKRTDQVNPKGhCYWCGNQDH 97
Cdd:PTZ00368  71 APPGSGPRSCYNCGQTGHISRECPNRAKGGAARRACYNCGGEGHISRDCPNAGKRPGGDKT-CYNCGQTGH 140
PTZ00368 PTZ00368
universal minicircle sequence binding protein (UMSBP); Provisional
 34-97 2.60e-10

universal minicircle sequence binding protein (UMSBP); Provisional


Pssm-ID: 173561 [Multi-domain]  Cd Length: 148  Bit Score: 54.04  E-value: 2.60e-10
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15224897   34 RACYKCGKLGHFARSCHVVtQPTTAYITCYFCSEEGHRSNGCPNKRTDQVNpKGHCYWCGNQDH 97
Cdd:PTZ00368  53 RSCYNCGKTGHLSRECPEA-PPGSGPRSCYNCGQTGHISRECPNRAKGGAA-RRACYNCGGEGH 114
PTZ00368 PTZ00368
universal minicircle sequence binding protein (UMSBP); Provisional
 32-97 3.45e-10

universal minicircle sequence binding protein (UMSBP); Provisional


Pssm-ID: 173561 [Multi-domain]  Cd Length: 148  Bit Score: 54.04  E-value: 3.45e-10
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15224897   32 DPRACYKCGKLGHFARSChVVTQPTTAYITCYFCSEEGHRSNGCPNKRTDQVNPKghCYWCGNQDH 97
Cdd:PTZ00368  26 KARPCYKCGEPGHLSREC-PSAPGGRGERSCYNCGKTGHLSRECPEAPPGSGPRS--CYNCGQTGH 88
PTZ00368 PTZ00368
universal minicircle sequence binding protein (UMSBP); Provisional
 26-78 1.49e-07

universal minicircle sequence binding protein (UMSBP); Provisional


Pssm-ID: 173561 [Multi-domain]  Cd Length: 148  Bit Score: 46.72  E-value: 1.49e-07
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 15224897   26 RRRNDYDPRACYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNK 78
Cdd:PTZ00368  96 RAKGGAARRACYNCGGEGHISRDCPNAGKRPGGDKTCYNCGQTGHLSRDCPDK 148
PTZ00368 PTZ00368
universal minicircle sequence binding protein (UMSBP); Provisional
 36-98 4.26e-07

universal minicircle sequence binding protein (UMSBP); Provisional


Pssm-ID: 173561 [Multi-domain]  Cd Length: 148  Bit Score: 45.57  E-value: 4.26e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15224897   36 CYKCGKLGHFARSC-HVVTQPTTAYITCYFCSEEGHRSNGCPNKRTDQVNPKghCYWCGNQDHR 98
Cdd:PTZ00368   3 CYRCGGVGHQSRECpNSAPAGAAKARPCYKCGEPGHLSRECPSAPGGRGERS--CYNCGKTGHL 64
AIR1 COG5082
Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational ...
 16-116 5.83e-05

Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion];


Pssm-ID: 227414 [Multi-domain]  Cd Length: 190  Bit Score: 40.22  E-value: 5.83e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15224897  16 ERTRASYNNDRRRNdydpRACYKCGKLGHFARSChvvtqpttAYITCYFCSEEGHRSNGCPNKRTdqvnpkghCYWCGNQ 95
Cdd:COG5082  47 DRSVEDVSAIREEN----PVCFNCGQNGHLRRDC--------PHSICYNCSWDGHRSNHCPKPKK--------CYNCGET 106

                        90       100
                ....*....|....*....|.
gi 15224897  96 DHrfnliiWRSRCLFRLMKPK 116
Cdd:COG5082 107 GH------LSRDCNPSKDQQK 121
AIR1 COG5082
Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational ...
 33-97 6.41e-04

Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion];


Pssm-ID: 227414 [Multi-domain]  Cd Length: 190  Bit Score: 37.52  E-value: 6.41e-04
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15224897  33 PRACYKCGKLGHFARSCHVV-TQPttayITCYFCSEEGHRSNGCPN-------KRTDQVNPKGHCYWCGNQDH 97
Cdd:COG5082  97 PKKCYNCGETGHLSRDCNPSkDQQ----KSCFDCNSTRHSSEDCPSiwkhyvlNNGDGHPIKKFCYSCGSAGH 165
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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