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Conserved domains on  [gi|79386560|ref|NP_178066|]
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Carbohydrate-binding X8 domain superfamily protein [Arabidopsis thaliana]

Protein Classification

carbohydrate-binding X8 domain-containing protein( domain architecture ID 10654869)

carbohydrate-binding X8 domain-containing protein similar to Olea europaea major pollen allergen Ole e 10, a carbohydrate-binding protein that preferentially binds 1,3-beta-glucans and may be involved in pollen tube wall re-formation during germination

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
X8 smart00768
Possibly involved in carbohydrate binding; The X8 domain, which may be involved in ...
 311-394 4.31e-41

Possibly involved in carbohydrate binding; The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges.


:

Pssm-ID: 197867 [Multi-domain]  Cd Length: 85  Bit Score: 140.08  E-value: 4.31e-41
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79386560    311 WCVAKPSVPDPIIQEAMNFACGSGADCHSIQPNGPCFKPNTLWAHASFAYNSYWQRTKSTGGSCTFGGTGMLVTVDPSFN 390
Cdd:smart00768   2 WCVAKPDADEAALQAALDYACGQGADCTAIQPGGSCYSPNTVKAHASYAFNSYYQKQGQSSGACDFSGTATITTTDPSTG 81


                   ....
gi 79386560    391 GCHF 394
Cdd:smart00768  82 SCKF 85
PRK12323 super family cl46901
DNA polymerase III subunit gamma/tau;
222-290 6.41e-03

DNA polymerase III subunit gamma/tau;


The actual alignment was detected with superfamily member PRK14971:

Pssm-ID: 481241 [Multi-domain]  Cd Length: 614  Bit Score: 38.60  E-value: 6.41e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 79386560  222 PPESSSNPNPPITIPYPPESSSPNPPEIVPSPPESGYTPGPVLGPPYSEPGPSTPTGSIPSPSSGFLPP 290
Cdd:PRK14971 371 GGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVNP 439
 
Name Accession Description Interval E-value
X8 smart00768
Possibly involved in carbohydrate binding; The X8 domain, which may be involved in ...
 311-394 4.31e-41

Possibly involved in carbohydrate binding; The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges.


Pssm-ID: 197867 [Multi-domain]  Cd Length: 85  Bit Score: 140.08  E-value: 4.31e-41
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79386560    311 WCVAKPSVPDPIIQEAMNFACGSGADCHSIQPNGPCFKPNTLWAHASFAYNSYWQRTKSTGGSCTFGGTGMLVTVDPSFN 390
Cdd:smart00768   2 WCVAKPDADEAALQAALDYACGQGADCTAIQPGGSCYSPNTVKAHASYAFNSYYQKQGQSSGACDFSGTATITTTDPSTG 81


                   ....
gi 79386560    391 GCHF 394
Cdd:smart00768  82 SCKF 85
X8 pfam07983
X8 domain; The X8 domain domain contains at least 6 conserved cysteine residues that ...
 311-381 6.25e-26

X8 domain; The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteriztic of GPI-anchored domains.


Pssm-ID: 400371  Cd Length: 76  Bit Score: 99.59  E-value: 6.25e-26
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 79386560   311 WCVAKPSVPDPIIQEAMNFACGSgADCHSIQPNGP-----CFKPNTLWAHASFAYNSYWQRTKSTGGSCTFGGTGM 381
Cdd:pfam07983   2 WCVAKDSVDDEDLQDLFDYACGQ-ADCSGIQANGTtgkygCYSPCTVKQHLSYAFNSYYQKQGKASSACDFSGSAT 76
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
222-290 6.41e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 38.60  E-value: 6.41e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 79386560  222 PPESSSNPNPPITIPYPPESSSPNPPEIVPSPPESGYTPGPVLGPPYSEPGPSTPTGSIPSPSSGFLPP 290
Cdd:PRK14971 371 GGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVNP 439
 
Name Accession Description Interval E-value
X8 smart00768
Possibly involved in carbohydrate binding; The X8 domain, which may be involved in ...
 311-394 4.31e-41

Possibly involved in carbohydrate binding; The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges.


Pssm-ID: 197867 [Multi-domain]  Cd Length: 85  Bit Score: 140.08  E-value: 4.31e-41
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 79386560    311 WCVAKPSVPDPIIQEAMNFACGSGADCHSIQPNGPCFKPNTLWAHASFAYNSYWQRTKSTGGSCTFGGTGMLVTVDPSFN 390
Cdd:smart00768   2 WCVAKPDADEAALQAALDYACGQGADCTAIQPGGSCYSPNTVKAHASYAFNSYYQKQGQSSGACDFSGTATITTTDPSTG 81


                   ....
gi 79386560    391 GCHF 394
Cdd:smart00768  82 SCKF 85
X8 pfam07983
X8 domain; The X8 domain domain contains at least 6 conserved cysteine residues that ...
 311-381 6.25e-26

X8 domain; The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteriztic of GPI-anchored domains.


Pssm-ID: 400371  Cd Length: 76  Bit Score: 99.59  E-value: 6.25e-26
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 79386560   311 WCVAKPSVPDPIIQEAMNFACGSgADCHSIQPNGP-----CFKPNTLWAHASFAYNSYWQRTKSTGGSCTFGGTGM 381
Cdd:pfam07983   2 WCVAKDSVDDEDLQDLFDYACGQ-ADCSGIQANGTtgkygCYSPCTVKQHLSYAFNSYYQKQGKASSACDFSGSAT 76
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
222-290 6.41e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 38.60  E-value: 6.41e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 79386560  222 PPESSSNPNPPITIPYPPESSSPNPPEIVPSPPESGYTPGPVLGPPYSEPGPSTPTGSIPSPSSGFLPP 290
Cdd:PRK14971 371 GGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVNP 439
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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