|
Name |
Accession |
Description |
Interval |
E-value |
| PLN03077 |
PLN03077 |
Protein ECB2; Provisional |
25-551 |
5.78e-98 |
|
Protein ECB2; Provisional
Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 316.02 E-value: 5.78e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222662 25 QKLHSFVTKSKLARDPYFATQLARFYALNDDLISARKLFDVFPERSVFLWNSIIRAYAKAHQFTTVLSLFSQILRSDTRP 104
Cdd:PLN03077 207 REVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDP 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222662 105 D-----NFTYACLARGfsesfDTKGLRCIHGIAIVSGLGFDQICGSAIVKAYSKAGLIVEASKLFCSIPDPDLALWNVMI 179
Cdd:PLN03077 287 DlmtitSVISACELLG-----DERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMI 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222662 180 LGYGCCGFWDKGINLFNLMQHRGHQPNCYTMVALTSGLIDPSLLLVAWSVHAFCLKINLDSHSYVGCALVNMYSRCMCIA 259
Cdd:PLN03077 362 SGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCID 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222662 260 SACSVFNSISEPDLVACSSLITGYsrCGNHK--EALHLFAELRMSgKKPDCVLVAIVLGSCAELSDSVSGKEVHSYVIRL 337
Cdd:PLN03077 442 KALEVFHNIPEKDVISWTSIIAGL--RLNNRcfEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRT 518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222662 338 GLELDIKVCSALIDMYSKCGLLKCAMSLFAgIPEKNIVSFNSLILGLGLHGFASTAFEKFTEILEMGLIPDEITFSALLC 417
Cdd:PLN03077 519 GIGFDGFLPNALLDLYVRCGRMNYAWNQFN-SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLC 597
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222662 418 TCCHSGLLNKGQEIFERMKSEFGIEPQTEHYVYMVKLMGMAGKLEEAFEFVMSLQKPIDSGILGALLSCCEVHENTHLAE 497
Cdd:PLN03077 598 ACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGE 677
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*
gi 15222662 498 VVAENIHKngEERRSV-YKVMLSNVYARYGRWDEVERLRDGISESYGGKLPGISW 551
Cdd:PLN03077 678 LAAQHIFE--LDPNSVgYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSW 730
|
|
| E_motif |
pfam20431 |
E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) ... |
490-551 |
1.45e-07 |
|
E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) proteins which contain a DYW deaminase domain. The DYW domain is required for RNA editing, a process that deaminates specific cytidines to uridines. This motif, together with the E+ motif, precedes the DYW domain and, although their role is not clear, they are essential in the RNA editing reaction. The E/E+ motifs may contain two degenerate PPR motifs that could be involved in RNA or protein binding.
Pssm-ID: 466580 [Multi-domain] Cd Length: 63 Bit Score: 48.31 E-value: 1.45e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15222662 490 HENTHLAEVvAENIHKNGEERRSVYKVMLSNVYARYGRWDEVERLRDGISESYGGKLPGISW 551
Cdd:pfam20431 1 YSNVELAEK-AANILLELEKTNDGNYTLLSNIYAYAGRWKDVERIRKLMKSSGIKKRPGCSW 61
|
|
| PPR |
TIGR00756 |
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ... |
274-308 |
7.68e-04 |
|
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Pssm-ID: 273253 [Multi-domain] Cd Length: 35 Bit Score: 37.05 E-value: 7.68e-04
10 20 30
....*....|....*....|....*....|....*
gi 15222662 274 VACSSLITGYSRCGNHKEALHLFAELRMSGKKPDC 308
Cdd:TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PLN03077 |
PLN03077 |
Protein ECB2; Provisional |
25-551 |
5.78e-98 |
|
Protein ECB2; Provisional
Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 316.02 E-value: 5.78e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222662 25 QKLHSFVTKSKLARDPYFATQLARFYALNDDLISARKLFDVFPERSVFLWNSIIRAYAKAHQFTTVLSLFSQILRSDTRP 104
Cdd:PLN03077 207 REVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDP 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222662 105 D-----NFTYACLARGfsesfDTKGLRCIHGIAIVSGLGFDQICGSAIVKAYSKAGLIVEASKLFCSIPDPDLALWNVMI 179
Cdd:PLN03077 287 DlmtitSVISACELLG-----DERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMI 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222662 180 LGYGCCGFWDKGINLFNLMQHRGHQPNCYTMVALTSGLIDPSLLLVAWSVHAFCLKINLDSHSYVGCALVNMYSRCMCIA 259
Cdd:PLN03077 362 SGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCID 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222662 260 SACSVFNSISEPDLVACSSLITGYsrCGNHK--EALHLFAELRMSgKKPDCVLVAIVLGSCAELSDSVSGKEVHSYVIRL 337
Cdd:PLN03077 442 KALEVFHNIPEKDVISWTSIIAGL--RLNNRcfEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRT 518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222662 338 GLELDIKVCSALIDMYSKCGLLKCAMSLFAgIPEKNIVSFNSLILGLGLHGFASTAFEKFTEILEMGLIPDEITFSALLC 417
Cdd:PLN03077 519 GIGFDGFLPNALLDLYVRCGRMNYAWNQFN-SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLC 597
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222662 418 TCCHSGLLNKGQEIFERMKSEFGIEPQTEHYVYMVKLMGMAGKLEEAFEFVMSLQKPIDSGILGALLSCCEVHENTHLAE 497
Cdd:PLN03077 598 ACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGE 677
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*
gi 15222662 498 VVAENIHKngEERRSV-YKVMLSNVYARYGRWDEVERLRDGISESYGGKLPGISW 551
Cdd:PLN03077 678 LAAQHIFE--LDPNSVgYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSW 730
|
|
| PLN03081 |
PLN03081 |
pentatricopeptide (PPR) repeat-containing protein; Provisional |
124-551 |
1.31e-78 |
|
pentatricopeptide (PPR) repeat-containing protein; Provisional
Pssm-ID: 215563 [Multi-domain] Cd Length: 697 Bit Score: 260.96 E-value: 1.31e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222662 124 GLRCIHGIAIV------SGLGFDQICGSAIVKAYSKAGLIVEASKLFCSIPDPDLALWNVMILGYGCCGFWDKGINLFNL 197
Cdd:PLN03081 135 ALKSIRCVKAVywhvesSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFRE 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222662 198 MQHRGHQPNCYTMVALTSGLIDPSLLLVAWSVHAFCLKINLDSHSYVGCALVNMYSRCMCIASACSVFNSISEPDLVACS 277
Cdd:PLN03081 215 MWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWN 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222662 278 SLITGYSRCGNHKEALHLFAELRMSGKKPDCVLVAIVLGSCAELSDSVSGKEVHSYVIRLGLELDIKVCSALIDMYSKCG 357
Cdd:PLN03081 295 SMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWG 374
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222662 358 LLKCAMSLFAGIPEKNIVSFNSLILGLGLHGFASTAFEKFTEILEMGLIPDEITFSALLCTCCHSGLLNKGQEIFERMKS 437
Cdd:PLN03081 375 RMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE 454
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222662 438 EFGIEPQTEHYVYMVKLMGMAGKLEEAFEFVMSLQKPIDSGILGALLSCCEVHENTHLAEVVAENIHKNGEERRSVYKVM 517
Cdd:PLN03081 455 NHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVL 534
|
410 420 430
....*....|....*....|....*....|....
gi 15222662 518 LsNVYARYGRWDEVERLRDGISESYGGKLPGISW 551
Cdd:PLN03081 535 L-NLYNSSGRQAEAAKVVETLKRKGLSMHPACTW 567
|
|
| PLN03077 |
PLN03077 |
Protein ECB2; Provisional |
75-433 |
2.23e-43 |
|
Protein ECB2; Provisional
Pssm-ID: 215561 [Multi-domain] Cd Length: 857 Bit Score: 165.41 E-value: 2.23e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222662 75 NSIIRAYAKAHQFTTVLSLFSQILRSDTRPDNFTYACL------ARGFSEsfdtkGLR-CIHGIAIVSGLGFDqiCGSAI 147
Cdd:PLN03077 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALfrlcewKRAVEE-----GSRvCSRALSSHPSLGVR--LGNAM 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222662 148 VKAYSKAGLIVEASKLFCSIPDPDLALWNVMILGYGCCGFWDKGINLFNLMQHRGHQPNCYTM--VALTSGLIdPSLLLv 225
Cdd:PLN03077 128 LSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFpcVLRTCGGI-PDLAR- 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222662 226 AWSVHAFCLKINLDSHSYVGCALVNMYSRCMCIASACSVFNSISEPDLVACSSLITGYSRCGNHKEALHLFAELRMSGKK 305
Cdd:PLN03077 206 GREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVD 285
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222662 306 PDCVLVAIVLGSCAELSDSVSGKEVHSYVIRLGLELDIKVCSALIDMYSKCGLLKCAMSLFAGIPEKNIVSFNSLILGLG 385
Cdd:PLN03077 286 PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYE 365
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 15222662 386 LHGFASTAFEKFTEILEMGLIPDEITFSALLCTCCHSGLLNKGQEIFE 433
Cdd:PLN03077 366 KNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHE 413
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
284-464 |
3.01e-12 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 69.52 E-value: 3.01e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222662 284 SRCGNHKE---ALHLFAELRMSGKKPDCVLVAIVLGSCAElsdsvSGK-----EVHSYVIRLGLELDIKVCSALIDMYSK 355
Cdd:PLN03218 445 SVCASSQDidgALRVLRLVQEAGLKADCKLYTTLISTCAK-----SGKvdamfEVFHEMVNAGVEANVHTFGALIDGCAR 519
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222662 356 CGLLKCAMSLFAGIPEKNI----VSFNSLILGLGLHGFASTAFEKFTeilEMG-----LIPDEITFSALLCTCCHSGLLN 426
Cdd:PLN03218 520 AGQVAKAFGAYGIMRSKNVkpdrVVFNALISACGQSGAVDRAFDVLA---EMKaethpIDPDHITVGALMKACANAGQVD 596
|
170 180 190
....*....|....*....|....*....|....*...
gi 15222662 427 KGQEIFERMKsEFGIEPQTEHYVYMVKLMGMAGKLEEA 464
Cdd:PLN03218 597 RAKEVYQMIH-EYNIKGTPEVYTIAVNSCSQKGDWDFA 633
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
137-437 |
7.96e-10 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 61.82 E-value: 7.96e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222662 137 LGFDQICGSAIVKAYSKAGLIVEASKlFCS-IPDPDLALWNvMILGYgCCGFWD--KGINLFNLMQHRGHQPNC--YTMV 211
Cdd:PLN03218 402 LDMDKIYHAKFFKACKKQRAVKEAFR-FAKlIRNPTLSTFN-MLMSV-CASSQDidGALRVLRLVQEAGLKADCklYTTL 478
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222662 212 ALT---SGLIDPSLLL--------VAWSVHAFCLKINldshsyvGCAlvnmysRCMCIASACSVFNSIS----EPDLVAC 276
Cdd:PLN03218 479 ISTcakSGKVDAMFEVfhemvnagVEANVHTFGALID-------GCA------RAGQVAKAFGAYGIMRsknvKPDRVVF 545
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222662 277 SSLITGYSRCGNHKEALHLFAELRMSGK--KPDCVLVAIVLGSCAELSDSVSGKEV----HSYVIRLGLEldikVCSALI 350
Cdd:PLN03218 546 NALISACGQSGAVDRAFDVLAEMKAETHpiDPDHITVGALMKACANAGQVDRAKEVyqmiHEYNIKGTPE----VYTIAV 621
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222662 351 DMYSKCGLLKCAMSLFAGIPEKNI----VSFNSLILGLGLHGFASTAFEKFTEILEMGLIPDEITFSALLCTCCHSGLLN 426
Cdd:PLN03218 622 NSCSQKGDWDFALSIYDDMKKKGVkpdeVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWK 701
|
330
....*....|.
gi 15222662 427 KGQEIFERMKS 437
Cdd:PLN03218 702 KALELYEDIKS 712
|
|
| E_motif |
pfam20431 |
E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) ... |
490-551 |
1.45e-07 |
|
E motif; This entry represents the E motif found in plant pentatricopeptide repeat (PPR) proteins which contain a DYW deaminase domain. The DYW domain is required for RNA editing, a process that deaminates specific cytidines to uridines. This motif, together with the E+ motif, precedes the DYW domain and, although their role is not clear, they are essential in the RNA editing reaction. The E/E+ motifs may contain two degenerate PPR motifs that could be involved in RNA or protein binding.
Pssm-ID: 466580 [Multi-domain] Cd Length: 63 Bit Score: 48.31 E-value: 1.45e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 15222662 490 HENTHLAEVvAENIHKNGEERRSVYKVMLSNVYARYGRWDEVERLRDGISESYGGKLPGISW 551
Cdd:pfam20431 1 YSNVELAEK-AANILLELEKTNDGNYTLLSNIYAYAGRWKDVERIRKLMKSSGIKKRPGCSW 61
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
313-473 |
3.18e-07 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 53.34 E-value: 3.18e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222662 313 IVLGSCAELSDSVSGKEVHSYVIRLGLELDIKVCSALIDMYSKCGLLKCAMSLF-----AGIpEKNIVSFNSLILGLGLH 387
Cdd:PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFhemvnAGV-EANVHTFGALIDGCARA 520
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222662 388 GFASTAFEKFTEILEMGLIPDEITFSALLCTCCHSGLLNKGQEIFERMKSEFG-IEPQTEHYVYMVKLMGMAGKLEEAFE 466
Cdd:PLN03218 521 GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHpIDPDHITVGALMKACANAGQVDRAKE 600
|
....*..
gi 15222662 467 FVMSLQK 473
Cdd:PLN03218 601 VYQMIHE 607
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
69-116 |
4.62e-06 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 43.89 E-value: 4.62e-06
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 15222662 69 RSVFLWNSIIRAYAKAHQFTTVLSLFSQILRSDTRPDNFTYACLARGF 116
Cdd:pfam13041 1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
372-421 |
2.01e-05 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 41.97 E-value: 2.01e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 15222662 372 KNIVSFNSLILGLGLHGFASTAFEKFTEILEMGLIPDEITFSALLCTCCH 421
Cdd:pfam13041 1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
|
|
| PLN03218 |
PLN03218 |
maturation of RBCL 1; Provisional |
170-443 |
2.66e-05 |
|
maturation of RBCL 1; Provisional
Pssm-ID: 215636 [Multi-domain] Cd Length: 1060 Bit Score: 47.18 E-value: 2.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222662 170 PDLALWNVMILGYGCCGFWDKGINLFNLMQHRGHQPNCYTMVALTSGLIDPSLLLVAWSVHAFCLKINLDSHSYVGCALV 249
Cdd:PLN03218 470 ADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 549
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222662 250 NMYSRCMCIASAcsvFNSISE---------PDLVACSSLITGYSRCGNHKEALHLFAELRMSGKK--PDCVlvAIVLGSC 318
Cdd:PLN03218 550 SACGQSGAVDRA---FDVLAEmkaethpidPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKgtPEVY--TIAVNSC 624
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222662 319 AELSDSVSGKEVHSYVIRLGLELDIKVCSALIDMYSKCGLLKCAMSLFA-----GIPeKNIVSFNSL------------- 380
Cdd:PLN03218 625 SQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQdarkqGIK-LGTVSYSSLmgacsnaknwkka 703
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222662 381 ------ILGLGLHGFAST----------------AFEKFTEILEMGLIPDEITFSALLCTCCHSGLLNKGQEIFERMKSE 438
Cdd:PLN03218 704 lelyedIKSIKLRPTVSTmnalitalcegnqlpkALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED 783
|
....*
gi 15222662 439 fGIEP 443
Cdd:PLN03218 784 -GIKP 787
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
170-217 |
3.82e-05 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 41.19 E-value: 3.82e-05
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 15222662 170 PDLALWNVMILGYGCCGFWDKGINLFNLMQHRGHQPNCYTMVALTSGL 217
Cdd:pfam13041 1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
|
|
| PPR_2 |
pfam13041 |
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ... |
271-309 |
4.93e-05 |
|
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.
Pssm-ID: 463778 [Multi-domain] Cd Length: 50 Bit Score: 40.81 E-value: 4.93e-05
10 20 30
....*....|....*....|....*....|....*....
gi 15222662 271 PDLVACSSLITGYSRCGNHKEALHLFAELRMSGKKPDCV 309
Cdd:pfam13041 1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVY 39
|
|
| PPR |
TIGR00756 |
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ... |
274-308 |
7.68e-04 |
|
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Pssm-ID: 273253 [Multi-domain] Cd Length: 35 Bit Score: 37.05 E-value: 7.68e-04
10 20 30
....*....|....*....|....*....|....*
gi 15222662 274 VACSSLITGYSRCGNHKEALHLFAELRMSGKKPDC 308
Cdd:TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
|
| PPR_1 |
pfam12854 |
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ... |
403-436 |
8.05e-04 |
|
PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.
Pssm-ID: 403914 [Multi-domain] Cd Length: 34 Bit Score: 36.94 E-value: 8.05e-04
10 20 30
....*....|....*....|....*....|....
gi 15222662 403 MGLIPDEITFSALLCTCCHSGLLNKGQEIFERMK 436
Cdd:pfam12854 1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
|
|
| PPR |
TIGR00756 |
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ... |
175-207 |
9.26e-04 |
|
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Pssm-ID: 273253 [Multi-domain] Cd Length: 35 Bit Score: 37.05 E-value: 9.26e-04
10 20 30
....*....|....*....|....*....|...
gi 15222662 175 WNVMILGYGCCGFWDKGINLFNLMQHRGHQPNC 207
Cdd:TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
|
| PPR |
pfam01535 |
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ... |
274-303 |
4.16e-03 |
|
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.
Pssm-ID: 366695 [Multi-domain] Cd Length: 31 Bit Score: 34.75 E-value: 4.16e-03
10 20 30
....*....|....*....|....*....|
gi 15222662 274 VACSSLITGYSRCGNHKEALHLFAELRMSG 303
Cdd:pfam01535 1 VTYNSLISGYCKNGKLEEALELFKEMKEKG 30
|
|
| PPR |
pfam01535 |
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ... |
175-203 |
4.41e-03 |
|
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.
Pssm-ID: 366695 [Multi-domain] Cd Length: 31 Bit Score: 34.75 E-value: 4.41e-03
10 20
....*....|....*....|....*....
gi 15222662 175 WNVMILGYGCCGFWDKGINLFNLMQHRGH 203
Cdd:pfam01535 3 YNSLISGYCKNGKLEEALELFKEMKEKGI 31
|
|
| PPR_3 |
pfam13812 |
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ... |
270-318 |
7.89e-03 |
|
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.
Pssm-ID: 316342 [Multi-domain] Cd Length: 63 Bit Score: 35.03 E-value: 7.89e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 15222662 270 EPDLVACSSLITGYSRCGNHKEALHLFAELRMSGKKPDCVLVAIVLGSC 318
Cdd:pfam13812 12 QLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVI 60
|
|
| |
