|
Name |
Accession |
Description |
Interval |
E-value |
| NT-C2 |
pfam10358 |
N-terminal C2 in EEIG1 and EHBP1 proteins; This version of the C2 domain was initally ... |
11-148 |
9.13e-21 |
|
N-terminal C2 in EEIG1 and EHBP1 proteins; This version of the C2 domain was initally identified in the vertebrate estrogen early-induced gene 1 (EEIG1), and its Drosophila ortholog required for uptake of dsRNA via the endocytotic machinery to induce RNAi silencing. It is also in C.elegans ortholog Sym-3 (SYnthetic lethal with Mec-3) and the mammalian protein EHBP1 (EH domain Binding Protein-1) that regulates endocytotic recycling and two plant proteins, RPG that regulates Rhizobium-directed polar growth and PMI1 (Plastid Movement Impaired 1) that is essential for intracellular movement of chloroplasts in response to blue light.
Pssm-ID: 463058 Cd Length: 143 Bit Score: 89.69 E-value: 9.13e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 11 KNRIKVVFRLKFHATQASQFNTEGLILSLVPGDIGKPTARSEKAIVNDGHCRWEIPVYETVKFLKDVKTGKVNQRIYHLI 90
Cdd:pfam10358 2 KRKPKFQFVLTIHELQNLPLVGGELFVKWRRGDKKGSSGTTEKALVNNGRAIFNEEFSIPVTLFLDKKGGKYEEKLLEFS 81
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15221736 91 V-STTGSARGGLVGETSIDFADYVD--ATKTCNVSLPLQNSSSKALLHVSIQRQLEFDDPQ 148
Cdd:pfam10358 82 VyKVTKKGKKKVLGKASIDLAEYANlkKKPTTVRFLLKKSSKKNATLSLSIQVLPLGEDPN 142
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
287-1016 |
5.72e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 86.65 E-value: 5.72e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 287 EDEVEKLKNELVGLTRQADLSELELQSLRKQIVKETKRSQDLLREVNSLKQERDSLKEDCERQKVSDKQkgetktrnrlq 366
Cdd:TIGR02168 245 QEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLAN----------- 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 367 fegrdpwvlLEETREELDYEKDRNFNLRLQLEKTQESNSELILAVQDLEEMLEEKSKEGADNIEESMRRScrsetdedDH 446
Cdd:TIGR02168 314 ---------LERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRL--------EE 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 447 DQKALEDLVKKHVDakdthiLEQKITDLYNEIEiykrdkdELEIQMEQLALDYEILKQQNHDISYKLEQSQLQEqlkIQY 526
Cdd:TIGR02168 377 LEEQLETLRSKVAQ------LELQIASLNNEIE-------RLEARLERLEDRRERLQQEIEELLKKLEEAELKE---LQA 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 527 ECSSSLVDVTELENQVESLEAELKKQSEEFSESLCRIKELESQMETLEEEMEKQAQVFEadidavtrgKVEQEQRAIQAe 606
Cdd:TIGR02168 441 ELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQE---------NLEGFSEGVKA- 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 607 etLRKTRWKNASVAGKLQDEFK-----------RLSEQMDSMFTSNEKMAMKAMTEANELRMQKRQLEEMIKDANDELRA 675
Cdd:TIGR02168 511 --LLKNQSGLSGILGVLSELISvdegyeaaieaALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQG 588
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 676 NQAEYEAK-------LHELSEKLSFKTSQMERML------ENLDEkSNEIDNQKRHEE---------------------- 720
Cdd:TIGR02168 589 NDREILKNiegflgvAKDLVKFDPKLRKALSYLLggvlvvDDLDN-ALELAKKLRPGYrivtldgdlvrpggvitggsak 667
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 721 --DVTANLNQEIKILKEEIEnlkknqdslmLQAEQAENLRVDLEKTKKSVMEAEASLQRENMKKIELESKISLMRKESES 798
Cdd:TIGR02168 668 tnSSILERRREIEELEEKIE----------ELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLAR 737
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 799 LAAELQVIKLAKDEKETAISLLQTELETVRSQCDDLKHSLSENDLEMEKHKKQVAHVKSELKKKEETMANLEKKLKESRT 878
Cdd:TIGR02168 738 LEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNE 817
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 879 AITKTAQRNNINKgspvgahggsKEVAVMKDKIKLLEGQIK-LKETALESSSNMFiekekNLKNRIEELETKLDQNSQEM 957
Cdd:TIGR02168 818 EAANLRERLESLE----------RRIAATERRLEDLEEQIEeLSEDIESLAAEIE-----ELEELIEELESELEALLNER 882
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*....
gi 15221736 958 SENELLNGQENEDIGVLVAEIESLRECNGSMEMELKEMRERYSEISLRFAEVEGERQQL 1016
Cdd:TIGR02168 883 ASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNL 941
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
308-1010 |
4.96e-13 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 73.61 E-value: 4.96e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 308 ELELQSLRKQIVKETKRSQDLLREVNSlKQERDSLKEDCERQKVSDKQKgetktrnrlqFEGRDPWVLLEETREELDYEK 387
Cdd:pfam15921 58 EVELDSPRKIIAYPGKEHIERVLEEYS-HQVKDLQRRLNESNELHEKQK----------FYLRQSVIDLQTKLQEMQMER 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 388 DRNFNLRLQLEKTQES-NSELILAVQDLE--EMLEEKSKEGADNIEESMRRSCRSETDEDDHDQKALEDL-------VKK 457
Cdd:pfam15921 127 DAMADIRRRESQSQEDlRNQLQNTVHELEaaKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFeeasgkkIYE 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 458 HVDAKDTHI------LEQKITDLYNEIEIYKRDKDELEIQMEQLALD----YEILKQQNHDISYKLEQSQLQEQLKIQYE 527
Cdd:pfam15921 207 HDSMSTMHFrslgsaISKILRELDTEISYLKGRIFPVEDQLEALKSEsqnkIELLLQQHQDRIEQLISEHEVEITGLTEK 286
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 528 CSSSLVDVTELENQVESLEAELKKQSEEFsesLCRIKELESQMETLEEEMEKQAQVFEADIDAVTRGKVEQEQRAIQAee 607
Cdd:pfam15921 287 ASSARSQANSIQSQLEIIQEQARNQNSMY---MRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEA-- 361
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 608 tlRKTRWKNASVAGKLQDEFKRL--------------SEQMDSMF---TSNEKMAMKAMTEANELRMQKRQLEEMIKDAN 670
Cdd:pfam15921 362 --RTERDQFSQESGNLDDQLQKLladlhkrekelsleKEQNKRLWdrdTGNSITIDHLRRELDDRNMEVQRLEALLKAMK 439
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 671 DELRANQAEYEAKL---HELSEKLSFKTSQME-------RMLENLDEKSNEIDNQKRHEEDVTANL----------NQEI 730
Cdd:pfam15921 440 SECQGQMERQMAAIqgkNESLEKVSSLTAQLEstkemlrKVVEELTAKKMTLESSERTVSDLTASLqekeraieatNAEI 519
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 731 KILK-------EEIENLKKNQDSLmlQAEQAENLRVDLEKTKKSVMEAEASLQRENMKKI---------ELESKISLMRK 794
Cdd:pfam15921 520 TKLRsrvdlklQELQHLKNEGDHL--RNVQTECEALKLQMAEKDKVIEILRQQIENMTQLvgqhgrtagAMQVEKAQLEK 597
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 795 ESESLAAELQVIKLAKDEKETAISLLQT-----ELETV----------------RSQCDDLKHSLSENDLEMEKHKKQVA 853
Cdd:pfam15921 598 EINDRRLELQEFKILKDKKDAKIRELEArvsdlELEKVklvnagserlravkdiKQERDQLLNEVKTSRNELNSLSEDYE 677
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 854 HVKSELKKKEETMANLEKKLK-ESRTAITKTAQRNNINKgSPVGAHGGSKEVAV-MKDKIKLLEGQIKlketALESSSNM 931
Cdd:pfam15921 678 VLKRNFRNKSEEMETTTNKLKmQLKSAQSELEQTRNTLK-SMEGSDGHAMKVAMgMQKQITAKRGQID----ALQSKIQF 752
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15221736 932 FIEKEKNLKNRIEELETKLDQNSQEMSENELLNGQENEDIGVLVAEIESLRECNGSMEMELkemrerySEISLRFAEVE 1010
Cdd:pfam15921 753 LEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVAL-------DKASLQFAECQ 824
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
287-1029 |
4.99e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 73.56 E-value: 4.99e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 287 EDEVEKLKNELVGLTRQADLSELELQSLRKQIVKETKRSQDLLREVNSLKQERDSLKEdcerqKVSDKQKGETktrNRLQ 366
Cdd:TIGR02169 222 EYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNK-----KIKDLGEEEQ---LRVK 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 367 FEGRDPWVLLEETREELDYEKDRNFNLRLQLEKTQESNSELILAVQDLEEMLEEKSKEGADNIEEsmrrsCRSETDEDDH 446
Cdd:TIGR02169 294 EKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEE-----YAELKEELED 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 447 DQKALEDLVKKHVDAKDTHI-LEQKITDLYNEIEIYKRDKDELEIQMEQLALDYEILKQQNHDISYKLEQSQ-----LQE 520
Cdd:TIGR02169 369 LRAELEEVDKEFAETRDELKdYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEeekedKAL 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 521 QLKIQYECSSSLV-DVTELENQVESLEAELKKQSEEFSESLCRIKELESQMETLEEEME---KQAQVFEADIDAV----- 591
Cdd:TIGR02169 449 EIKKQEWKLEQLAaDLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRggrAVEEVLKASIQGVhgtva 528
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 592 TRGKV-EQEQRAIQ-----------------AEETLRKTRWKNASVA-----GKLQDEFKRLS----------------- 631
Cdd:TIGR02169 529 QLGSVgERYATAIEvaagnrlnnvvveddavAKEAIELLKRRKAGRAtflplNKMRDERRDLSilsedgvigfavdlvef 608
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 632 ------------------EQMDS---------MFT-----------------SNEKMAMKAMTEANELRMQKRQLEEMIK 667
Cdd:TIGR02169 609 dpkyepafkyvfgdtlvvEDIEAarrlmgkyrMVTlegelfeksgamtggsrAPRGGILFSRSEPAELQRLRERLEGLKR 688
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 668 DANDeLRANQAEYEAKLHELSEKLSfktsQMERMLENLDEKSNEIDNQKRHEEDVTANLNQEIKILKEEIENLKKNQDSL 747
Cdd:TIGR02169 689 ELSS-LQSELRRIENRLDELSQELS----DASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKEL 763
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 748 mlqAEQAENLRVDLEKTKKSVMEAEASLQRENMKKIELEskISLMRKESESLAAELQVIKLAKDEKETAISLLQTELETV 827
Cdd:TIGR02169 764 ---EARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAE--LSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQEL 838
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 828 RSQCDDLKHSLSENDLEMEKHKKQVAHVKSELKKKEETMANLEKKLKESRtaitktAQRNNINkgspvgahggsKEVAVM 907
Cdd:TIGR02169 839 QEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLK------KERDELE-----------AQLREL 901
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 908 KDKIKLLEGQIKLKETALESSSnmfiEKEKNLKNRIEELETKLDQNsQEMSENELLNGQENEDIGVLVAEIESLRECNGS 987
Cdd:TIGR02169 902 ERKIEELEAQIEKKRKRLSELK----AKLEALEEELSEIEDPKGED-EEIPEEELSLEDVQAELQRVEEEIRALEPVNML 976
|
810 820 830 840
....*....|....*....|....*....|....*....|..
gi 15221736 988 MEMELKEMRERYSEISLRFAEVEGERQQLVMIVRNLKNAKRS 1029
Cdd:TIGR02169 977 AIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKRE 1018
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
715-1016 |
1.46e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 72.01 E-value: 1.46e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 715 QKRHE-----EDVTANLNQEIKILKEeienLKKNQDSLMLQAEQAE---NLRVDLEKTKKSVmeAEASLQRENMKKIELE 786
Cdd:TIGR02168 172 ERRKEterklERTRENLDRLEDILNE----LERQLKSLERQAEKAErykELKAELRELELAL--LVLRLEELREELEELQ 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 787 SKISLMRKESESLAAELQVIKLAKDEKETAISLLQTELETVRSQCDDLKHSLSENDLEMEKHKKQVAHVKSELKKKEETM 866
Cdd:TIGR02168 246 EELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQL 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 867 ANLEKKLKESRTAITKTAQRNNINKGSPVGAhggSKEVAVMKDKIKLLEGQIKLKETALESSSNMFIEKEK--------- 937
Cdd:TIGR02168 326 EELESKLDELAEELAELEEKLEELKEELESL---EAELEELEAELEELESRLEELEEQLETLRSKVAQLELqiaslnnei 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 938 -NLKNRIEELETKLDQNSQEMSEN--ELLNGQENE---DIGVLVAEIESLRECNGSMEMELKEMRERYSEISLRFAEVEG 1011
Cdd:TIGR02168 403 eRLEARLERLEDRRERLQQEIEELlkKLEEAELKElqaELEELEEELEELQEELERLEEALEELREELEEAEQALDAAER 482
|
....*
gi 15221736 1012 ERQQL 1016
Cdd:TIGR02168 483 ELAQL 487
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
471-801 |
4.46e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 70.35 E-value: 4.46e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 471 ITDLYNEIEiykRDKDELEIQMEQlALDYEILKQQnhdisykLEQSQLQEQLKIQYECSSSLvdvTELENQVESLEAELK 550
Cdd:COG1196 191 LEDILGELE---RQLEPLERQAEK-AERYRELKEE-------LKELEAELLLLKLRELEAEL---EELEAELEELEAELE 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 551 KQSEEFSESLCRIKELESQMETLEEEME-KQAQVFE--ADIDAVTRGKVEQEQRAIQAEETLRKTRWKNASVAGKLQDEF 627
Cdd:COG1196 257 ELEAELAELEAELEELRLELEELELELEeAQAEEYEllAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELE 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 628 KRLSEQMDSMFTSNEKMAMKAMTEANELRMQKRQLEEMIkDANDELRANQAEYEAKLHELSEKLSfKTSQMERMLENLDE 707
Cdd:COG1196 337 EELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELA-EAEEELEELAEELLEALRAAAELAA-QLEELEEAEEALLE 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 708 KSNEIDNQKRHEEDVTANLNQEIKILKEEIENLKKNQDSLMLQAEQAENLRVDLEKTKKSVMEAEASLQRENMKKIELES 787
Cdd:COG1196 415 RLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLL 494
|
330
....*....|....
gi 15221736 788 KISLMRKESESLAA 801
Cdd:COG1196 495 LLLEAEADYEGFLE 508
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
376-1028 |
6.56e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.09 E-value: 6.56e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 376 LEETREELDYEKDRNFNLRLQLE---------------KTQESNSELILAVQDLEEMLEEKSKegADNIEESMRRSCRSE 440
Cdd:TIGR02168 181 LERTRENLDRLEDILNELERQLKslerqaekaerykelKAELRELELALLVLRLEELREELEE--LQEELKEAEEELEEL 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 441 TDEDDHDQKALEDLVKKHVDAKDT--------HILEQKITDLYNEIEIYKRDKDELEIQMEQLalDYEILKQQNHDISYK 512
Cdd:TIGR02168 259 TAELQELEEKLEELRLEVSELEEEieelqkelYALANEISRLEQQKQILRERLANLERQLEEL--EAQLEELESKLDELA 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 513 LEQSQLQEQLkiqyecssslvdvTELENQVESLEAELKKQSEEFSESLCRIKELESQMETLEE---EMEKQAQVFEADId 589
Cdd:TIGR02168 337 EELAELEEKL-------------EELKEELESLEAELEELEAELEELESRLEELEEQLETLRSkvaQLELQIASLNNEI- 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 590 avtrgkVEQEQRAIQAEETLRKTRWKNASVAGKLQD-EFKRLSEQMDSMftsnekmamkaMTEANELRMQKRQLEEMIKD 668
Cdd:TIGR02168 403 ------ERLEARLERLEDRRERLQQEIEELLKKLEEaELKELQAELEEL-----------EEELEELQEELERLEEALEE 465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 669 ANDELRANQAEYEAKLHELSEKLSFKTSqMERMLENLDEKSNEIDNQKRHEEDVTANLNQEIKIL--------------- 733
Cdd:TIGR02168 466 LREELEEAEQALDAAERELAQLQARLDS-LERLQENLEGFSEGVKALLKNQSGLSGILGVLSELIsvdegyeaaieaalg 544
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 734 --------------KEEIENLKKN---------------QDSLMLQAEQAENLR------VDLEKTKKSVMEAEASL--- 775
Cdd:TIGR02168 545 grlqavvvenlnaaKKAIAFLKQNelgrvtflpldsikgTEIQGNDREILKNIEgflgvaKDLVKFDPKLRKALSYLlgg 624
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 776 ------------QRENMKKIEL----------------------ESKISLMRKESESLAAELQVIKLAKDEKETAISLLQ 821
Cdd:TIGR02168 625 vlvvddldnaleLAKKLRPGYRivtldgdlvrpggvitggsaktNSSILERRREIEELEEKIEELEEKIAELEKALAELR 704
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 822 TELETVRSQCDDLKHSLSENDLEMEKHKKQVAHVKSELKKKEETMANLEKKLKESRTAITKTAQRNNINkgspvgahggS 901
Cdd:TIGR02168 705 KELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEA----------E 774
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 902 KEVAVMKDKIKLLEGQIKLKETALESSSNMFIEKEK----------NLKNRIEELETKLDQNSQEMSENELLNGQENEDI 971
Cdd:TIGR02168 775 EELAEAEAEIEELEAQIEQLKEELKALREALDELRAeltllneeaaNLRERLESLERRIAATERRLEDLEEQIEELSEDI 854
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*..
gi 15221736 972 GVLVAEIESLRECNGSMEMELKEMRERYSEISLRFAEVEGERQQLVMIVRNLKNAKR 1028
Cdd:TIGR02168 855 ESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRS 911
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
311-886 |
1.13e-11 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 68.91 E-value: 1.13e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 311 LQSLRKQIvkETKRSQDLLREVNSLKQERDSLKEDCERQKVSDKQKGETKTRNRLQFEGRdpwvllEETREELDYEKDRN 390
Cdd:PRK02224 189 LDQLKAQI--EEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEH------EERREELETLEAEI 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 391 FNLRLQLEKTQESNSELILAVQDLEEMLEEKSKEgadnieesmRRSCRSETDEDDHDQKALEDLvKKHVDAKDTHILE-- 468
Cdd:PRK02224 261 EDLRETIAETEREREELAEEVRDLRERLEELEEE---------RDDLLAEAGLDDADAEAVEAR-REELEDRDEELRDrl 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 469 ----QKITDLYNEIEIYKRDKDELEIQMEQLALDYEILKQQNHDISYKLEQSQlQEQLKIQYECSSSLVDVTELENQVES 544
Cdd:PRK02224 331 eecrVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRR-EEIEELEEEIEELRERFGDAPVDLGN 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 545 LEAELKKQSEEFSESLCRIKELESQMETLEEEMEKQAQVFEA-------------------DIDAVTRGKVEQEQRAIQA 605
Cdd:PRK02224 410 AEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAgkcpecgqpvegsphvetiEEDRERVEELEAELEDLEE 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 606 EETLRKTRWKNASVAGKLQDEFKRLSEQMDSmftsnekmamkamteANELRMQKRQLEEMIKDANDELRANQAEYEAKLH 685
Cdd:PRK02224 490 EVEEVEERLERAEDLVEAEDRIERLEERRED---------------LEELIAERRETIEEKRERAEELRERAAELEAEAE 554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 686 ELSEKLSFKTSQMERMLEnldeksneidnqkrheedVTANLNQEIKILKEEIENLKKNQDSLMLQAE---QAENLRVDLE 762
Cdd:PRK02224 555 EKREAAAEAEEEAEEARE------------------EVAELNSKLAELKERIESLERIRTLLAAIADaedEIERLREKRE 616
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 763 KTKKSVMEAEASLQRENMKKIELESKISlmrkeseslAAELQVIKLAKDEKETAISLLQTELETVRSQCDDLkhslsend 842
Cdd:PRK02224 617 ALAELNDERRERLAEKRERKRELEAEFD---------EARIEEAREDKERAEEYLEQVEEKLDELREERDDL-------- 679
|
570 580 590 600
....*....|....*....|....*....|....*....|....
gi 15221736 843 lemekhKKQVAHVKSELKKKEEtmanlekkLKESRTAITKTAQR 886
Cdd:PRK02224 680 ------QAEIGAVENELEELEE--------LRERREALENRVEA 709
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
467-753 |
6.01e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.00 E-value: 6.01e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 467 LEQKITDLYNEIEIYKRDKDELEIQMEQLALDYEILKQQNHDISYKLEQSQlQEQLKIQYECSSSLVDVTELENQVESLE 546
Cdd:TIGR02168 689 LEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLE-AEVEQLEERIAQLSKELTELEAEIEELE 767
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 547 AELKKQSEEFSESLCRIKELESQMETLEEEM--------EKQAQVFEADIDA-VTRGKVEQEQRAIQAEETLRKTRWKNa 617
Cdd:TIGR02168 768 ERLEEAEEELAEAEAEIEELEAQIEQLKEELkalrealdELRAELTLLNEEAaNLRERLESLERRIAATERRLEDLEEQ- 846
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 618 svAGKLQDEFKRLSEQMDSMFTSNEKMAmKAMTEANELRMQKRQLEEMIKDANDELRANQAEYEAKLHELSEKLSFKTSQ 697
Cdd:TIGR02168 847 --IEELSEDIESLAAEIEELEELIEELE-SELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREK 923
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 15221736 698 MERMLENLDEKSNEIDNQKrheedvtANLNQEIKILKEEIENLKKNQDSLMLQAEQ 753
Cdd:TIGR02168 924 LAQLELRLEGLEVRIDNLQ-------ERLSEEYSLTLEEAEALENKIEDDEEEARR 972
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
378-870 |
1.20e-10 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 65.91 E-value: 1.20e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 378 ETREELDYEKDRNFN--LRLQLEKTQESNSELILAVQDLEEMLEEKSKEGADNI--EESMRRSCRSETDE--------DD 445
Cdd:pfam15921 298 QSQLEIIQEQARNQNsmYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLvlANSELTEARTERDQfsqesgnlDD 377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 446 HDQKALEDLVKKHVDAKDTHILEQKI--TDLYNEIEI--YKRDKDELEIQMEQLALDYEILKQQNhdisykleQSQLQEQ 521
Cdd:pfam15921 378 QLQKLLADLHKREKELSLEKEQNKRLwdRDTGNSITIdhLRRELDDRNMEVQRLEALLKAMKSEC--------QGQMERQ 449
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 522 LKIQYECSSSLVDVTELENQVESLEAELKKQSEEFSESLCRIKELESQMETLEEEMEKQAQVFEADIDAVTRG------K 595
Cdd:pfam15921 450 MAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLrsrvdlK 529
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 596 VEQEQRAIQAEETLRKTRWKNASVAGKLQDEFKR---LSEQMDSMFtsneKMAMKAMTEANELRMQKRQLEEMIKDANDE 672
Cdd:pfam15921 530 LQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVieiLRQQIENMT----QLVGQHGRTAGAMQVEKAQLEKEINDRRLE 605
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 673 LR----------ANQAEYEAKLHELS-EKLSFKTSQMERM--LENLDEKSNEIDNQKRHEEDVTANLNQEIKILKEEIEN 739
Cdd:pfam15921 606 LQefkilkdkkdAKIRELEARVSDLElEKVKLVNAGSERLraVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRN 685
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 740 -----------LKKNQDSLMLQAEQAENLRVDLEKTKKSVMEAEASLQRENMKKI----ELESKISLMRKESESLAAELQ 804
Cdd:pfam15921 686 kseemetttnkLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRgqidALQSKIQFLEEAMTNANKEKH 765
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15221736 805 VIKLAKDEKETAISLLQTE-------LETVRSQCDDLKHSLSENDLEMEKHKKQVAHVKSELKKKEETMANLE 870
Cdd:pfam15921 766 FLKEEKNKLSQELSTVATEknkmageLEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQESVRLK 838
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
448-997 |
2.17e-10 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 65.46 E-value: 2.17e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 448 QKALEDLVKKHVDA-KDTHILEQKITDLYNEIEIYKrdKDELEIQMEQLAL-DYEilKQQNHDISY---------KLEQS 516
Cdd:TIGR01612 940 QNILKEILNKNIDTiKESNLIEKSYKDKFDNTLIDK--INELDKAFKDASLnDYE--AKNNELIKYfndlkanlgKNKEN 1015
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 517 QLQEQLKIQYECSSSLVDVTELENQ-VESLEAELKKQSEEFSESLcrIKELESQMETLEEEMEKqaqvfEADIDAVTRGK 595
Cdd:TIGR01612 1016 MLYHQFDEKEKATNDIEQKIEDANKnIPNIEIAIHTSIYNIIDEI--EKEIGKNIELLNKEILE-----EAEINITNFNE 1088
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 596 VEQEQRAIQAEETLRKTRWKNASVAGKLQDEFKRLSEQMDSMFTSNEKMAMKAMTEANELRMQKRQLEEMIKDA--NDel 673
Cdd:TIGR01612 1089 IKEKLKHYNFDDFGKEENIKYADEINKIKDDIKNLDQKIDHHIKALEEIKKKSENYIDEIKAQINDLEDVADKAisND-- 1166
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 674 raNQAEYEAKLHELSEKLSFKTSQMERMLENLDEKSnEIDNQKRHEEDVTaNLNQEI-----KILKEEIENLKKNQDSLM 748
Cdd:TIGR01612 1167 --DPEEIEKKIENIVTKIDKKKNIYDEIKKLLNEIA-EIEKDKTSLEEVK-GINLSYgknlgKLFLEKIDEEKKKSEHMI 1242
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 749 lqaEQAENLRVDLEKTKKSVMEAEASLQRENMKKIELESKISLMRKESESLAAELQVIKLAKDEKETAISLLQTELEtvR 828
Cdd:TIGR01612 1243 ---KAMEAYIEDLDEIKEKSPEIENEMGIEMDIKAEMETFNISHDDDKDHHIISKKHDENISDIREKSLKIIEDFSE--E 1317
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 829 SQCDDLKHSLSENDLEMEKHKKQVAHVKSELKK-----KEETMANLEKKLKEsrtaITKTAQRNNINKGSPVGahGGSKE 903
Cdd:TIGR01612 1318 SDINDIKKELQKNLLDAQKHNSDINLYLNEIANiynilKLNKIKKIIDEVKE----YTKEIEENNKNIKDELD--KSEKL 1391
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 904 VAVMKDKIKLLEGQIKLKETALESSSNMFIEKEKNLKNRIEELETKLD---QNSQEMSENELLNGQENEDIGVLVAEIES 980
Cdd:TIGR01612 1392 IKKIKDDINLEECKSKIESTLDDKDIDECIKKIKELKNHILSEESNIDtyfKNADENNENVLLLFKNIEMADNKSQHILK 1471
|
570
....*....|....*....
gi 15221736 981 LRECNGSMEME--LKEMRE 997
Cdd:TIGR01612 1472 IKKDNATNDHDfnINELKE 1490
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
286-829 |
3.87e-10 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 63.89 E-value: 3.87e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 286 DEDEVEKLKNELVGLTRQADLSELELQSLRKQIVKETKRSQDLLREVNSLKQERDSLKEDCERQKVSDKQKGETKTRNRl 365
Cdd:TIGR04523 150 KEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNN- 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 366 qfegrdpwvlleETREELDYEKDRNFNLRLQLEKTQESNSELILAVQDLEEMLEEKSKEGADN---IEESMRRSCRSETD 442
Cdd:TIGR04523 229 ------------QLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNnkkIKELEKQLNQLKSE 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 443 EDDHDQKALEDLVKKHvdAKDTHILEQKITDLYNEIEIYKRDKDELEIQMEQLALDYEILKQQNHDISYKLEQSQlQEQL 522
Cdd:TIGR04523 297 ISDLNNQKEQDWNKEL--KSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQ-NEIE 373
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 523 KIQYECSSSLVDVTELENQVESLEAELKKQSEEFSESLCRIKELESQMETLEEEMEKQAQVFEADIDAVTRGKVEQEQRA 602
Cdd:TIGR04523 374 KLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKE 453
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 603 IQAEETLRKTRWKNASVagklqDEFKRLSEQMDSMFTSNEKMAMKAMTEANELRMQKRQLEEMIKDANDELranqaeyeA 682
Cdd:TIGR04523 454 LIIKNLDNTRESLETQL-----KVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKI--------S 520
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 683 KLHELSEKLSFKTSQMERMLENLDEKSNEIDNQKRHE--EDVTANLNQEIKILKEEIENLKKNQDSLMLQAEQAENLRVD 760
Cdd:TIGR04523 521 SLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKEnlEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKD 600
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15221736 761 LEKtkksvmeaeaSLQRENMKKIELESKISLMRKESESLAAELQVIKLAKDEKETAISLLQTELETVRS 829
Cdd:TIGR04523 601 LIK----------EIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRN 659
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
467-1023 |
5.84e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.42 E-value: 5.84e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 467 LEQKITDLYNEIEIYKRDKDELEIQMEQLALDYEILKQQNHDISYKLEQSQLQEQlkiqyecssslvdvtELENQVESLE 546
Cdd:COG1196 237 LEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEY---------------ELLAELARLE 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 547 AELKKQSEefseslcRIKELESQMETLEEEMEKQaqvfEADIDAVTRGKVEQEQRAIQAEETLRKTRWKNASVAGKLQDE 626
Cdd:COG1196 302 QDIARLEE-------RRRELEERLEELEEELAEL----EEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEA 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 627 FKRLSEQMDSMFTSNEKmAMKAMTEANELRMQKRQLEEMIKDANDELRANQAEYEAKLHELSEKLSfKTSQMERMLENLD 706
Cdd:COG1196 371 EAELAEAEEELEELAEE-LLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEE-EEEEEEEALEEAA 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 707 EKSNEIDNQKRHEEDVTANLNQEIKILKEEIENLKKNQDSLMLQAEQAENLRVDLEKTKKSVME---------------- 770
Cdd:COG1196 449 EEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAalllaglrglagavav 528
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 771 ---------------AEASLQRENMKKIE-LESKISLMRKESESLAAELQVIKLAKDEKETAISLLQTELETVRSQCDDL 834
Cdd:COG1196 529 ligveaayeaaleaaLAAALQNIVVEDDEvAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDL 608
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 835 KH---------------SLSENDLEMEKHKKQVAHVKSELKKKEETMANLEKKLKESRTAITKTAQRNNINKGSPVGAHG 899
Cdd:COG1196 609 REadaryyvlgdtllgrTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERL 688
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 900 GSKEVAVMKDKIKLLEGQIKLKET--ALESSSNMFIEKEKNLKNRIEELETKLDQNSQEMSENELLNGQENEDIGVLVAE 977
Cdd:COG1196 689 AEEELELEEALLAEEEEERELAEAeeERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERE 768
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|...
gi 15221736 978 IESLRECNGSM-------EMELKEMRERYSEISLRFAEVEGERQQLVMIVRNL 1023
Cdd:COG1196 769 LERLEREIEALgpvnllaIEEYEELEERYDFLSEQREDLEEARETLEEAIEEI 821
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
466-1025 |
7.28e-10 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 63.12 E-value: 7.28e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 466 ILEQKITDLYNEIEIYKRDKDELEIQMEQLALDYEILKQQNHDIsyKLEQSQLQEQLKIQYEcssslvDVTELENQVESL 545
Cdd:TIGR04523 79 ILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKL--EVELNKLEKQKKENKK------NIDKFLTEIKKK 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 546 EAELKKQSEEFSESLCRIKELESQMETLEEEMEKQaqvfEADIDAVTRGKVEQE------QRAIQAEETLRKTRWKNASV 619
Cdd:TIGR04523 151 EKELEKLNNKYNDLKKQKEELENELNLLEKEKLNI----QKNIDKIKNKLLKLElllsnlKKKIQKNKSLESQISELKKQ 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 620 AGKLQDEFKRLSEQMDSMFTSNEKMAMKAMTEANELRMQKRQLEEMIKDAN------DELRANQAEYEAKLHEL-SEKLS 692
Cdd:TIGR04523 227 NNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEqnnkkiKELEKQLNQLKSEISDLnNQKEQ 306
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 693 FKTSQMERMLENLDEKSNEIDNQKRHEEDVTANLNQEIKILKEEIENLKKNQDSLMLQAEQAENLRVDLEKTKKSVMEae 772
Cdd:TIGR04523 307 DWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQ-- 384
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 773 aSLQRENMKKIELESKISLMRKESESLAAELQVIKLAKDEKETAISLLQTELETVRSQCDDLKHSLSENDLEMEKHKKQV 852
Cdd:TIGR04523 385 -EIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTR 463
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 853 AHVKSELKKKE----ETMANLEKKLKESRTAITKTAQRNNINKGSPVGAHGGSKEVAVMKDKIKLLEGQIKLKETALESS 928
Cdd:TIGR04523 464 ESLETQLKVLSrsinKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDL 543
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 929 SNMFIEKEKNLKNriEELETKLDQNSQEMSE-----NELLNGQENEDIGV---------LVAEIESLRECNGSMEMELKE 994
Cdd:TIGR04523 544 EDELNKDDFELKK--ENLEKEIDEKNKEIEElkqtqKSLKKKQEEKQELIdqkekekkdLIKEIEEKEKKISSLEKELEK 621
|
570 580 590
....*....|....*....|....*....|.
gi 15221736 995 MRERYSEISLRFAEVEGERQQLVMIVRNLKN 1025
Cdd:TIGR04523 622 AKKENEKLSSIIKNIKSKKNKLKQEVKQIKE 652
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
287-871 |
2.69e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.49 E-value: 2.69e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 287 EDEVEKLKNELVGLTRQADLSELELQSLRKQIVKETKRSQDLLREVNSLKQERDSLKEDCERQKVSDKQkgetktrnrlq 366
Cdd:COG1196 245 EAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRE----------- 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 367 fegrdpwvlLEETREELDYEKDRNFNLRLQLEKTQESNSELILAVQDLEEMLEEKSKEGADNIEESMRRSCRSETDEDDH 446
Cdd:COG1196 314 ---------LEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEEL 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 447 DQKALEDLVKKHVDAKDTHILEQKITDLYNEIEIYKRDKDELEIQMEQLALDYEILKQQnhdisyklEQSQLQEQLKIQY 526
Cdd:COG1196 385 AEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEA--------LEEAAEEEAELEE 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 527 ECSSSLVDVTELENQVESLEAELKKQSEEFSESLcriKELESQMETLEEEMEKQAQVFEADIDAVTRGKVEQEQRAIQAE 606
Cdd:COG1196 457 EEEALLELLAELLEEAALLEAALAELLEELAEAA---ARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVE 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 607 ETLRKTRwkNASVAGKLQDEFKRLSEQMDSMFTSNEKMAMKAMTEANELRMQKRQLEEMIKDANDELRA-NQAEYEAKLH 685
Cdd:COG1196 534 AAYEAAL--EAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAvDLVASDLREA 611
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 686 ELSEKLSFKTSQMERMLENLDEKSNEIDNQKRHEEDVTANLNQEIKILKEEIENLKKNQDSLMLQAEQAENLRVDLEKtk 765
Cdd:COG1196 612 DARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLA-- 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 766 ksvmEAEASLQRENMKKIELESKISLMRKESESLAAELQVIKLAKDEKETAISLLQTELEtvrsqcDDLKHSLSENDLEM 845
Cdd:COG1196 690 ----EEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEE------ELLEEEALEELPEP 759
|
570 580
....*....|....*....|....*.
gi 15221736 846 EKHKKQvahvKSELKKKEETMANLEK 871
Cdd:COG1196 760 PDLEEL----ERELERLEREIEALGP 781
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
287-875 |
3.24e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 61.23 E-value: 3.24e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 287 EDEVEKLKNELVGLTRQADLSELELQSLRKQIVKETKRSQDLLREVNSLKQERDSLKEDCERQKVsDKQKGETKTRNRLQ 366
Cdd:TIGR02168 371 ESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAEL-KELQAELEELEEEL 449
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 367 FEGRDPWVLLEETREELDYEKDRNFNLRLQLEKTQESNSELILAVQDLEEMLEEKSKEGADNIEESMRR----------- 435
Cdd:TIGR02168 450 EELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLsgilgvlseli 529
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 436 SCRSE----------------TDEDDHDQKALEDLVKKHVDAKDTHILEQKITDlyNEIEIYKRDKDELEIQMEQLALDY 499
Cdd:TIGR02168 530 SVDEGyeaaieaalggrlqavVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKG--TEIQGNDREILKNIEGFLGVAKDL 607
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 500 -EILKQQNHDISYKLEQS----QLQEQLKIQYECSSSLVDVT-----------------ELENQVESLEAELKKQSEEFS 557
Cdd:TIGR02168 608 vKFDPKLRKALSYLLGGVlvvdDLDNALELAKKLRPGYRIVTldgdlvrpggvitggsaKTNSSILERRREIEELEEKIE 687
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 558 ESLCRIKELESQMETLEEEMEKqaqvFEADIDAVTRGKVEQEQRAIQAEETLRKTRWKNASVAGKLQDEFKRLSEQMDSM 637
Cdd:TIGR02168 688 ELEEKIAELEKALAELRKELEE----LEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEI 763
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 638 fTSNEKMAMKAMTEANELRMQKRQLEEMIKDANDEL---RANQAEYEAKLHELSEKLSFKTSQMERMLENLDEKSNEIDn 714
Cdd:TIGR02168 764 -EELEERLEEAEEELAEAEAEIEELEAQIEQLKEELkalREALDELRAELTLLNEEAANLRERLESLERRIAATERRLE- 841
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 715 qkrheedvtaNLNQEIKILKEEIENLKKNQDSLmlqAEQAENLRVDLEKTKKSVMEAEASLQRENMKKIELESKISLMRK 794
Cdd:TIGR02168 842 ----------DLEEQIEELSEDIESLAAEIEEL---EELIEELESELEALLNERASLEEALALLRSELEELSEELRELES 908
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 795 ESESLAAELQviklakdEKETAISLLQTELETVRSQCDDLKHSLSEN-DLEMEKHKKQVAHVKSELKKKEETMANLEKKL 873
Cdd:TIGR02168 909 KRSELRRELE-------ELREKLAQLELRLEGLEVRIDNLQERLSEEySLTLEEAEALENKIEDDEEEARRRLKRLENKI 981
|
..
gi 15221736 874 KE 875
Cdd:TIGR02168 982 KE 983
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
411-1025 |
5.33e-09 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 60.52 E-value: 5.33e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 411 VQDLEEMLEEkSKEGADNIEESMRRSC---RSETDEDDHDQKALEDLVKKHVDAKDThiLEQKITDLYNEIEIYKRDKDE 487
Cdd:pfam15921 87 VKDLQRRLNE-SNELHEKQKFYLRQSVidlQTKLQEMQMERDAMADIRRRESQSQED--LRNQLQNTVHELEAAKCLKED 163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 488 L----EIQMEQL---ALDYEILKQQNHDISYKLEQSQLQeqlKIQYECSSSLVDVTELENQVESLEAELkkqSEEFSESL 560
Cdd:pfam15921 164 MledsNTQIEQLrkmMLSHEGVLQEIRSILVDFEEASGK---KIYEHDSMSTMHFRSLGSAISKILREL---DTEISYLK 237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 561 CRIKELESQMETLEEEMEKQAQVF-EADIDAVTRGKVEQEQRAIQAEETLRKTRwknaSVAGKLQDEFKRLSEQMdsmfT 639
Cdd:pfam15921 238 GRIFPVEDQLEALKSESQNKIELLlQQHQDRIEQLISEHEVEITGLTEKASSAR----SQANSIQSQLEIIQEQA----R 309
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 640 SNEKMAMKAMTEanelrmqkrqLEEMIKDANDELRANQAEYEAKLHELSEKLSFKTSQMERMLENLDEKSNEIDNQKRHE 719
Cdd:pfam15921 310 NQNSMYMRQLSD----------LESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQL 379
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 720 EDVTANLNQEIKILKEEIENLKKNQDSLMLQAEQAENLRVDLEKtkksvmeaeaslqrENMKKIELESKISLMRKESESL 799
Cdd:pfam15921 380 QKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDD--------------RNMEVQRLEALLKAMKSECQGQ 445
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 800 AAELQVIKLAKDEKETAISLLQTELETVRSQCDDLKHSLSENDLEMEKHKKQVAHVKSELKKKEETMANLEKKLKESRTA 879
Cdd:pfam15921 446 MERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSR 525
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 880 ITKTAQRNNINKGSPVGAHGGSKEVAVMKDKIKLLEGQIKLKETALESSSNMFIEKEKN---LKNRIEELETKLDQNSQE 956
Cdd:pfam15921 526 VDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTagaMQVEKAQLEKEINDRRLE 605
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 15221736 957 MSENELLNGQENEDIGVLVAEIESLrecngsmEMELKEMRERYSEISLRFAEVEGERQQLVMIVRNLKN 1025
Cdd:pfam15921 606 LQEFKILKDKKDAKIRELEARVSDL-------ELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRN 667
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
535-1010 |
7.35e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 60.08 E-value: 7.35e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 535 VTELENQVESLEAELKKQSEEFSESLCRIKELESQMETLEEEmekqaqvfeadidavtRGKVEQEQRAIQAEETLRKTRW 614
Cdd:PRK03918 240 IEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEK----------------VKELKELKEKAEEYIKLSEFYE 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 615 KNASVAGKLQDEFKRLSEQMDSMftsnEKMAMKAMTEANELRMQKRQLEEMIKDANdELRANQAEYE------AKLHELS 688
Cdd:PRK03918 304 EYLDELREIEKRLSRLEEEINGI----EERIKELEEKEERLEELKKKLKELEKRLE-ELEERHELYEeakakkEELERLK 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 689 EKLSFKT-SQMERMLENLDEKSNEIDNQKRHEEDVTANLNQEIKILKEEIENLKK-------------NQDSLMLQAEQA 754
Cdd:PRK03918 379 KRLTGLTpEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKakgkcpvcgreltEEHRKELLEEYT 458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 755 ENLRvDLEKTKKSVMEAEASLQRENM---KKIELESKISLMRK---ESESLAAELQVIKLAKDEKETaisllqTELETVR 828
Cdd:PRK03918 459 AELK-RIEKELKEIEEKERKLRKELReleKVLKKESELIKLKElaeQLKELEEKLKKYNLEELEKKA------EEYEKLK 531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 829 SQCDDLKHSLS--ENDLEMEKH-KKQVAHVKSELKKKEETMANLEKKLKE----SRTAITKTAQRNNINKGSPVGAHGGS 901
Cdd:PRK03918 532 EKLIKLKGEIKslKKELEKLEElKKKLAELEKKLDELEEELAELLKELEElgfeSVEELEERLKELEPFYNEYLELKDAE 611
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 902 KEVAVMKDKIKLLEGQIKLKETALESSSNMFiekeKNLKNRIEELETKLDQNSQEMSENELLngQENEDIGVLVAEIESL 981
Cdd:PRK03918 612 KELEREEKELKKLEEELDKAFEELAETEKRL----EELRKELEELEKKYSEEEYEELREEYL--ELSRELAGLRAELEEL 685
|
490 500
....*....|....*....|....*....
gi 15221736 982 RECNGSMEMELKEMRERYSEISLRFAEVE 1010
Cdd:PRK03918 686 EKRREEIKKTLEKLKEELEEREKAKKELE 714
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
678-1017 |
7.81e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 60.08 E-value: 7.81e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 678 AEYEAKLHELSEKLSFKTSQMERMLENLDEKSNEIDNQKRHEEDvtANLNQEIKILKEEIEnlkknqdsLMLQAEQAENL 757
Cdd:TIGR02169 166 AEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREK--AERYQALLKEKREYE--------GYELLKEKEAL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 758 RVDLEKTKKSVMEAEASLQrenmkkiELESKISLMRKESESLAAEL-QVIKLAKDEKETAISLLQTELETVRSQCDDLKH 836
Cdd:TIGR02169 236 ERQKEAIERQLASLEEELE-------KLTEEISELEKRLEEIEQLLeELNKKIKDLGEEEQLRVKEKIGELEAEIASLER 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 837 SLSENDLEMEKHKKQVAHVKSELKKKEETMANLEKKLKESRTAITKTaqrnninkgspvgahggSKEVAVMKDKIKLLEG 916
Cdd:TIGR02169 309 SIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKL-----------------TEEYAELKEELEDLRA 371
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 917 QIKLKETALESSsnmfIEKEKNLKNRIEELETKLDQNSQEMSENELLNGQENEDIGVLVAEIESLREcngsmemELKEMR 996
Cdd:TIGR02169 372 ELEEVDKEFAET----RDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEA-------KINELE 440
|
330 340
....*....|....*....|.
gi 15221736 997 ERYSEISLRFAEVEGERQQLV 1017
Cdd:TIGR02169 441 EEKEDKALEIKKQEWKLEQLA 461
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
288-886 |
1.53e-08 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 59.29 E-value: 1.53e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 288 DEVEKLKNELVGLTRQADLSELELQSLRKQ---IVKETKRSQDLLREVNSLKQERDSLKEDCERQK----VSDKQKGETK 360
Cdd:TIGR01612 1111 DEINKIKDDIKNLDQKIDHHIKALEEIKKKsenYIDEIKAQINDLEDVADKAISNDDPEEIEKKIEnivtKIDKKKNIYD 1190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 361 TRNRLQFEgrdpwvLLEETREELDYEKDRNFNL-------RLQLEKTQESNSELILAVQDLEEMLEEkskegADNIEESM 433
Cdd:TIGR01612 1191 EIKKLLNE------IAEIEKDKTSLEEVKGINLsygknlgKLFLEKIDEEKKKSEHMIKAMEAYIED-----LDEIKEKS 1259
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 434 RRSCRSETDEDDhDQKALEDLVKKHVDAKDTHILEQK----ITDLYNE-IEIYKRDKDELEIQMEQLALDYEILKQQNH- 507
Cdd:TIGR01612 1260 PEIENEMGIEMD-IKAEMETFNISHDDDKDHHIISKKhdenISDIREKsLKIIEDFSEESDINDIKKELQKNLLDAQKHn 1338
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 508 -DIS-YKLEQSQLQEQLKIQyECSSSLVDVTELENQVESLEAELKKQSEEfSESLCRIKELESQMETLEEEMEkqAQVFE 585
Cdd:TIGR01612 1339 sDINlYLNEIANIYNILKLN-KIKKIIDEVKEYTKEIEENNKNIKDELDK-SEKLIKKIKDDINLEECKSKIE--STLDD 1414
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 586 ADIDAVTRgKVEQEQRAIQAEETLRKTRWKNAsvagklQDEFKRLSEQMDSMFTSNEK----MAMKAMTEANELRMQKRQ 661
Cdd:TIGR01612 1415 KDIDECIK-KIKELKNHILSEESNIDTYFKNA------DENNENVLLLFKNIEMADNKsqhiLKIKKDNATNDHDFNINE 1487
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 662 LEEMIKDAN---DELRANQAEYEaKLHELSEKLSFKTSQMERMLENLDEKsNEIDNQKRHEEDVTanlnQEIKILKEEIe 738
Cdd:TIGR01612 1488 LKEHIDKSKgckDEADKNAKAIE-KNKELFEQYKKDVTELLNKYSALAIK-NKFAKTKKDSEIII----KEIKDAHKKF- 1560
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 739 NLKKNQDSLMLQAEQAENLRVDLE-----KTKKSVMEAEASLQR-EN--MKKIELESKISLMRKESESLaaELQVIKLAK 810
Cdd:TIGR01612 1561 ILEAEKSEQKIKEIKKEKFRIEDDaakndKSNKAAIDIQLSLENfENkfLKISDIKKKINDCLKETESI--EKKISSFSI 1638
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 811 DEKETAISL-------LQTELETVRSQ---CDDLKHSLSENDLEMEKHKKQVAHVKSE-----LKKKEETMANLEKKLKE 875
Cdd:TIGR01612 1639 DSQDTELKEngdnlnsLQEFLESLKDQkknIEDKKKELDELDSEIEKIEIDVDQHKKNyeigiIEKIKEIAIANKEEIES 1718
|
650
....*....|.
gi 15221736 876 SRTAITKTAQR 886
Cdd:TIGR01612 1719 IKELIEPTIEN 1729
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
650-963 |
3.09e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.02 E-value: 3.09e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 650 TEANELRMQ------KRQLEEMIKDANDELRANQAEYEAKLHELSE---KLSFKTSQMERMLENLDEKSNEIDNQKRHEE 720
Cdd:COG1196 184 TEENLERLEdilgelERQLEPLERQAEKAERYRELKEELKELEAELlllKLRELEAELEELEAELEELEAELEELEAELA 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 721 DVTANLNQEIKILKEEIENLKKNQDSLMLQAEQAENLRVDLEKTKKSVMEAEASLQRENMKKIELESKISLMRKESESLA 800
Cdd:COG1196 264 ELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELE 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 801 AELQVIKLAKDEKETAISLLQTELETVRSQCDDLKHSLSENDLEMEKHKKQVAHVKSELKKKEETMANLEKKLKESRTAI 880
Cdd:COG1196 344 EELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEEL 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 881 TKTAQRnninkgspvgahggSKEVAVMKDKIKLLEGQIKLKETALESSSNMFIEKEKNLKNRIEELETKLDQNSQEMSEN 960
Cdd:COG1196 424 EELEEA--------------LAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEA 489
|
...
gi 15221736 961 ELL 963
Cdd:COG1196 490 AAR 492
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
533-886 |
4.55e-08 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 57.54 E-value: 4.55e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 533 VDVTELENQVESLEAELKKQSEEFSESLCRIKELESQMETLEEEMEKQaqvfeadidavtrgkveqeqraiQAEETLRKT 612
Cdd:pfam12128 590 IDVPEWAASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKA-----------------------SREETFART 646
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 613 RWKNASVA-GKLQDEFKRLSEQMDSMFTSNEKmamKAMTEANELRMQKRQLEEMIKDA----NDELRANQAEYEAKLHEL 687
Cdd:pfam12128 647 ALKNARLDlRRLFDEKQSEKDKKNKALAERKD---SANERLNSLEAQLKQLDKKHQAWleeqKEQKREARTEKQAYWQVV 723
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 688 SEKLSFKTSQMERMLE----NLDEKSNEIDNQKRHE-------EDVTANLNQEIKILKEEIENLKKNQdSLMLQAEQAEN 756
Cdd:pfam12128 724 EGALDAQLALLKAAIAarrsGAKAELKALETWYKRDlaslgvdPDVIAKLKREIRTLERKIERIAVRR-QEVLRYFDWYQ 802
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 757 LRVDLEK----TKKSVMEAEASLQRENMKKIELESKISLMRKESESLAAELQVIKLakDEKETAISLLQTELETVRSQCD 832
Cdd:pfam12128 803 ETWLQRRprlaTQLSNIERAISELQQQLARLIADTKLRRAKLEMERKASEKQQVRL--SENLRGLRCEMSKLATLKEDAN 880
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 15221736 833 D--LKHSLSENDLEMEKHKKQVAHVKSELKKKEETMANLEKKLkeSRTAITKTAQR 886
Cdd:pfam12128 881 SeqAQGSIGERLAQLEDLKLKRDYLSESVKKYVEHFKNVIADH--SGSGLAETWES 934
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
535-918 |
1.33e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.84 E-value: 1.33e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 535 VTELENQVESLEAELKKQSEEFSESLCRIKELESQMETLEEEMEKQAQVfeadiDAVTRGKVEQEQRAIQAE-ETLRKTR 613
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERY-----QALLKEKREYEGYELLKEkEALERQK 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 614 WKNASVAGKLQDEFKRLSEQMDSMftsnekmaMKAMTEANELRMQ-KRQLEEMIKDANDELRANQAEYEAKLHELSEKLS 692
Cdd:TIGR02169 240 EAIERQLASLEEELEKLTEEISEL--------EKRLEEIEQLLEElNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIA 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 693 FKTSQMERMLENLDEKSNEIDNQKRHEEDVTANLNQEIKILKEEIENLKKNQDSLMLQAEQAENLRVDLEKTKKSVMEAE 772
Cdd:TIGR02169 312 EKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYR 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 773 ASLQRENMKKIELESKISLMRKESESLAAELQVIKLAKDEKETAISLLQTELETVRSQcddlkhsLSENDLEMEKHKKQV 852
Cdd:TIGR02169 392 EKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALE-------IKKQEWKLEQLAADL 464
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15221736 853 AHVKSELKKKEETMANLEKKLKESRTAITKT-AQRNNINKGSPvgahGGSKEVAVMKDKIKLLEGQI 918
Cdd:TIGR02169 465 SKYEQELYDLKEEYDRVEKELSKLQRELAEAeAQARASEERVR----GGRAVEEVLKASIQGVHGTV 527
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
316-971 |
2.06e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.53 E-value: 2.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 316 KQIVKETKRSQDLLREVNSLKQERDSLKEDCERQKVSDKQKGETKTRNRLQFEGRDPWVLLEETREEldYEKDRNFNLRL 395
Cdd:PTZ00121 1308 KKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKE--EAKKKADAAKK 1385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 396 QLEKTQESNSELILAVQDLEEMLEEKSKEGADNIEESMRRSCRSETDEDDHDQKALEdlVKKHVDAKDTHILEQKITDLY 475
Cdd:PTZ00121 1386 KAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEE--AKKADEAKKKAEEAKKAEEAK 1463
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 476 NEIEiYKRDKDELEIQMEQlALDYEILKQQNHDISYKLEQSQLQEQLKIQYEcssSLVDVTELENQVESLEAELKKQSEE 555
Cdd:PTZ00121 1464 KKAE-EAKKADEAKKKAEE-AKKADEAKKKAEEAKKKADEAKKAAEAKKKAD---EAKKAEEAKKADEAKKAEEAKKADE 1538
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 556 FSESLCRIKElesqmetleEEMEKQAQVFEADidavTRGKVEQEQRaiqaEETLRKTRWKNASVAGKLQDefKRLSEQMd 635
Cdd:PTZ00121 1539 AKKAEEKKKA---------DELKKAEELKKAE----EKKKAEEAKK----AEEDKNMALRKAEEAKKAEE--ARIEEVM- 1598
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 636 SMFTSNEKMAMKAMTEANELRMQKRQL--EEMIKDANDELRANQAEYEAKLHELseklsfKTSQMERMLENLDEKSNEID 713
Cdd:PTZ00121 1599 KLYEEEKKMKAEEAKKAEEAKIKAEELkkAEEEKKKVEQLKKKEAEEKKKAEEL------KKAEEENKIKAAEEAKKAEE 1672
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 714 NQKRHEEdvtanlnqeikiLKEEIENLKKNQDSLMLQAEQAENlrvdLEKTKKSvmEAEASLQRENMKKIELESKISLMR 793
Cdd:PTZ00121 1673 DKKKAEE------------AKKAEEDEKKAAEALKKEAEEAKK----AEELKKK--EAEEKKKAEELKKAEEENKIKAEE 1734
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 794 KESESLAAELQVIKLAKDEKEtaisllqteletvRSQCDDLKHSLSENDLEMEKHKKQVahVKSELKKKEET-MANLEKK 872
Cdd:PTZ00121 1735 AKKEAEEDKKKAEEAKKDEEE-------------KKKIAHLKKEEEKKAEEIRKEKEAV--IEEELDEEDEKrRMEVDKK 1799
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 873 LKESRTAITKTAQRNniNKGSPVGAHGGSKEVAVMKDkikLLEGQIKLKETALESSSNMFIEKEKNLKNRIEELETKLDQ 952
Cdd:PTZ00121 1800 IKDIFDNFANIIEGG--KEGNLVINDSKEMEDSAIKE---VADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEK 1874
|
650
....*....|....*....
gi 15221736 953 NSQEMSENELLNGQENEDI 971
Cdd:PTZ00121 1875 DLKEDDEEEIEEADEIEKI 1893
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
509-992 |
2.10e-07 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 55.13 E-value: 2.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 509 ISYKLEQSQLQEQLKiQYECSSSLVDVtELENQVESLEAELKKQSEEFSESLCRIKELESQMETLEEEMEKQ---AQVFE 585
Cdd:pfam05557 5 IESKARLSQLQNEKK-QMELEHKRARI-ELEKKASALKRQLDRESDRNQELQKRIRLLEKREAEAEEALREQaelNRLKK 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 586 ADIDAVTRGKVEQEQRAIQAEETLRKTRWKNASVAGKLQDEFKRLSEQMDSMFTSNEKMAM--KAMTEANELRMQKRQLE 663
Cdd:pfam05557 83 KYLEALNKKLNEKESQLADAREVISCLKNELSELRRQIQRAELELQSTNSELEELQERLDLlkAKASEAEQLRQNLEKQQ 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 664 EMIKDAndELRANQAEYEAKLHElSEKLSFKTSQMErmLENLDEKSNEIDNQKRHEEDVTANlNQEIKILKEEIENLKKN 743
Cdd:pfam05557 163 SSLAEA--EQRIKELEFEIQSQE-QDSEIVKNSKSE--LARIPELEKELERLREHNKHLNEN-IENKLLLKEEVEDLKRK 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 744 QDSLMLQAEQAENLRVDLEKTKKSVMEAEASLQRENM---KKIELESKISLMRKESESLAAELQVIKLAKDEKETAISLL 820
Cdd:pfam05557 237 LEREEKYREEAATLELEKEKLEQELQSWVKLAQDTGLnlrSPEDLSRRIEQLQQREIVLKEENSSLTSSARQLEKARREL 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 821 QTELETVRSQCDDLKHSLSENDLEMEKHKKQVAHVKSELKKKEETMANLEKKLKESRTAITKTAQrnninkgspvgahgg 900
Cdd:pfam05557 317 EQELAQYLKKIEDLNKKLKRHKALVRRLQRRVLLLTKERDGYRAILESYDKELTMSNYSPQLLER--------------- 381
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 901 SKEVAVMKDKIKLLEGQIKLKETALESSSNMFIEKEKNLKNRIEELETKLDQNSQEMSENELLN-GQENEDigvLVAEIE 979
Cdd:pfam05557 382 IEEAEDMTQKMQAHNEEMEAQLSVAEEELGGYKQQAQTLERELQALRQQESLADPSYSKEEVDSlRRKLET---LELERQ 458
|
490
....*....|...
gi 15221736 980 SLRECNGSMEMEL 992
Cdd:pfam05557 459 RLREQKNELEMEL 471
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
289-593 |
2.71e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.06 E-value: 2.71e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 289 EVEKLKNELVGLTRQADLSELELQSLRKQIVKETKRSQDLLREVNSLKQERDSLKEDCERQK----VSDKQKGETKTR-N 363
Cdd:TIGR02168 734 DLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKeelkALREALDELRAElT 813
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 364 RLQFEGRDPWVLLEETREELDYEKDRNFNLRLQLEKTQESNSELILAVQDLEEMLEEKSKEGADNIEESMRRSCRSETDE 443
Cdd:TIGR02168 814 LLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLR 893
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 444 DDHDQKaledlvkkhvdAKDTHILEQKITDLyneieiyKRDKDELEIQMEQLALDYEILKQQNHDIsykleQSQLQEQLK 523
Cdd:TIGR02168 894 SELEEL-----------SEELRELESKRSEL-------RRELEELREKLAQLELRLEGLEVRIDNL-----QERLSEEYS 950
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 524 IQYECSSSLV-----DVTELENQVESLEAELKKQS-------EEFSESLCRIKELESQMETLEEEMEKQAQVFEaDIDAV 591
Cdd:TIGR02168 951 LTLEEAEALEnkiedDEEEARRRLKRLENKIKELGpvnlaaiEEYEELKERYDFLTAQKEDLTEAKETLEEAIE-EIDRE 1029
|
..
gi 15221736 592 TR 593
Cdd:TIGR02168 1030 AR 1031
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
275-961 |
3.13e-07 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 54.59 E-value: 3.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 275 IVARDTAINSSDEDEVEKLKNELVGLT----RQADLSELELQSLRKQIVKETKRSQDLLREVNSLKQERDSLKEDCERQK 350
Cdd:TIGR00618 181 LALMEFAKKKSLHGKAELLTLRSQLLTlctpCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQ 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 351 VSDKQKGETKTRNRLQFEgrdpwvlLEETREELdyekdrnfNLRLQLEKTQESNSELILAVQDLEEMLEEKSKEGADNIE 430
Cdd:TIGR00618 261 LLKQLRARIEELRAQEAV-------LEETQERI--------NRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAK 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 431 ESMRRscrsetdeddhdqkalEDLVKKHVDAKDTHILEQKITDLYNEIEIYKRDKDELEIQMEQLALDYEILKQQNHDIS 510
Cdd:TIGR00618 326 LLMKR----------------AAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKT 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 511 YKLEQSQLQEQLKIQYECSSSLVDVTELENQVESLEAELKKQSEEFSESLCRIKELESQMETLEEEMEKQAQVfeaDIDA 590
Cdd:TIGR00618 390 TLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQ---ESAQ 466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 591 VTRGKVEQEQRAIQAEETLRKTRWKNASVAGKLQDEFKRLSEQMDSMftsNEKMAMKAMTEANELRMQK-----RQLEEM 665
Cdd:TIGR00618 467 SLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHP---NPARQDIDNPGPLTRRMQRgeqtyAQLETS 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 666 IKDAN---DELRANQAEYEAKLHELSEKLSFKTSQMERMLENLDEKSNEIDnqkRHEEDVTANLNQEIKILKEEIENLKK 742
Cdd:TIGR00618 544 EEDVYhqlTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITV---RLQDLTEKLSEAEDMLACEQHALLRK 620
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 743 NQdslmlqaEQAENLRVDLEKTKKSVMEAEASLQRENMKKIELESKISLMRKESESLAAELQVIKLAKDEKETAISLLQT 822
Cdd:TIGR00618 621 LQ-------PEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLT 693
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 823 ELETVRSQCDDLKHSLSENDLEMEKHKKQVAHV----KSELKKKEETMANLEKKLKESRTAITK--TAQRNNINKGSPVG 896
Cdd:TIGR00618 694 YWKEMLAQCQTLLRELETHIEEYDREFNEIENAssslGSDLAAREDALNQSLKELMHQARTVLKarTEAHFNNNEEVTAA 773
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 897 AHGGSKEVAVMKD-------------KIKLLEGQIKLK----ETALESSSNMFIEKEKNLKNRIEELETKLDQNSQEMSE 959
Cdd:TIGR00618 774 LQTGAELSHLAAEiqffnrlreedthLLKTLEAEIGQEipsdEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLK 853
|
..
gi 15221736 960 NE 961
Cdd:TIGR00618 854 YE 855
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
290-774 |
6.12e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 53.62 E-value: 6.12e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 290 VEKLKNELVGLTR-QADLSELELQSLRKQIvKETKRSQDLLREVNSLKQERDSLKEDCERQKVSDKQKGETKTRNRLQFE 368
Cdd:COG4717 48 LERLEKEADELFKpQGRKPELNLKELKELE-EELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQ 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 369 GRDPWVLLEETREELDYEKDRNFNLRLQLEKTQEsnselilavqdleemLEEKSKEGADNIEESMRRSCRSETDEDDHDQ 448
Cdd:COG4717 127 LLPLYQELEALEAELAELPERLEELEERLEELRE---------------LEEELEELEAELAELQEELEELLEQLSLATE 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 449 KALEDLVKKHVDakdthiLEQKITDLYNEIEIYKRDKDELEIQMEQLALDYEILKQQNHDISYKLEQSQLQEQLKIQYEC 528
Cdd:COG4717 192 EELQDLAEELEE------LQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLG 265
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 529 SSSLVDVTELENQVESLEA-------ELKKQSEEFSESLCRIKELESQMETLEEEMEKQAQVFEADIDAVTRGKVEQEQR 601
Cdd:COG4717 266 GSLLSLILTIAGVLFLVLGllallflLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDR 345
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 602 AIQAEETLRKTRWKNASVagKLQDEFKRLSEQMDSMFTSNEKM---AMKAMTEANELRMQKRQLEEMIKDANDELRA--- 675
Cdd:COG4717 346 IEELQELLREAEELEEEL--QLEELEQEIAALLAEAGVEDEEElraALEQAEEYQELKEELEELEEQLEELLGELEElle 423
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 676 --NQAEYEAKLHELSEKLSFKTSQMERMLENLDEKSNEIDNQKrhEEDVTANLNQEIKILKEEIENLKKNQDSLMLQAEQ 753
Cdd:COG4717 424 alDEEELEEELEELEEELEELEEELEELREELAELEAELEQLE--EDGELAELLQELEELKAELRELAEEWAALKLALEL 501
|
490 500
....*....|....*....|.
gi 15221736 754 AENLRVDLEKTKKSVMEAEAS 774
Cdd:COG4717 502 LEEAREEYREERLPPVLERAS 522
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
645-889 |
7.10e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.84 E-value: 7.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 645 AMKAMTEANELRMQKRQLEEMIKDANDELRANQAEYEAKLHELsEKLSFKTSQMERMLENLDEKSNEIDNQKrheedvtA 724
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQL-AALERRIAALARRIRALEQELAALEAEL-------A 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 725 NLNQEIKILKEEIENLKKNQDSLMLQAEQAENL-RVDLEKTKKSVMEAEASLQRENMKKIELESKISLMRKESESLAAEL 803
Cdd:COG4942 87 ELEKEIAELRAELEAQKEELAELLRALYRLGRQpPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALR 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 804 QVIKLAKDEKETAISLLQTELETVRSQCDDLKHSLSENDLEMEKHKKQVAhvksELKKKEETMANLEKKLKESRTAITKT 883
Cdd:COG4942 167 AELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELA----ELQQEAEELEALIARLEAEAAAAAER 242
|
....*.
gi 15221736 884 AQRNNI 889
Cdd:COG4942 243 TPAAGF 248
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
287-875 |
9.50e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 53.10 E-value: 9.50e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 287 EDEVEKLKNELVGLTRQADLSELELQSLRKQIVKETKRSQDLLREVNSLKQERDSLKEDcerqkVSDKQKGETKTRNRLq 366
Cdd:TIGR04523 123 EVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKE-----KLNIQKNIDKIKNKL- 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 367 fegrdpwVLLEETREELDYEKDRNFNLRLQLEKTQESNSELILAVQDLEEMLEEKSKEGADNieesmrrscrsetdeddh 446
Cdd:TIGR04523 197 -------LKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNT------------------ 251
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 447 dQKALEDLVKKHVDAKDThiLEQKItdlyNEIEIYKRDKDELEIQMEQLALDYEILKQQNHDISYKLEQSQLQEQLK--- 523
Cdd:TIGR04523 252 -QTQLNQLKDEQNKIKKQ--LSEKQ----KELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKELKSELKNQEKkle 324
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 524 -IQYECSSSLVDVTELENQVESLEAELKKQSEEFSESLCRIKELESQMETLEEEMEKQAQvfeaDIDAVTRGKVEQEQRA 602
Cdd:TIGR04523 325 eIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQ----EIKNLESQINDLESKI 400
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 603 IQAEEtlrktrwknasvagklqdefkrLSEQMDSMFTSNEKMAMKAMTEANELRMQKRQLEEMIKDANDELRANQAEYEa 682
Cdd:TIGR04523 401 QNQEK----------------------LNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIK- 457
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 683 KLHELSEKLSFKTSQMERMLENLDEKSNEIDNQKRHEEDVTANLNQEIKILKEEIENLKKNQDSLMLQAEQAENlrvdlE 762
Cdd:TIGR04523 458 NLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLES-----E 532
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 763 KTKKsvmEAEASLQRENMKKIELESKISLMRKESESLAAELQVIKLAKDEKETAISLLQTELETVRSQCDDLKHSLSEND 842
Cdd:TIGR04523 533 KKEK---ESKISDLEDELNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKE 609
|
570 580 590
....*....|....*....|....*....|...
gi 15221736 843 LEMEKHKKQVAHVKSELKKKEETMANLEKKLKE 875
Cdd:TIGR04523 610 KKISSLEKELEKAKKENEKLSSIIKNIKSKKNK 642
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
623-1016 |
1.43e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 52.35 E-value: 1.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 623 LQDEFKRLSEQMDsmFTSNEKMAMKAMTEANElrmQKRQLEEMIKDANDELRANQAEYEAKLHELSEKLSFKTSQMERML 702
Cdd:PRK02224 218 LDEEIERYEEQRE--QARETRDEADEVLEEHE---ERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELE 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 703 ENLDEKSNEIDNQkrheedvtanlNQEIKILKEEIENLKKNQDSLmlqAEQAENLRVDLEKTKKsvmeaEASLQRENMKK 782
Cdd:PRK02224 293 EERDDLLAEAGLD-----------DADAEAVEARREELEDRDEEL---RDRLEECRVAAQAHNE-----EAESLREDADD 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 783 IELESKisLMRKESESLAAELQVIKLAKDEKETAISLLQTELETVRSQCDDLKHSLSendlEMEKHKKQVAHVKSELKKK 862
Cdd:PRK02224 354 LEERAE--ELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLG----NAEDFLEELREERDELRER 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 863 EetmANLEKKLKESRTAITKTAQRNNINK----GSPVGAHGGSKEVAVMKDKIKLLEG---QIKLKETALESSSNM---F 932
Cdd:PRK02224 428 E---AELEATLRTARERVEEAEALLEAGKcpecGQPVEGSPHVETIEEDRERVEELEAeleDLEEEVEEVEERLERaedL 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 933 IEKEK---NLKNRIEELETKLDQNSQEMSENELLNGQENEDIGVLVAEIESLRECNGSMEMELKEMRERYSEISLRFAEV 1009
Cdd:PRK02224 505 VEAEDrieRLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAEL 584
|
....*..
gi 15221736 1010 EGERQQL 1016
Cdd:PRK02224 585 KERIESL 591
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
394-830 |
1.75e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 52.08 E-value: 1.75e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 394 RLQLEKTQESNSELILA-VQDLEEMLEEKSKEGADNIE-ESMRRSCRSETDEDDHDQKALEDLVKKHVDAKDTHILEQKI 471
Cdd:COG4717 55 ADELFKPQGRKPELNLKeLKELEEELKEAEEKEEEYAElQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQEL 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 472 TDLYNEIEIYKRDKDELEIQMEQLA---LDYEILKQQNHDISYKLEQSQLQEQLKIQYECSSSLVDVTELENQVESLEAE 548
Cdd:COG4717 135 EALEAELAELPERLEELEERLEELReleEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEE 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 549 LKKQSEEFSESLCRIKELESQMETLEEEMEKQAQVFEADIDAVTRGKVEQEQRAIQAEET--------------LRKTRW 614
Cdd:COG4717 215 LEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTiagvlflvlgllalLFLLLA 294
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 615 KNASVAGKLQDEFKRLS-------EQMDSMFTSNEKMAMKAMTEANELRMQKRQLEEMIKDANDELRanQAEYEAKLHEL 687
Cdd:COG4717 295 REKASLGKEAEELQALPaleeleeEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEE--ELQLEELEQEI 372
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 688 SEKLSFKTSQMERMLENLDEKSNEIDNQKRHEEDVTANLNQEIKILKEEIENLKKnqDSLMLQAEQAENLRVDLEKTKKS 767
Cdd:COG4717 373 AALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDE--EELEEELEELEEELEELEEELEE 450
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15221736 768 VMEAEASLQREnMKKIELESKISLMRKESESLAAELQVIKLAKDEKETAISLLQTELETVRSQ 830
Cdd:COG4717 451 LREELAELEAE-LEQLEEDGELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYREE 512
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
287-795 |
2.20e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 52.04 E-value: 2.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 287 EDEVEKLKNELVgltrQADLSELELQSLRKQIVKETKRSQDLLREV--NSLKQERDSLKEDCERQKVSDKQKGETKTRNR 364
Cdd:pfam15921 341 EDKIEELEKQLV----LANSELTEARTERDQFSQESGNLDDQLQKLlaDLHKREKELSLEKEQNKRLWDRDTGNSITIDH 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 365 LQFEGRDPWV-------LLEETREELDYEKDRNFNLRLQLEKTQESNSELILAVQDLEEMLEEKSKE--GADNIEESMRR 435
Cdd:pfam15921 417 LRRELDDRNMevqrleaLLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEEltAKKMTLESSER 496
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 436 SCRSETDEDDHDQKALEDL------VKKHVDAKDTHIleQKITDLYNEIEIYKRDKDELEIQMEQLALDYEILKQQNHDI 509
Cdd:pfam15921 497 TVSDLTASLQEKERAIEATnaeitkLRSRVDLKLQEL--QHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENM 574
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 510 SYKLEQSQlqeqlkiqYECSSSLVDVTELENQVESLEAELKKQSEEFSESLCRIKELESQMETLEEEMEKQAQVFEADID 589
Cdd:pfam15921 575 TQLVGQHG--------RTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLR 646
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 590 AVTRGKVEQEQrAIQAEETLRKTRWKNASVAGKLQDEFKRLSEQMDsmfTSNEKMAMKAMTEANELRMQKRQLEEMIKDA 669
Cdd:pfam15921 647 AVKDIKQERDQ-LLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEME---TTTNKLKMQLKSAQSELEQTRNTLKSMEGSD 722
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 670 NDELRAN---QAEYEAKLHELsEKLSFKTSQMERMLENLDEKSNEIDNQKRHEEDVTANLNQEIKILKEEIENLKKNQDS 746
Cdd:pfam15921 723 GHAMKVAmgmQKQITAKRGQI-DALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERR 801
|
490 500 510 520
....*....|....*....|....*....|....*....|....*....
gi 15221736 747 LmlqAEQAENLRVDLEKTKKSVMEAEASLQRENMKKIELESKISLMRKE 795
Cdd:pfam15921 802 L---KEKVANMEVALDKASLQFAECQDIIQRQEQESVRLKLQHTLDVKE 847
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
467-661 |
2.54e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 51.56 E-value: 2.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 467 LEQKITDLYNEIEIYKRDKDELEIQMEQLALDYEI--LKQQNHDISYKLEQSQ-----LQEQLKIQYECSSSLVD---VT 536
Cdd:COG3206 187 LRKELEEAEAALEEFRQKNGLVDLSEEAKLLLQQLseLESQLAEARAELAEAEarlaaLRAQLGSGPDALPELLQspvIQ 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 537 ELENQVESLEAELKKQSEEFSESLCRIKELESQMETLEEEMEKQAQVFEADIDAVTRGKVEQEQRAIQAEETLRktrwKN 616
Cdd:COG3206 267 QLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLE----AR 342
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 15221736 617 ASVAGKLQDEFKRLSEQMDsmftSNEKMAMKAMTEANELRMQKRQ 661
Cdd:COG3206 343 LAELPELEAELRRLEREVE----VARELYESLLQRLEEARLAEAL 383
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
540-810 |
5.21e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.76 E-value: 5.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 540 NQVESLEAELKKQSEEFSESLCRIKELESQMETLEEEMEKQaqvfEADIDAVTRGKVEQEQRAIQAEETLRKTRWKNASV 619
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAAL----ERRIAALARRIRALEQELAALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 620 AGKLQDEFKRLSEQMDSMFTSNEKMAMKAMTEANELRMQKRQLEeMIKDANDELRANQAEYEAKLHELseklsfktsqme 699
Cdd:COG4942 96 RAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQ-YLKYLAPARREQAEELRADLAEL------------ 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 700 rmlenldeksneidnqkrheEDVTANLNQEIKILKEEIENLKKNQDSLMLQAEQAENLRVDLEKTKKSVMEAEASLQREn 779
Cdd:COG4942 163 --------------------AALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQE- 221
|
250 260 270
....*....|....*....|....*....|.
gi 15221736 780 mkKIELESKISLMRKESESLAAELQVIKLAK 810
Cdd:COG4942 222 --AEELEALIARLEAEAAAAAERTPAAGFAA 250
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
277-1029 |
5.40e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 50.74 E-value: 5.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 277 ARDTAINSSDEDEVEKLKNELVGLTRQADLSELELQSLRKQIVKETKRSQDLLREVNSLKQERDSLKEDCERQKVSDKQK 356
Cdd:pfam02463 206 AKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 357 GETKTRNRLQFEGRDPWVLLEETREELDYEKDRNFNLRLQLEKTQESNSELILAVQDLEEMLEEKSKEGADNIEESMRRS 436
Cdd:pfam02463 286 EELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQ 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 437 CRSETDEDDHDQKA-----------------LEDLVKKHVDAKDTHILEQKITDLyNEIEIYKRDKDELEIQMEQLALDY 499
Cdd:pfam02463 366 EKLEQLEEELLAKKkleserlssaaklkeeeLELKSEEEKEAQLLLELARQLEDL-LKEEKKEELEILEEEEESIELKQG 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 500 EILKQQNHDISYKLEQSQLQEQLKIQYECSSSLVDVTELENQVESLEAELKKQSE-EFSESLCRIKELESQMETLE---- 574
Cdd:pfam02463 445 KLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSqKESKARSGLKVLLALIKDGVggri 524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 575 -------EEMEKQAQVFEADIDAVTRGKVEQEQRAIQAEETLRKTRWKNASVAGKLQ--DEFKRLSEQMDSMFTSN---- 641
Cdd:pfam02463 525 isahgrlGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRllIPKLKLPLKSIAVLEIDpiln 604
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 642 ----EKMAMKAMTEANELRMQKRQLEEMIKDANDELRANQAEYEAKLHELSEKLSFKTSQMERMLENLDE-KSNEIDNQK 716
Cdd:pfam02463 605 laqlDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKElLEIQELQEK 684
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 717 RHEEDVTANLNQEIKILKEEIENLKKNQDSLMLQAEQAENLRVDLEKTKKSVMEAEASLQRENMKKIELESKISLMRKES 796
Cdd:pfam02463 685 AESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEE 764
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 797 ESLAAELQVIKLAKDEKETAISLLQTELET-VRSQCDDLKHSLSENDLEMEKHKKQVAHVKSELKKKEETMANLEKKLKE 875
Cdd:pfam02463 765 EKSELSLKEKELAEEREKTEKLKVEEEKEEkLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKE 844
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 876 SRTAITKTAQRNNINKGS--------PVGAHGGSKEVAVMKDKIKLLEGQIKLKETALESSSNMFIEKEKNLKNRIEELE 947
Cdd:pfam02463 845 EQKLEKLAEEELERLEEEitkeellqELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIK 924
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 948 TKLDQNSQEMSENELLNGQENEDIGVLVAEIESLRECNGSMEMELKEMRERYSEISLRFAEVEGERQQLVMIVRNLKNAK 1027
Cdd:pfam02463 925 EEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEK 1004
|
..
gi 15221736 1028 RS 1029
Cdd:pfam02463 1005 KK 1006
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
502-767 |
9.51e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.99 E-value: 9.51e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 502 LKQQNHDISYKLEQSQlQEQLKIQYECSSSLVDVTELENQVESLEAELKKQSEEFSESLCRIKELESQMETLEEEMEKQA 581
Cdd:COG4942 25 AEAELEQLQQEIAELE-KELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 582 QVFeadidavtrgkveqEQRAIQAEETLRKTRWKNASVAGKLQDEFKRLseqmdsmftsnekMAMKAMTEAnelrmQKRQ 661
Cdd:COG4942 104 EEL--------------AELLRALYRLGRQPPLALLLSPEDFLDAVRRL-------------QYLKYLAPA-----RREQ 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 662 LEEMIKDAnDELRANQAEYEAKLHELseklsfktsqmERMLENLDEKSNEIDNQKRHEEDVTANLNQEIKILKEEIENLK 741
Cdd:COG4942 152 AEELRADL-AELAALRAELEAERAEL-----------EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQ 219
|
250 260
....*....|....*....|....*.
gi 15221736 742 KNQDSLMLQAEQAENLRVDLEKTKKS 767
Cdd:COG4942 220 QEAEELEALIARLEAEAAAAAERTPA 245
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
302-1025 |
1.18e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 49.66 E-value: 1.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 302 RQADLSELELQSLRKQIVKETKRSQDLLREVNSLKQErdslKEDCERQKVSDKQKGETKTRNRLQfegrdpwvLLEETRE 381
Cdd:TIGR00606 195 RQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEA----QLESSREIVKSYENELDPLKNRLK--------EIEHNLS 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 382 ELDYEKDRNFNLRLQLEKTQESNSELILAVQDLEEMLEEKSKEgadnIEESMRRSCRSETDEDDHDQKALEDLvkkhvdA 461
Cdd:TIGR00606 263 KIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQGTDEQLND----LYHNHQRTVREKERELVDCQRELEKL------N 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 462 KDTHILEQKITDLYNEIEIYKRDKDEleIQMEQLALDYEILKQQNHDISYKLEQSQLQE-------QLKIQYEcSSSLVD 534
Cdd:TIGR00606 333 KERRLLNQEKTELLVEQGRLQLQADR--HQEHIRARDSLIQSLATRLELDGFERGPFSErqiknfhTLVIERQ-EDEAKT 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 535 VTELENQVESLEAELKKQSEEFSE---SLCRIKELESQMETLEEEMEKQAQVFEADIDAVTRGKVEQEQRAIQAEETLRK 611
Cdd:TIGR00606 410 AAQLCADLQSKERLKQEQADEIRDekkGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSK 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 612 TRwKNASVAGKLQDEFKRLSEQMDSMFT-SNEKMAMKAMTEANELRMQKRQLEEMIKDANDELRANQAEYEAKLHELSEK 690
Cdd:TIGR00606 490 AE-KNSLTETLKKEVKSLQNEKADLDRKlRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGY 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 691 LSFKtSQMERMLENLDEKSNEIDNQKRHEEDVTANLNQEIKILKEEIENLKKNQDSL---MLQAEQAENLRVDLEKTKKS 767
Cdd:TIGR00606 569 FPNK-KQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYedkLFDVCGSQDEESDLERLKEE 647
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 768 VMEAEASLQRENMKKIELESKISLMRKESESLAAELQVIKLAKDEKETAISLLQTELETVRSQCDDLKHSLSENDLEMEK 847
Cdd:TIGR00606 648 IEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDE 727
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 848 HKKQVAHVKSELKKKEETMANLEKKLKESRTAITKtaQRNNINKGSPVGAHGGSKE---------VAVMKD-KIKLLEGQ 917
Cdd:TIGR00606 728 MLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQR--LKNDIEEQETLLGTIMPEEesakvcltdVTIMERfQMELKDVE 805
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 918 IKLKETALESSSNMFIEKEKNLKNRIEELETKLDQNSQEMSENELLNGQENEDIGVLVAEIESLrecnGSMEMELKEMRE 997
Cdd:TIGR00606 806 RKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNEL----KSEKLQIGTNLQ 881
|
730 740
....*....|....*....|....*...
gi 15221736 998 RYSEISLRFAEVEGERQQLVMIVRNLKN 1025
Cdd:TIGR00606 882 RRQQFEEQLVELSTEVQSLIREIKDAKE 909
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
468-740 |
1.39e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.14 E-value: 1.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 468 EQKITDLYNEIEIYKRDKDELEIQMEQLALDYEILKQQNHDISYKLEQS--------------QLQEQLKiqyECSSSLV 533
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSwdeidvasaereiaELEAELE---RLDASSD 685
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 534 DVTELENQVESLEAELKKQSEEFSESLCRIKELESQMETLEEEmekQAQVFEADIDAVTRGKVEQEQRAIQaeetlrktR 613
Cdd:COG4913 686 DLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEE---LDELQDRLEAAEDLARLELRALLEE--------R 754
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 614 WKNASVAGKLQDEFKRLSEQMDsmfTSNEKMAmKAMTEANELRMQ-KRQLEEMIKDANDELRANqAEYEAKLHEL-SEKL 691
Cdd:COG4913 755 FAAALGDAVERELRENLEERID---ALRARLN-RAEEELERAMRAfNREWPAETADLDADLESL-PEYLALLDRLeEDGL 829
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 15221736 692 SFKTSQMERMLenldeKSNEIDNQkrheEDVTANLNQEIKILKEEIENL 740
Cdd:COG4913 830 PEYEERFKELL-----NENSIEFV----ADLLSKLRRAIREIKERIDPL 869
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
468-1002 |
1.40e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 49.33 E-value: 1.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 468 EQKITDLYNEIEIYKRDKDELEIQMEQLALDYEILKQQNHDISYKLEQSQ-------------LQEQLKIQYECSSSLVD 534
Cdd:pfam05483 105 ENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNATRhlcnllketcarsAEKTKKYEYEREETRQV 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 535 VTELENQVESLEA---ELKKQSEEFS-ESLCRIKELESQMETLEEEMEKQAQVFEADIDAVTRGKVEQEQRAIQAEETLR 610
Cdd:pfam05483 185 YMDLNNNIEKMILafeELRVQAENARlEMHFKLKEDHEKIQHLEEEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLE 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 611 KTRWKNASV--AGKLQDE-FKRLSEQMDSMFTSNEKMAMKAMTEANelrmQKRQLEEMIKDANDELRANQAEYEAKLHEL 687
Cdd:pfam05483 265 ESRDKANQLeeKTKLQDEnLKELIEKKDHLTKELEDIKMSLQRSMS----TQKALEEDLQIATKTICQLTEEKEAQMEEL 340
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 688 SEKL---SFKTSQMERMLENLDEKSNEIDNQKRHEEDVTANLNQEIKILKEEIENLKKNQDSLMLQAEQAENLRVDLEKT 764
Cdd:pfam05483 341 NKAKaahSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVELEELKKILAEDEKL 420
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 765 KKSVMEAEASLQRENMKKIELESKISLMRKESESLAAELQVIKLAKDEKETAISLLQTELETVRSQCDDLKHSLSENDLE 844
Cdd:pfam05483 421 LDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLE 500
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 845 MEKHKKQVAHVKSELKKKEETMANLEKK----LKESRTAITKTAQRNNINKGSPVGAHGGSKEVAVMKDKIKLLEGQIKL 920
Cdd:pfam05483 501 NKELTQEASDMTLELKKHQEDIINCKKQeermLKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEY 580
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 921 KETALESSSNMFIEKEKNLKNRIEELETKLDQNSQEMSENELLNGQENEDIGVLVAEIESLrecngsmEMELKEMRERYS 1000
Cdd:pfam05483 581 EVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKL-------ELELASAKQKFE 653
|
..
gi 15221736 1001 EI 1002
Cdd:pfam05483 654 EI 655
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
289-980 |
1.51e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 49.27 E-value: 1.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 289 EVEKLKNELVGLTRQAD--LSELELQSLRKQIVKETKRSQDLLREVNSLKQERDSLKEDCERQK--------VSDKQKGE 358
Cdd:TIGR00606 327 ELEKLNKERRLLNQEKTelLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFSERqiknfhtlVIERQEDE 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 359 TKTRNRLQFEGRDPWVLLEETREELDYEKDrnfnlrlQLEKTQESNSELILAVQdleEMLEEKSKEGaDNIEESMRRSCR 438
Cdd:TIGR00606 407 AKTAAQLCADLQSKERLKQEQADEIRDEKK-------GLGRTIELKKEILEKKQ---EELKFVIKEL-QQLEGSSDRILE 475
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 439 setdEDDHDQKALEDLVKKHVDAkDTHILEQKITDLYNEIEIYKRDKDELEIQMEQLALDYEILKQQNHDISYKLEQSQL 518
Cdd:TIGR00606 476 ----LDQELRKAERELSKAEKNS-LTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQ 550
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 519 QEQLKIQY--ECSSSLVDV---TELENQVESLEAELKKQSEEFSE---SLCRIKELESQMETLEEEMEKQAQVFEADIDA 590
Cdd:TIGR00606 551 IRKIKSRHsdELTSLLGYFpnkKQLEDWLHSKSKEINQTRDRLAKlnkELASLEQNKNHINNELESKEEQLSSYEDKLFD 630
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 591 VTrGKVEQEQRAIQAEETLRKTRWKNASVAGKlqdefkrlSEQMDSMFTSNEKMAMKAMTEANELRMQKRQLEEMIKDAN 670
Cdd:TIGR00606 631 VC-GSQDEESDLERLKEEIEKSSKQRAMLAGA--------TAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQ 701
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 671 DELRAnqaeYEAKLHELSEKLSFKTSQMERMLENLDEKSNEIDNQKRHEEDV---TANLNQEIKILKEEIENLKKNQDSL 747
Cdd:TIGR00606 702 SKLRL----APDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELrnkLQKVNRDIQRLKNDIEEQETLLGTI 777
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 748 MLQAEQAENLRVDLEKTKKSVMEAEASLQR-----ENMKKIELESKISLMRKESESLAAELQVIKLAKDEKETAISLLQT 822
Cdd:TIGR00606 778 MPEEESAKVCLTDVTIMERFQMELKDVERKiaqqaAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQE 857
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 823 ELETVRSQCDDLKH---SLSEN-------DLEMEKHKKQVAHVKSELKKKEETMANLEKKLKESRTAITKTAQRNNINKG 892
Cdd:TIGR00606 858 QIQHLKSKTNELKSeklQIGTNlqrrqqfEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNK 937
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 893 SpvgahgGSKEVAVMKDKIKLLEGQIKLKETALESSsnmfieKEKNLKNRieelETKLDQNSQEMSENELLNGQENEDIG 972
Cdd:TIGR00606 938 K------AQDKVNDIKEKVKNIHGYMKDIENKIQDG------KDDYLKQK----ETELNTVNAQLEECEKHQEKINEDMR 1001
|
....*...
gi 15221736 973 VLVAEIES 980
Cdd:TIGR00606 1002 LMRQDIDT 1009
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
534-755 |
1.82e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 48.29 E-value: 1.82e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 534 DVTELENQVESLEAELKKQSEEFSESLCRIKELESQMETLEEEMEKqaqvFEADIDavtrgkvEQEQRAIQAEETLRKtR 613
Cdd:COG3883 24 ELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDK----LQAEIA-------EAEAEIEERREELGE-R 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 614 WKNASVAGKLQDEFKRL--SEQMDSMFTSNEkmAMKAMTEANelrmqkrqleemiKDANDELRANQAEYEAKLHELSEKL 691
Cdd:COG3883 92 ARALYRSGGSVSYLDVLlgSESFSDFLDRLS--ALSKIADAD-------------ADLLEELKADKAELEAKKAELEAKL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15221736 692 sfktSQMERMLENLDEKSNEIDNQKRHEEDVTANLNQEIKILKEEIENLKKNQDSLMLQAEQAE 755
Cdd:COG3883 157 ----AELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAA 216
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
681-905 |
1.94e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 48.29 E-value: 1.94e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 681 EAKLHELSEKLSFKTSQMERMLENLDEKSNEIDnqkrheedvtaNLNQEIKILKEEIENLKKNQDSLmlqAEQAENLRVD 760
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELE-----------ELNEEYNELQAELEALQAEIDKL---QAEIAEAEAE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 761 LEKTKKSVMEAEASLQRENMKKIELE------------SKISLMRKESESLAAELQVIKLAKDEKETAISLLQTELETVR 828
Cdd:COG3883 81 IEERREELGERARALYRSGGSVSYLDvllgsesfsdflDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELE 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15221736 829 SQCDDLKHSLSENDLEMEKHKKQVAHVKSELKKKEETMANLEKKLKESRTAITKTAQRNNINKGSPVGAHGGSKEVA 905
Cdd:COG3883 161 ALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAA 237
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
476-886 |
1.95e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 48.61 E-value: 1.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 476 NEIEIYKRDKDELEIQMEQLALDYEILKQQNHDISyklEQSQLQEQLKIQYECSSSLVDVTELENQVESLEAELK---KQ 552
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAELQEELEELEEELE---ELEAELEELREELEKLEKLLQLLPLYQELEALEAELAelpER 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 553 SEEFSESLCRIKELESQMETLEEEMEKQAQVFEADIDAVTRGKVEQEQRAIQAEETLRKTRWKNASVAGKLQDEFKRLSE 632
Cdd:COG4717 148 LEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEE 227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 633 QMDSMFTSNEKMAMKAMTEANELRMQKRQLEEMIKDANDELRANQAEYEAKLHELSEKLSFKTSQMERMLENLDEKSNEI 712
Cdd:COG4717 228 ELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEEL 307
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 713 DNQKRHEEDVTANLNQEIKILKEEIENLKKNQDSLMLQAEQAENLRVDLEKTKKSV------MEAEASLQRENMKKIELE 786
Cdd:COG4717 308 QALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELqleeleQEIAALLAEAGVEDEEEL 387
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 787 SKISLMRKESESLAAELQVIK--LAKDEKETAISLLQTELETVRSQCDDLKHSLSENDLEMEKHKKQVAHVKSELKK--K 862
Cdd:COG4717 388 RAALEQAEEYQELKEELEELEeqLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQleE 467
|
410 420
....*....|....*....|....
gi 15221736 863 EETMANLEKKLKESRTAITKTAQR 886
Cdd:COG4717 468 DGELAELLQELEELKAELRELAEE 491
|
|
| PLN03229 |
PLN03229 |
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional |
611-970 |
3.05e-05 |
|
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Pssm-ID: 178768 [Multi-domain] Cd Length: 762 Bit Score: 47.93 E-value: 3.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 611 KTRWKNASVAGKLQDEFKRLSEQMDSMFTSNEKMAMKAMTEAnelrmqkrqLEEMIKDANDELrANQAE---YEAKLHEL 687
Cdd:PLN03229 422 KKREAVKTPVRELEGEVEKLKEQILKAKESSSKPSELALNEM---------IEKLKKEIDLEY-TEAVIamgLQERLENL 491
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 688 SEKLSFKTSQMERMLENLDEKSNEID---NQKRHEEDVTANLNQEIKILKEEIEnlkknQDSLMLQAEQAENLRVDLEKT 764
Cdd:PLN03229 492 REEFSKANSQDQLMHPVLMEKIEKLKdefNKRLSRAPNYLSLKYKLDMLNEFSR-----AKALSEKKSKAEKLKAEINKK 566
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 765 KKSVMEAEASlqRENMKKIELESKISLMRKESESLAAELQVIKLAKDEKETAI-SLLQT---ELETVRSQCDDLKHSLSE 840
Cdd:PLN03229 567 FKEVMDRPEI--KEKMEALKAEVASSGASSGDELDDDLKEKVEKMKKEIELELaGVLKSmglEVIGVTKKNKDTAEQTPP 644
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 841 NDLemekhKKQVAHVKSELKKKEETMAN---LEKKLKESRTAITKtaqrnninkgspvgahGGSKEVAVMKDKIKLLEGQ 917
Cdd:PLN03229 645 PNL-----QEKIESLNEEINKKIERVIRssdLKSKIELLKLEVAK----------------ASKTPDVTEKEKIEALEQQ 703
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 15221736 918 IKLKETALESSSNMfIEKEKNLKNRIEELETKLDQNSQEMSENELLNGQENED 970
Cdd:PLN03229 704 IKQKIAEALNSSEL-KEKFEELEAELAAARETAAESNGSLKNDDDKEEDSKED 755
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
394-707 |
3.09e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.09 E-value: 3.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 394 RLQL-EKTQESNSELILAVQDLEEMLEEKSKEGADNIEESMRrscrsetdedDHDQKALEDLVKKHVDAKDTHILEQKIT 472
Cdd:COG3206 102 KLNLdEDPLGEEASREAAIERLRKNLTVEPVKGSNVIEISYT----------SPDPELAAAVANALAEAYLEQNLELRRE 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 473 DLYNEIEIYKRDKDELEIQMEQLALDYEILKQQNHDISYKLEQSQLQEQLkiqyecssslvdvTELENQVESLEAELkkq 552
Cdd:COG3206 172 EARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLSEEAKLLLQQL-------------SELESQLAEARAEL--- 235
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 553 seefseslcriKELESQMETLEEEMEKQAQVFEADIDAVTRGKVEQEQRAIQAEETLRKTRWK-NASVAGKLQDEFKRLS 631
Cdd:COG3206 236 -----------AEAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAELSARYTpNHPDVIALRAQIAALR 304
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 15221736 632 EQMDSMftsNEKMAMKAMTEANELRMQKRQLEEMIKDANDELrANQAEYEAKLHELSEKLSFKTSQMERMLENLDE 707
Cdd:COG3206 305 AQLQQE---AQRILASLEAELEALQAREASLQAQLAQLEARL-AELPELEAELRRLEREVEVARELYESLLQRLEE 376
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
628-851 |
3.25e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.84 E-value: 3.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 628 KRLSEQMDSMFTSNEKMAMKAMTEANELRMQKRqleemikdandELRANQAEYEAKLHELsEKLSFKTSQMERMLENLDE 707
Cdd:COG4717 49 ERLEKEADELFKPQGRKPELNLKELKELEEELK-----------EAEEKEEEYAELQEEL-EELEEELEELEAELEELRE 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 708 KSNEIDNQKRHEEDVtanlnQEIKILKEEIENLKKNQDSLMLQAEQAENLRVDLEKTKKSVMEAEASLQRenmkkieles 787
Cdd:COG4717 117 ELEKLEKLLQLLPLY-----QELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEE---------- 181
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15221736 788 kisLMRKESESLAAELQVIKLAKDEKETAISLLQTELETVRSQCDDLKHSLSENDLEMEKHKKQ 851
Cdd:COG4717 182 ---LLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALE 242
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
539-814 |
3.74e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 47.81 E-value: 3.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 539 ENQVESLEAE-LKKQSEEFSESLCRIKELESQMETLEEEMEKQAQVF-EADIDAVTRgkvEQEQRAIQAEETLRKT-RWK 615
Cdd:pfam17380 290 QEKFEKMEQErLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYaEQERMAMER---ERELERIRQEERKRELeRIR 366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 616 NASVA---------GKLQDEFKRLSEQMDSMFTSNEKMAMKAMTEANELRMQKRQLEEMIKDAND----ELRANQAEYEA 682
Cdd:pfam17380 367 QEEIAmeisrmrelERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEarqrEVRRLEEERAR 446
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 683 KLHELSEKLSFKTSQMERMLENLDEKSNEIDNQKRHEEDVTANLNQEIKILKEEIENLKKN---------------QDSL 747
Cdd:pfam17380 447 EMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAmieeerkrkllekemEERQ 526
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 15221736 748 MLQAEQAENLRVDLEKTKKSVMEAEASLQRENMKKIELESKISLMRKESESLAaelQVIKLAKDEKE 814
Cdd:pfam17380 527 KAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRLEAMEREREMMR---QIVESEKARAE 590
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
541-742 |
3.81e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.99 E-value: 3.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 541 QVESLEAELKKQSEEFSESLCRIKELESQMETLEE---EMEKQAQVFEADIDAvtrGKVEQEQRAIQAE-ETLRKTrwkn 616
Cdd:COG4913 611 KLAALEAELAELEEELAEAEERLEALEAELDALQErreALQRLAEYSWDEIDV---ASAEREIAELEAElERLDAS---- 683
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 617 asvagklQDEFKRLSEQMDsmftsnekmamKAMTEANELRMQKRQLEEMIKDANDELRANQAEYEAKLHELSEKLSFKTS 696
Cdd:COG4913 684 -------SDDLAALEEQLE-----------ELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARL 745
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 15221736 697 QMErmlENLDEKSNEIDnQKRHEEDVTANLNQEIKILKEEIENLKK 742
Cdd:COG4913 746 ELR---ALLEERFAAAL-GDAVERELRENLEERIDALRARLNRAEE 787
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
376-884 |
4.05e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 47.75 E-value: 4.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 376 LEETREELDYEKDRNFNLRLQLEKTQESNSELILAVQDLEEMLEEKSKEGADnIEESMRRScrSETDEDDHDQKALEDLV 455
Cdd:PRK03918 226 LEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEE-LEEKVKEL--KELKEKAEEYIKLSEFY 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 456 KKHVDA-----KDTHILEQKITDL---YNEIEIYKRDKDELEIQMEQLALDYEILK---QQNHDISYKLEQSQLQEQLKI 524
Cdd:PRK03918 303 EEYLDElreieKRLSRLEEEINGIeerIKELEEKEERLEELKKKLKELEKRLEELEerhELYEEAKAKKEELERLKKRLT 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 525 QYECSSSLVDVTELENQVESLEAELKKQSEEFSESLCRIKELESQMETL---------------EEEMEKQAQVFEADID 589
Cdd:PRK03918 383 GLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELkkakgkcpvcgreltEEHRKELLEEYTAELK 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 590 AVTRGKVEQEQRAIQAEETLRKTR---------WKNASVAGKLQDEFKRLSEQMDSMFTSNEKMAMKAMTEANELRMQKR 660
Cdd:PRK03918 463 RIEKELKEIEEKERKLRKELRELEkvlkkeselIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIK 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 661 QLEEMIKDANdELRANQAEYEAKLHELSEKLsfktSQMERMLENLDEKSNEIDNQKRHEEDVTANLNQEIKILKEEIENL 740
Cdd:PRK03918 543 SLKKELEKLE-ELKKKLAELEKKLDELEEEL----AELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELERE 617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 741 KKNQDSLMLQAEQAENlrvDLEKTKKSVMEAEASLQrenmkkiELESKISlmRKESESLAAELQviklakdEKETAISLL 820
Cdd:PRK03918 618 EKELKKLEEELDKAFE---ELAETEKRLEELRKELE-------ELEKKYS--EEEYEELREEYL-------ELSRELAGL 678
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15221736 821 QTELETVRSQCDDLKHSLSENDLEMEKHKKQVAHVKSeLKKKEETMANLEKKLKESRTAITKTA 884
Cdd:PRK03918 679 RAELEELEKRREEIKKTLEKLKEELEEREKAKKELEK-LEKALERVEELREKVKKYKALLKERA 741
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
537-1028 |
4.28e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.45 E-value: 4.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 537 ELENQVESLeaeLKKQSEEFSESLCRIKELESQMETLEEEMEKQAQVfEADIDAVTRGKVEQEQRAIQAEETLRktRWKN 616
Cdd:COG4717 50 RLEKEADEL---FKPQGRKPELNLKELKELEEELKEAEEKEEEYAEL-QEELEELEEELEELEAELEELREELE--KLEK 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 617 ASVAGKLQDEFKRLSEQMDSMftsnekmamkaMTEANELRMQKRQLEEMIKDAnDELRANQAEYEAKLHELSEKLSFKT- 695
Cdd:COG4717 124 LLQLLPLYQELEALEAELAEL-----------PERLEELEERLEELRELEEEL-EELEAELAELQEELEELLEQLSLATe 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 696 SQMERMLENLDEksneidnqkrheedvtanLNQEIKILKEEIENLKKNQDSLMLQAEQAENLRVDLEKTKK--------- 766
Cdd:COG4717 192 EELQDLAEELEE------------------LQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERlkearllll 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 767 --SVMEAEASLQRENMKKIELESKISLMRKESESLAAELQVIKLAKDEKETAISLLQTELETVRSQ-----CDDLKHSLS 839
Cdd:COG4717 254 iaAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEeleelLAALGLPPD 333
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 840 ENDLEMEKHKKQVAHVKSELKKKEEtmANLEKKLKESRTAITKTAQRNNI-NKGSPVGAHGGSKEVAVMKDKIKLLEGQI 918
Cdd:COG4717 334 LSPEELLELLDRIEELQELLREAEE--LEEELQLEELEQEIAALLAEAGVeDEEELRAALEQAEEYQELKEELEELEEQL 411
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 919 KLKETALESSSNMFieKEKNLKNRIEELETKLDQNSQEMSENellngqeNEDIGVLVAEIESLREcngsmEMELKEMRER 998
Cdd:COG4717 412 EELLGELEELLEAL--DEEELEEELEELEEELEELEEELEEL-------REELAELEAELEQLEE-----DGELAELLQE 477
|
490 500 510
....*....|....*....|....*....|
gi 15221736 999 YSEISLRFAEVEGERQQLVMIVRNLKNAKR 1028
Cdd:COG4717 478 LEELKAELRELAEEWAALKLALELLEEARE 507
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
308-983 |
4.57e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 47.41 E-value: 4.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 308 ELELQSLRKQIVKETKRSQDLLREVNSLKQERDSLKEDCERQkvSDKQKGETKTRnrlqfegrdpwvllEETREELdyek 387
Cdd:pfam05483 126 QFENEKVSLKLEEEIQENKDLIKENNATRHLCNLLKETCARS--AEKTKKYEYER--------------EETRQVY---- 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 388 drnFNLRLQLEKTQESNSELILAVQDLEEMLEEKSKEGADNIEESMRRSCRSETDEDDHDQKALEDLVKKHVDAKDTHIL 467
Cdd:pfam05483 186 ---MDLNNNIEKMILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEEYKKEINDKEKQVSLLLIQITEKENKMKDLTFL 262
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 468 EQKITDLYNEIEIYKRDKDEleiQMEQLALDYEILKQQNHDISYKLEQSqLQEQLKIQYECSSSLVDVTELENQVESLEA 547
Cdd:pfam05483 263 LEESRDKANQLEEKTKLQDE---NLKELIEKKDHLTKELEDIKMSLQRS-MSTQKALEEDLQIATKTICQLTEEKEAQME 338
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 548 ELKKQSEEFSeslCRIKELESQMETLEEEMEKQAQVFEADIDAVTRGKVEQEQRAIQAEETLRKTRWKNASVagklqDEF 627
Cdd:pfam05483 339 ELNKAKAAHS---FVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVEL-----EEL 410
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 628 KRLSEQMDSMFTSNEkmamkamteanelrmQKRQLEEMIKDANDELRANQAEYEAKLHELSEKLSFKTSQMERMLENLDE 707
Cdd:pfam05483 411 KKILAEDEKLLDEKK---------------QFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVED 475
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 708 KSNEIDNQKRHEEDVTANLNQ---EIKILKEEIEN----LKKNQDSLMLQAEQAENLRVDLEKTKKSVMEAEASLQ--RE 778
Cdd:pfam05483 476 LKTELEKEKLKNIELTAHCDKlllENKELTQEASDmtleLKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELEsvRE 555
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 779 NMKKIELESKISLMRKESESLAAELQVIKlakdeKETAISLLQTELETVRSQCDDLKHSLSENDLEMEKHKKQVAHVKSE 858
Cdd:pfam05483 556 EFIQKGDEVKCKLDKSEENARSIEYEVLK-----KEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQ 630
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 859 LKKKEETMANLEKKLKESRTA---ITKTAQRN-NINKGSPVGAHGGSKEVAVMKDKIKLLEGQIKLKETALESSSNMFIE 934
Cdd:pfam05483 631 LNAYEIKVNKLELELASAKQKfeeIIDNYQKEiEDKKISEEKLLEEVEKAKAIADEAVKLQKEIDKRCQHKIAEMVALME 710
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|
gi 15221736 935 KEKNLKNRI-EELETKLDQNSQEMSENELLNGQENEDIGVLVAEIESLRE 983
Cdd:pfam05483 711 KHKHQYDKIiEERDSELGLYKNKEQEQSSAKAALEIELSNIKAELLSLKK 760
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
183-604 |
1.27e-04 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 46.05 E-value: 1.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 183 SHEEGPFGKAARF-AELRRRASIESDSTMSSSGSVIEPNTPEEVAKPLRHPTKHLHSAKslfEEPSRISESEWSGSSDHG 261
Cdd:PLN02939 11 SHGCGPIRSRAPFyLPSRRRLAVSCRARRRGFSSQQKKKRGKNIAPKQRSSNSKLQSNT---DENGQLENTSLRTVMELP 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 262 ISSTDDSTNSSNDIVARDTAINSSDEDEVEKLKNE----------LVGLTRQADLSELELQSLRKQIVKETKR----SQD 327
Cdd:PLN02939 88 QKSTSSDDDHNRASMQRDEAIAAIDNEQQTNSKDGeqlsdfqledLVGMIQNAEKNILLLNQARLQALEDLEKilteKEA 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 328 LLREVNSLKQErdsLKEDCERQKVSDKQKGET--------KTRNRLQFEGRDPWVLLEETREELDYEKDRNFNLRLQLEK 399
Cdd:PLN02939 168 LQGKINILEMR---LSETDARIKLAAQEKIHVeileeqleKLRNELLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQF 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 400 TQESNSElilaVQDLEEMLEEKSKEgadnieesmrrscRSETDeddhdqKALEDLVKKHVDAKD--THILEQKITDLYNE 477
Cdd:PLN02939 245 LKAELIE----VAETEERVFKLEKE-------------RSLLD------ASLRELESKFIVAQEdvSKLSPLQYDCWWEK 301
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 478 IEIYKRDKDELEIQMEQLALdyeiLKQQNHDISYKLEQsqLQEQLKiqyecssslvdvtelenqveslEAELKKQSEEFS 557
Cdd:PLN02939 302 VENLQDLLDRATNQVEKAAL----VLDQNQDLRDKVDK--LEASLK----------------------EANVSKFSSYKV 353
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|..
gi 15221736 558 ESLC-RIKELESQMETLEEEMEKQAQVFEADI----DAVTRGKVEQEQRAIQ 604
Cdd:PLN02939 354 ELLQqKLKLLEERLQASDHEIHSYIQLYQESIkefqDTLSKLKEESKKRSLE 405
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
493-779 |
1.82e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.39 E-value: 1.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 493 EQLALDYEILKQQNhdiSYKLEQSQLQEQLKIQYECSSSLVDVTelenqVESLEAELKKQ-SEEFSESLcrikeLESQME 571
Cdd:COG3206 101 DKLNLDEDPLGEEA---SREAAIERLRKNLTVEPVKGSNVIEIS-----YTSPDPELAAAvANALAEAY-----LEQNLE 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 572 TLEEEMEKQAQVFEADIDavtrgkvEQEQRAIQAEETLRKTRWKNASVAgkLQDEFKRLSEQMDSMftsnEKMAMKAMTE 651
Cdd:COG3206 168 LRREEARKALEFLEEQLP-------ELRKELEEAEAALEEFRQKNGLVD--LSEEAKLLLQQLSEL----ESQLAEARAE 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 652 ANELRMQKRQLEEMIKDAND------------ELRANQAEYEAKLHELSEKLSFKTSQMERMLENLDEKSNEIDNQKRhe 719
Cdd:COG3206 235 LAEAEARLAALRAQLGSGPDalpellqspviqQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQ-- 312
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 720 eDVTANLNQEIKILKEEIENLKKNQDSLMLQAEQAENLRVDLektkkSVMEAEASLQREN 779
Cdd:COG3206 313 -RILASLEAELEALQAREASLQAQLAQLEARLAELPELEAEL-----RRLEREVEVAREL 366
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
642-969 |
1.83e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 45.73 E-value: 1.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 642 EKMAMKAMTEANELRMQKRQLEEMIKDANDELRANQAEYEAKLHELSEKLSFK----TSQMERMLENLDEKSNEIDNQKR 717
Cdd:pfam02463 179 IEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYlklnEERIDLLQELLRDEQEEIESSKQ 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 718 HEEDVTANLNQEIKILKEEIENLKKNQDSLMLQAEQAENLRVDLEKTKKSVMEAEASLQRENMKKIELESKISLMRKESE 797
Cdd:pfam02463 259 EIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIE 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 798 SLAAELQVIKLAKDEKETAISLLQTELETVRSQCDDLkhslsendleMEKHKKQVAHVKSELKKKEETMANLEKKLKESR 877
Cdd:pfam02463 339 ELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEEL----------LAKKKLESERLSSAAKLKEEELELKSEEEKEAQ 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 878 TAITKTAQRNNINKgspVGAHGGSKEVAVMKDKIKLLEGQIKLKETALESSSNMFIEKEKNLKnRIEELETKLDQNSQEM 957
Cdd:pfam02463 409 LLLELARQLEDLLK---EEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELK-KSEDLLKETQLVKLQE 484
|
330
....*....|..
gi 15221736 958 SENELLNGQENE 969
Cdd:pfam02463 485 QLELLLSRQKLE 496
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
284-740 |
1.83e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.42 E-value: 1.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 284 SSDEDEVEKLKNELVGLTRQADLSELELQSLRKQIVKETKRSQDLLREVNSLKQERDSLKEDCERQKVSDKQKGETKTRN 363
Cdd:PRK02224 268 AETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESL 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 364 R------------LQFEGRDPWVLLEETREELDYEKDRNFNLRLQLEKTQESNSELILAVQDLEEMLEEKSKEGAD-NIE 430
Cdd:PRK02224 348 RedaddleeraeeLREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDElRER 427
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 431 ESMRRSCRSETDEDDHDQKALEDLVK-----------KHVDAKDTHilEQKITDLYNEIEIYKRDKDELEIQMEQLaldy 499
Cdd:PRK02224 428 EAELEATLRTARERVEEAEALLEAGKcpecgqpvegsPHVETIEED--RERVEELEAELEDLEEEVEEVEERLERA---- 501
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 500 EILKQQNHDISYKLEQSQLQEQLKIQYE---------CSSSLVDVTELENQVESLEAELKKQSEEFSESLCRIKELESQM 570
Cdd:PRK02224 502 EDLVEAEDRIERLEERREDLEELIAERRetieekrerAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKL 581
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 571 ETLEEEMEKQAQVfeadidavtrgkveqeqraiqaeETLRKTRWKNASVAGKLQDEFKRLSEQMDSmftSNEKMAmkamt 650
Cdd:PRK02224 582 AELKERIESLERI-----------------------RTLLAAIADAEDEIERLREKREALAELNDE---RRERLA----- 630
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 651 eanELRMQKRQLEEMIKDAN-DELRANQAEYEAKLHELSEKLSFKTSQMERMLENLDEKSNEIDNQK--RHEEDVTANLN 727
Cdd:PRK02224 631 ---EKRERKRELEAEFDEARiEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEelRERREALENRV 707
|
490
....*....|...
gi 15221736 728 QEIKILKEEIENL 740
Cdd:PRK02224 708 EALEALYDEAEEL 720
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
431-997 |
2.06e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 45.81 E-value: 2.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 431 ESMRRSCRSETDEDDHDQKALEDLVKKHVDAKDTHILEQKITDLYNEIEIYKRDKDEL--------EIQMEQLALDyeil 502
Cdd:TIGR01612 1135 EEIKKKSENYIDEIKAQINDLEDVADKAISNDDPEEIEKKIENIVTKIDKKKNIYDEIkkllneiaEIEKDKTSLE---- 1210
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 503 KQQNHDISYKLEQSQLQEQlKIQYECSSSLVDVTELENQVESLEaELKKQSEEFSESLCRIKELESQMETL--EEEMEKQ 580
Cdd:TIGR01612 1211 EVKGINLSYGKNLGKLFLE-KIDEEKKKSEHMIKAMEAYIEDLD-EIKEKSPEIENEMGIEMDIKAEMETFniSHDDDKD 1288
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 581 AQVFEADIDAVTRGKVEQEQRAIQ--AEET----LRKTRWKNASVAGKLQDEFKRLSEQMDSMFTSNEKMAMKAMTeaNE 654
Cdd:TIGR01612 1289 HHIISKKHDENISDIREKSLKIIEdfSEESdindIKKELQKNLLDAQKHNSDINLYLNEIANIYNILKLNKIKKII--DE 1366
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 655 LRMQKRQLEEMIKDANDELranqAEYEAKLHELSEKLSFKT--SQMERMLE--NLDEKSNEIDNQKRHEEDVTANLNQEI 730
Cdd:TIGR01612 1367 VKEYTKEIEENNKNIKDEL----DKSEKLIKKIKDDINLEEckSKIESTLDdkDIDECIKKIKELKNHILSEESNIDTYF 1442
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 731 KILKEEIENL-----------KKNQDSLMLQAEQAEN--------LRVDLEKTKKSVMEAEaslqrENMKKIElesKISL 791
Cdd:TIGR01612 1443 KNADENNENVlllfkniemadNKSQHILKIKKDNATNdhdfnineLKEHIDKSKGCKDEAD-----KNAKAIE---KNKE 1514
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 792 MRKESESLAAELqVIKLAKDEKETAISLLQTELETVRSQCDDLKHSLSendLEMEKHKKQVAHVKSELKKKEETMANLEK 871
Cdd:TIGR01612 1515 LFEQYKKDVTEL-LNKYSALAIKNKFAKTKKDSEIIIKEIKDAHKKFI---LEAEKSEQKIKEIKKEKFRIEDDAAKNDK 1590
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 872 KLKES---RTAI----TKTAQRNNINKGSpvgaHGGSKEVAVMKDKIKLLE---GQIKLKETALESSS-NMFIEKEKNLK 940
Cdd:TIGR01612 1591 SNKAAidiQLSLenfeNKFLKISDIKKKI----NDCLKETESIEKKISSFSidsQDTELKENGDNLNSlQEFLESLKDQK 1666
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*....
gi 15221736 941 NRIEELETKLDQNSQEMS--ENELLNGQENEDIGVlvaeIESLRECNGSMEMELKEMRE 997
Cdd:TIGR01612 1667 KNIEDKKKELDELDSEIEkiEIDVDQHKKNYEIGI----IEKIKEIAIANKEEIESIKE 1721
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
642-788 |
2.57e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 44.77 E-value: 2.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 642 EKMAMKAMTEANELRmqkrqlEEMIKDANDELRANQAEYEAKLHELSEKLSFKTSQMERMLENLDEKSNEIDNQKRHEED 721
Cdd:PRK12704 41 KRILEEAKKEAEAIK------KEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEK 114
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 15221736 722 VTANLNQEIKILKEEIENLKKNQDSLMLQAEQAENLRVD------LEKTKKSVMEAEASLQRENMKKIELESK 788
Cdd:PRK12704 115 KEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEeakeilLEKVEEEARHEAAVLIKEIEEEAKEEAD 187
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
433-886 |
2.91e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 44.89 E-value: 2.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 433 MRRSCRSETDEDDHDQKALEDLVKKHvdakdtHILEQKITDLYNEIEIYKRDKDELEIQMEQLALDYEILKQQNHDIsyK 512
Cdd:PRK01156 188 LEEKLKSSNLELENIKKQIADDEKSH------SITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYESEI--K 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 513 LEQSQLQEQLKIQYECSSSLVDVTELENQVESLEAE-------LKKQSEEFSESLcriKELESQMETLEEEMEKqAQVFE 585
Cdd:PRK01156 260 TAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNyindyfkYKNDIENKKQIL---SNIDAEINKYHAIIKK-LSVLQ 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 586 ADIDAVTRGKVEQEQRAIQAEEtLRKTRWKNASVAGKLQD----------EFKRLSEQMDSMFTSNEKMAMKAMTEANEL 655
Cdd:PRK01156 336 KDYNDYIKKKSRYDDLNNQILE-LEGYEMDYNSYLKSIESlkkkieeyskNIERMSAFISEILKIQEIDPDAIKKELNEI 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 656 RMQKRQLEEMIKDAN---DELRANQAEYEAKLHELSEK-------LSFKTSQMERMLENLDEKSNEIDNQKRHEEDVTAN 725
Cdd:PRK01156 415 NVKLQDISSKVSSLNqriRALRENLDELSRNMEMLNGQsvcpvcgTTLGEEKSNHIINHYNEKKSRLEEKIREIEIEVKD 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 726 LNQEIKILKEEIENL-KKNQDSLMLQAEQAENLRVDLEKTKKSVME-AEASLQRENMKKIELESKISLMRKESESLAAEL 803
Cdd:PRK01156 495 IDEKIVDLKKRKEYLeSEEINKSINEYNKIESARADLEDIKIKINElKDKHDKYEEIKNRYKSLKLEDLDSKRTSWLNAL 574
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 804 QVIKL--------AKDEKETAISLLQTELETVRSQCDDLKHSLSENDLEMEKHKKQVAHVKSELKKKEETMANLEKKLKE 875
Cdd:PRK01156 575 AVISLidietnrsRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKILIEKLRGKIDN 654
|
490
....*....|.
gi 15221736 876 SRTAITKTAQR 886
Cdd:PRK01156 655 YKKQIAEIDSI 665
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
746-958 |
3.32e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 3.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 746 SLMLQAEQAENLRVDLEKTKKSVMEAEASLQRENMKKIELESKISLMRKESESLAAELQVIKLAKDEKETAISLLQTELE 825
Cdd:COG4942 14 AAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 826 TVRSQCDDLKHSL---------------------SENDLEMEKHKKQVAHVKSELKKKEETMANLEKKLKESRTAITKTA 884
Cdd:COG4942 94 ELRAELEAQKEELaellralyrlgrqpplalllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAER 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 15221736 885 QRNNINKGSPVGAHggsKEVAVMKDKIKLLEGQIKLKETALESSSNMFIEKEKNLKNRIEELETKLDQNSQEMS 958
Cdd:COG4942 174 AELEALLAELEEER---AALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTP 244
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
541-879 |
3.95e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 44.75 E-value: 3.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 541 QVESLEAELKKQSEEFSESLCRIKELESQMETLEEEMEKQAQVFEADIDAVTRGKVEQEQRAIQAEETLRKTRWKNAsva 620
Cdd:PTZ00121 1210 EERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKA--- 1286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 621 gklqDEFKRLSEQMDSMFTSNEKMAMKAMTEANELRMQKRQLEEMIKDAND-ELRANQAEYEAKLHELSEKLSFKTSQME 699
Cdd:PTZ00121 1287 ----EEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAaKKKAEEAKKAAEAAKAEAEAAADEAEAA 1362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 700 RMLENLDEKSNEIDNQKRHEEDVTANLNQEIKILKEEIENLKKNQDSLMLQAE---QAENLRVDLEKTKKSvmeAEASLQ 776
Cdd:PTZ00121 1363 EEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAakkKADEAKKKAEEKKKA---DEAKKK 1439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 777 RENMKKIELESKISLMRKESESLAAELQVIKLAKDEKETA-----ISLLQTELETVRSQCDDLKHSLSENDLEMEKHKKQ 851
Cdd:PTZ00121 1440 AEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAeeakkADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAE 1519
|
330 340
....*....|....*....|....*....
gi 15221736 852 VAHVKSELKKKEET-MANLEKKLKESRTA 879
Cdd:PTZ00121 1520 EAKKADEAKKAEEAkKADEAKKAEEKKKA 1548
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
531-747 |
4.61e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.52 E-value: 4.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 531 SLVDVTEL-------ENQVESLEAELKKQSEEFSESLCRIKELESQMETLE---------EEMEKQAQVFEADIDAVTRG 594
Cdd:COG4913 205 PIGDLDDFvreymleEPDTFEAADALVEHFDDLERAHEALEDAREQIELLEpirelaeryAAARERLAELEYLRAALRLW 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 595 KVEQEQRAIQAEETLRKTRWKnasvagKLQDEFKRLSEQMDsmftsnekmamKAMTEANELRMQKRQ--------LEEMI 666
Cdd:COG4913 285 FAQRRLELLEAELEELRAELA------RLEAELERLEARLD-----------ALREELDELEAQIRGnggdrleqLEREI 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 667 KDANDEL---RANQAEYEAKLHELSEKL-----SFKT--SQMERMLENLDEKSNEIDNQKRHEEDVTANLNQEIKILKEE 736
Cdd:COG4913 348 ERLERELeerERRRARLEALLAALGLPLpasaeEFAAlrAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAE 427
|
250
....*....|.
gi 15221736 737 IENLKKNQDSL 747
Cdd:COG4913 428 IASLERRKSNI 438
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
702-1027 |
5.26e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.90 E-value: 5.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 702 LENLDEKSNEIDNQKRHEEDVTANLNQEIKILKEEIENLKKNQDSLMLQAEQAENLRVDLEKTKKSVMEAEASLQRENMK 781
Cdd:PRK03918 181 LEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEK 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 782 KIELESKISLMRKESESLAAELQVIKLAKDEKETAISL-------------LQTELETVRSQCDDLKHSLSendlEMEKH 848
Cdd:PRK03918 261 IRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLsefyeeyldelreIEKRLSRLEEEINGIEERIK----ELEEK 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 849 KKQVAHVKSELKKKEETMANLEKKLKESRTAITKTAQRNNINKgspvgahggsKEVAVMKDKIKLLEGQIKLKETALESS 928
Cdd:PRK03918 337 EERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKK----------RLTGLTPEKLEKELEELEKAKEEIEEE 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 929 SNMFIEKEKNLKNRIEELETKLDQNSQEMSE-----NELLNGQENEDIGVLVAEIESLREcngsmemELKEMRERYSEIS 1003
Cdd:PRK03918 407 ISKITARIGELKKEIKELKKAIEELKKAKGKcpvcgRELTEEHRKELLEEYTAELKRIEK-------ELKEIEEKERKLR 479
|
330 340
....*....|....*....|....
gi 15221736 1004 LRFAEVEGERQQLVMIVRNLKNAK 1027
Cdd:PRK03918 480 KELRELEKVLKKESELIKLKELAE 503
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
646-875 |
7.12e-04 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 43.35 E-value: 7.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 646 MKAMTEANELRMQKRQLEEMIKDANDELRANQAEYEAKLHELSEKLSFKTSQMERMLENLDEKSNEIDNQKRHEEDVTAN 725
Cdd:pfam07888 47 LQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEELSEEKDALLAQRAA 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 726 LNQEIKILKEEIENLkknqdslmlqAEQAENLRVDLEKTKKSVMEAEASLQRENMKKIELESKISLMRKESESLAAELQV 805
Cdd:pfam07888 127 HEARIRELEEDIKTL----------TQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRSLSKEFQE 196
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 806 IKLAKDEKETAISLLQTELETVRSQCDdlkhSLSENDLEMEKHKKQVAHVKSELKKKEETMANLEKKLKE 875
Cdd:pfam07888 197 LRNSLAQRDTQVLQLQDTITTLTQKLT----TAHRKEAENEALLEELRSLQERLNASERKVEGLGEELSS 262
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
303-595 |
7.63e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.21 E-value: 7.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 303 QADLSELELQSLRKQIVKETKRSQDLLREVNSLKQERDSLkedceRQKVSDKQKGETKTRNRLQfegrdpwvLLEETREE 382
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAAL-----ERRIAALARRIRALEQELA--------ALEAELAE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 383 LDYEKDRnfnLRLQLEKTQESNSELILAVQDLEEMLEEKSKEGADNIEESMRRScrsetdeddhdqkaledlvkkhvdak 462
Cdd:COG4942 88 LEKEIAE---LRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRL-------------------------- 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 463 dtHILEQKITDLYNEIEIYKRDKDELEIQMEQLALDYEILKQQnhdisyKLEQSQLQEQLKIQyecssslvdVTELENQV 542
Cdd:COG4942 139 --QYLKYLAPARREQAEELRADLAELAALRAELEAERAELEAL------LAELEEERAALEAL---------KAERQKLL 201
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 15221736 543 ESLEAELKKQSEEFSESLCRIKELESQMETLEEEMEKQAQVFEADIDAVTRGK 595
Cdd:COG4942 202 ARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAALKGK 254
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
301-871 |
8.60e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 43.63 E-value: 8.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 301 TRQadlsELELQSLRKQIVKETKRSQDLLREVNSLKQERDSLKEdcERQKVSDKQKGETK-------TRNRLQFEGRDPW 373
Cdd:pfam01576 1 TRQ----EEEMQAKEEELQKVKERQQKAESELKELEKKHQQLCE--EKNALQEQLQAETElcaeaeeMRARLAARKQELE 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 374 VLLEETREELDYEKDRNFNLRLQLEKTQESnselilaVQDLEEMLEEkskegadniEESMRRSCRSETDEDDHDQKALED 453
Cdd:pfam01576 75 EILHELESRLEEEEERSQQLQNEKKKMQQH-------IQDLEEQLDE---------EEAARQKLQLEKVTTEAKIKKLEE 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 454 LVKKHVDAKDTHILEQKI-TDLYNEIEIYKRDKDELEIQMEQLALDYEILKQQNHDISYKLEQS-QLQEQLKIQYECSSS 531
Cdd:pfam01576 139 DILLLEDQNSKLSKERKLlEERISEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGrQELEKAKRKLEGEST 218
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 532 LV--DVTELENQVESLEAELKKQSEEFSESLCR--------------IKELESQMETLEEEM----------EKQAQVFE 585
Cdd:pfam01576 219 DLqeQIAELQAQIAELRAQLAKKEEELQAALARleeetaqknnalkkIRELEAQISELQEDLeseraarnkaEKQRRDLG 298
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 586 ADIDAVtRGKVEQEQRAIQAEETLRKTRWKNASVAGKLQDEFKRLSEQMDSMFTSNEKMAMKAMTEANELRMQKRQLEEM 665
Cdd:pfam01576 299 EELEAL-KTELEDTLDTTAAQQELRSKREQEVTELKKALEEETRSHEAQLQEMRQKHTQALEELTEQLEQAKRNKANLEK 377
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 666 IKDANDELRANQAEYEAKLHELSEKLSFKTSQMERMLENLDEKSNEIDNQKrheedvtANLNQEIKILKEEIENLkknqD 745
Cdd:pfam01576 378 AKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQR-------AELAEKLSKLQSELESV----S 446
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 746 SLMLQAE-QAENLRVDLEKTKKSVMEAEASLQRENMKKIELESKISLMRKESESLAAELQVIKLAKDEKETAISLLQTEL 824
Cdd:pfam01576 447 SLLNEAEgKNIKLSKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQL 526
|
570 580 590 600
....*....|....*....|....*....|....*....|....*..
gi 15221736 825 ETVRSQCDDLKHSLSENDLEMEKHKKQVAHVKSELKKKEETMANLEK 871
Cdd:pfam01576 527 SDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEK 573
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
650-803 |
8.74e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.22 E-value: 8.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 650 TEANELRMQKRQLEEMIKDANDELRANQAEYEAKLHELSE------KLSFKTSQMERMLENLDEKSNEIDNQKRHEedvt 723
Cdd:COG1579 17 SELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDlekeikRLELEIEEVEARIKKYEEQLGNVRNNKEYE---- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 724 aNLNQEIKILKEEIENLKKNQDSLMLQAEQAENLRVDLEKTKKSVMEAEASLQRENMKKI-ELESKISLMRKESESLAAE 802
Cdd:COG1579 93 -ALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELaELEAELEELEAEREELAAK 171
|
.
gi 15221736 803 L 803
Cdd:COG1579 172 I 172
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
280-741 |
1.36e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 42.70 E-value: 1.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 280 TAINSSDEDEVEKLKNELVGLTRQADLSELELQSLRKQIVKETKRSQDLLREVNSLKQERDSlkedcerqkvsdkqkget 359
Cdd:TIGR04523 245 TTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQ------------------ 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 360 ktrnrlqfegrdpwVLLEETREELDYEKDRNFNLRLQLEKTQESNSELILAVQDLEEMLEEKSKEGAdnieesmrrscrS 439
Cdd:TIGR04523 307 --------------DWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENS------------E 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 440 ETDEDDHDQKALEDLVKKHVDAKDT-HILEQKITDLYNEIEIYKRDKDELEIQMEQLALDYEILKQQNHDIsykleqsqL 518
Cdd:TIGR04523 361 KQRELEEKQNEIEKLKKENQSYKQEiKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERL--------K 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 519 QEQLKIQYECSSSLVDVTELENQVESLEAELKKQSEEFSESLCRIKELESQMETLEEEMEKQaqvfEADIDAVTRGKVEQ 598
Cdd:TIGR04523 433 ETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSK----EKELKKLNEEKKEL 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 599 EQRA---IQAEETLRKTRWKNASVAGKLQDEFKRLSEQMDSMFTSNEKMAM-KAMTEANELRMQKRQLEEMIKDANDELR 674
Cdd:TIGR04523 509 EEKVkdlTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLeKEIDEKNKEIEELKQTQKSLKKKQEEKQ 588
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 675 ANQAEYEAKLHELSEKLSFKT---SQMERMLENLDEKSNEIDNQKRHEEDVTANLNQEIKILKEEIENLK 741
Cdd:TIGR04523 589 ELIDQKEKEKKDLIKEIEEKEkkiSSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIR 658
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
389-844 |
1.47e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 42.58 E-value: 1.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 389 RNFNLRLQLEKTQESNSELILAVQDLEEMLEEKSKEGADNIEESMRRSCRSETDEDDHDqkaledlvkkhvdaKDTHILE 468
Cdd:PLN02939 40 RGFSSQQKKKRGKNIAPKQRSSNSKLQSNTDENGQLENTSLRTVMELPQKSTSSDDDHN--------------RASMQRD 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 469 QKITDLYNEIEIYKRDKDEL-EIQMEQLAldyEILKQQNHDIsYKLEQSQLQeqlkiqyecssSLVDVTELENQVESLEA 547
Cdd:PLN02939 106 EAIAAIDNEQQTNSKDGEQLsDFQLEDLV---GMIQNAEKNI-LLLNQARLQ-----------ALEDLEKILTEKEALQG 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 548 ELKKQSEEFSESLCRIK---ELESQMETLEEEMEKQAQvfEADIDAVTRGKVEQeqrAIQAEETLRKTrwKNASvagkLQ 624
Cdd:PLN02939 171 KINILEMRLSETDARIKlaaQEKIHVEILEEQLEKLRN--ELLIRGATEGLCVH---SLSKELDVLKE--ENML----LK 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 625 DEFKRLSEQMDSMFTSNEKMAMkamteanelrmqkrqleemikdandeLRANQAEYEAKLHELSEKLsfktsqmermlen 704
Cdd:PLN02939 240 DDIQFLKAELIEVAETEERVFK--------------------------LEKERSLLDASLRELESKF------------- 280
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 705 ldeksneIDNQkrheEDVTANLNQEIKILKEEIENLKKNQDSLMLQAEQAENLRVDLEKTKKSVMEAEASLQRENMKKIE 784
Cdd:PLN02939 281 -------IVAQ----EDVSKLSPLQYDCWWEKVENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKEANVSKFS 349
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 785 LEsKISLMRKESESLAAELQViklAKDEKETAISLLQTELETVRSQCDDLKHSLSENDLE 844
Cdd:PLN02939 350 SY-KVELLQQKLKLLEERLQA---SDHEIHSYIQLYQESIKEFQDTLSKLKEESKKRSLE 405
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
699-983 |
1.52e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 42.65 E-value: 1.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 699 ERMLENLDEKSNEIDNQKRHEEDVTANLNQEIKILKEEIENLKKNQDSLMLQAEQAENLRVDLEKTKKSvmEAEASLQRE 778
Cdd:pfam02463 169 RKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEE--RIDLLQELL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 779 NMKKIELESKISLMRKESESLAAELQVIKLAK---DEKETAISLLQTELETVRSQCDDLKHSLSENDLEMEKHKKQVAHV 855
Cdd:pfam02463 247 RDEQEEIESSKQEIEKEEEKLAQVLKENKEEEkekKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKA 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 856 KSELKKKEETMANLEKKLKESrtAITKTAQRNNINKGSPVGAHGGSKEVAVMKdKIKLLEGQIKLKETALESSSNMFIEK 935
Cdd:pfam02463 327 EKELKKEKEEIEELEKELKEL--EIKREAEEEEEEELEKLQEKLEQLEEELLA-KKKLESERLSSAAKLKEEELELKSEE 403
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 15221736 936 EKNLKNRIEELETKLDQNSQEMSENELLNGQENEDIGVLVAEIESLRE 983
Cdd:pfam02463 404 EKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKE 451
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
486-1004 |
1.95e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 42.26 E-value: 1.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 486 DELEIQMEQLALDYEILKQQNHDISY-KLEQSQLQEQLKIQYECSSSLVDVTELENQveslEAELKKQSEEFSESLCRIK 564
Cdd:TIGR00618 219 ERKQVLEKELKHLREALQQTQQSHAYlTQKREAQEEQLKKQQLLKQLRARIEELRAQ----EAVLEETQERINRARKAAP 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 565 ELESQMETLEEEMEKQAQVFEADIDAVTRGKVEQEQRAIQAEETLRKTRWKNASVAGKLQDEFKRLSEQmdsmftsnEKM 644
Cdd:TIGR00618 295 LAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEV--------ATS 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 645 AMKAMTEANELRMQKRQLEEMIKDANDELRANQAEYEaKLHELSEKLSFKTSQMERMLENLDEKSNEIDNQKRHEEDVTA 724
Cdd:TIGR00618 367 IREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELD-ILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAA 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 725 NLNQEIKILKEEIENLKKNQDSLMLQAEQAENLRVDLEKTKKSVMEAEASLQRENMKKIELESKISLMRKESeSLAAELQ 804
Cdd:TIGR00618 446 AITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPAR-QDIDNPG 524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 805 VIKLAKDEKETAISLLQTELETVRSQCDDLKHSLSENDLEMEKHKKQVAHVKSELKKKEETMANLEKKLKESRTAITKTA 884
Cdd:TIGR00618 525 PLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLS 604
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 885 qRNNINKGSPVGAHGGSKEVAVMKDKIKLLEGQIKLKETALESSSNMFIEKEKNLKNRIEELETKLDQnSQEMSENELLN 964
Cdd:TIGR00618 605 -EAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLP-KELLASRQLAL 682
|
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 15221736 965 GQENEDIGVLVAEIESLRECNGSM---EMELKEMRERYSEISL 1004
Cdd:TIGR00618 683 QKMQSEKEQLTYWKEMLAQCQTLLrelETHIEEYDREFNEIEN 725
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
532-707 |
2.20e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.06 E-value: 2.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 532 LVDVTELENQVESLEAELKKQSEEfseslcrIKELESQMETLEEEMEKqaqvFEADIDAVTRGKVEQEQRAIQAEEtlRK 611
Cdd:COG1579 9 LLDLQELDSELDRLEHRLKELPAE-------LAELEDELAALEARLEA----AKTELEDLEKEIKRLELEIEEVEA--RI 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 612 TRWKNASVAGKLQDEFKRLSEQMDSM---FTSNEKMAMKAMTEANELRMQKRQLEEMIKDANDELRANQAEYEAKLHELS 688
Cdd:COG1579 76 KKYEEQLGNVRNNKEYEALQKEIESLkrrISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELE 155
|
170
....*....|....*....
gi 15221736 689 EKLSFKTSQMERMLENLDE 707
Cdd:COG1579 156 AELEELEAEREELAAKIPP 174
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
702-883 |
2.58e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.68 E-value: 2.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 702 LENLDEKSNEIDNQKRHEEDVTANLNQEIKILKEEIENLKKnqdslmlqaeqaenlrvDLEKTKKSVMEAEASLQRENMK 781
Cdd:COG1579 12 LQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKT-----------------ELEDLEKEIKRLELEIEEVEAR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 782 KIELESKISLMR--KESESLAAELQVIKLAKDEKETAISLLQTELETVRSQCDDLKHslsendlEMEKHKKQVAHVKSEL 859
Cdd:COG1579 75 IKKYEEQLGNVRnnKEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEA-------ELAELEAELEEKKAEL 147
|
170 180
....*....|....*....|....
gi 15221736 860 KKKEETMANLEKKLKESRTAITKT 883
Cdd:COG1579 148 DEELAELEAELEELEAEREELAAK 171
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
660-766 |
4.49e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 41.00 E-value: 4.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 660 RQLEEMIKdandELRANQAEYEAKLHELseklsfktsqmERMLENLDEKSNEIDNQKRHEedvtANLNQEIKILKEEIEN 739
Cdd:COG2433 416 RRLEEQVE----RLEAEVEELEAELEEK-----------DERIERLERELSEARSEERRE----IRKDREISRLDREIER 476
|
90 100
....*....|....*....|....*..
gi 15221736 740 LKKNQDSLmlqAEQAENLRVDLEKTKK 766
Cdd:COG2433 477 LERELEEE---RERIEELKRKLERLKE 500
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
462-757 |
5.96e-03 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 40.61 E-value: 5.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 462 KDTHILEQKItdlyNEI-EIYKRDKDELEIQMEQLALDYEILKQQNhdisYKLEQSQLQEQLKiqyecssslvdvtELEN 540
Cdd:pfam06160 186 EETDALEELM----EDIpPLYEELKTELPDQLEELKEGYREMEEEG----YALEHLNVDKEIQ-------------QLEE 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 541 QVESLEAELKKqseefseslCRIKELESQMETLEEEMEKQAQVFEADIDAvtRGKVEQEQRAI-----QAEETLRKTRWK 615
Cdd:pfam06160 245 QLEENLALLEN---------LELDEAEEALEEIEERIDQLYDLLEKEVDA--KKYVEKNLPEIedyleHAEEQNKELKEE 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 616 ----------NASVAGKLQDEFKRLSEQMDSMFTSNEKMAMKAMT------EANELRMQKRQLEEMIKDAN--------D 671
Cdd:pfam06160 314 lervqqsytlNENELERVRGLEKQLEELEKRYDEIVERLEEKEVAyselqeELEEILEQLEEIEEEQEEFKeslqslrkD 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 672 ELRANQ--AEYEAKLHELseKLSFKTSQM----ERMLENLDEKSNEIDNQKRHEEDVTAN---LNQEIKILKEEIENLKK 742
Cdd:pfam06160 394 ELEAREklDEFKLELREI--KRLVEKSNLpglpESYLDYFFDVSDEIEDLADELNEVPLNmdeVNRLLDEAQDDVDTLYE 471
|
330
....*....|....*
gi 15221736 743 NQDSLMLQAEQAENL 757
Cdd:pfam06160 472 KTEELIDNATLAEQL 486
|
|
| Filament |
pfam00038 |
Intermediate filament protein; |
468-707 |
7.60e-03 |
|
Intermediate filament protein;
Pssm-ID: 459643 [Multi-domain] Cd Length: 313 Bit Score: 39.52 E-value: 7.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 468 EQKITDLYNEIEIYKRDKDELEIQMEQLALDYEILKQqnhdiSYKLEQSQLQEqlkiqyecssslvdvteLENQVesleA 547
Cdd:pfam00038 53 EKEIEDLRRQLDTLTVERARLQLELDNLRLAAEDFRQ-----KYEDELNLRTS-----------------AENDL----V 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 548 ELKKQSEEfsESLCRIkELESQMETLEEEMEKQAQVFEADIdAVTRGKVEQEQRAIQAE--------ETLRKTRWKNASV 619
Cdd:pfam00038 107 GLRKDLDE--ATLARV-DLEAKIESLKEELAFLKKNHEEEV-RELQAQVSDTQVNVEMDaarkldltSALAEIRAQYEEI 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 620 AGKLQDE----FKRLSEQMDSMFTSNEKMAMKAMTEANELRMQKRQLEEMIkdanDELRANQAEYEAKLHELSEKLSFKT 695
Cdd:pfam00038 183 AAKNREEaeewYQSKLEELQQAAARNGDALRSAKEEITELRRTIQSLEIEL----QSLKKQKASLERQLAETEERYELQL 258
|
250
....*....|..
gi 15221736 696 SQMERMLENLDE 707
Cdd:pfam00038 259 ADYQELISELEA 270
|
|
| hsdR |
PRK11448 |
type I restriction enzyme EcoKI subunit R; Provisional |
718-815 |
9.54e-03 |
|
type I restriction enzyme EcoKI subunit R; Provisional
Pssm-ID: 236912 [Multi-domain] Cd Length: 1123 Bit Score: 39.93 E-value: 9.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 718 HEEDVTANLNQEIKILKEEIENLKKNQDSLMLQAEQAENLRVDLEKTKKSVMEAEASLQRENMKKIELESKISLMRKESE 797
Cdd:PRK11448 139 DPENLLHALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAETSQERKQKR 218
|
90
....*....|....*...
gi 15221736 798 SLAAELQVIKLAKDEKET 815
Cdd:PRK11448 219 KEITDQAAKRLELSEEET 236
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
692-1001 |
9.64e-03 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 40.01 E-value: 9.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 692 SFKTSQMER---MLENLDEKSNEIDNQKRHEEDVTANL--NQEIKILKEEIENLKKNQDSLMLQAEQAENLRVDLEKtkk 766
Cdd:pfam05667 203 SVVPSLLERnaaELAAAQEWEEEWNSQGLASRLTPEEYrkRKRTKLLKRIAEQLRSAALAGTEATSGASRSAQDLAE--- 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 767 SVMEAEASLQRENMKkieleSKIS-LMRKESESLAAELQ----VIKLAKDEKETAISLLQTELETVRSQCDDLKHSLSEN 841
Cdd:pfam05667 280 LLSSFSGSSTTDTGL-----TKGSrFTHTEKLQFTNEAPaatsSPPTKVETEEELQQQREEELEELQEQLEDLESSIQEL 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 842 DLEMEKHKKQVAHVKSELKKKEETMANLEKKLKesrtaitktaqrnninkgspvgahggskevaVMKDKIKLL---EGQI 918
Cdd:pfam05667 355 EKEIKKLESSIKQVEEELEELKEQNEELEKQYK-------------------------------VKKKTLDLLpdaEENI 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15221736 919 KLKETALESSS----NMFIEKEKNLKNRIEELETKLDQNSQEMSENELlngqenedigvLVAEIESLRECNGSMEMELKE 994
Cdd:pfam05667 404 AKLQALVDASAqrlvELAGQWEKHRVPLIEEYRALKEAKSNKEDESQR-----------KLEEIKELREKIKEVAEEAKQ 472
|
....*..
gi 15221736 995 MRERYSE 1001
Cdd:pfam05667 473 KEELYKQ 479
|
|
| |
