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Conserved domains on  [gi|15222012|ref|NP_175324|]
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early nodulin-like protein 6 [Arabidopsis thaliana]

Protein Classification

early nodulin-like family protein( domain architecture ID 10181143)

early nodulin-like family protein belongs to the phytocyanin-like group of blue copper proteins from the cupredoxin superfamily, and may be involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
OsENODL1_like cd11019
Early nodulin-like protein (OsENODL1) and similar proteins; This family includes early ...
 24-126 3.95e-50

Early nodulin-like protein (OsENODL1) and similar proteins; This family includes early nodulin-like protein (OsENODL1) from Oryza sativa and similar proteins. It belongs to the phytocyanin family of blue copper proteins, a ubiquitous family of plant cupredoxins. Phytocyanin is involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form. OsENODL1 expression occurs specifically at the late developmental stage of the seeds. Members of this subgroup appear to have lost the T1 copper binding site.


:

Pssm-ID: 259905  Cd Length: 103  Bit Score: 156.66  E-value: 3.95e-50
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222012  24 TEFEAGGENGWIIPQSSNQSdiFNQWASKNRFKVGDTIRFKYK--KDSVLVVTEDEYKKCQTTKPELYSNHDDTVFKLDR 101
Cdd:cd11019   1 REFKVGGKDGWKVPPSASES--YNQWAERNRFQVGDSLVFKYDkgNDSVLEVTKEDYDSCNTSSPIARFNDGNTKFTLDR 78

                        90       100
                ....*....|....*....|....*
gi 15222012 102 PGLFYFISGVSGHCEQGQKMIIKVM 126
Cdd:cd11019  79 SGPFYFISGAPGHCEKGQKLIVVVM 103
 
Name Accession Description Interval E-value
OsENODL1_like cd11019
Early nodulin-like protein (OsENODL1) and similar proteins; This family includes early ...
 24-126 3.95e-50

Early nodulin-like protein (OsENODL1) and similar proteins; This family includes early nodulin-like protein (OsENODL1) from Oryza sativa and similar proteins. It belongs to the phytocyanin family of blue copper proteins, a ubiquitous family of plant cupredoxins. Phytocyanin is involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form. OsENODL1 expression occurs specifically at the late developmental stage of the seeds. Members of this subgroup appear to have lost the T1 copper binding site.


Pssm-ID: 259905  Cd Length: 103  Bit Score: 156.66  E-value: 3.95e-50
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222012  24 TEFEAGGENGWIIPQSSNQSdiFNQWASKNRFKVGDTIRFKYK--KDSVLVVTEDEYKKCQTTKPELYSNHDDTVFKLDR 101
Cdd:cd11019   1 REFKVGGKDGWKVPPSASES--YNQWAERNRFQVGDSLVFKYDkgNDSVLEVTKEDYDSCNTSSPIARFNDGNTKFTLDR 78

                        90       100
                ....*....|....*....|....*
gi 15222012 102 PGLFYFISGVSGHCEQGQKMIIKVM 126
Cdd:cd11019  79 SGPFYFISGAPGHCEKGQKLIVVVM 103
Cu_bind_like pfam02298
Plastocyanin-like domain; This family represents a domain found in flowering plants related to ...
 34-119 1.17e-22

Plastocyanin-like domain; This family represents a domain found in flowering plants related to the copper binding protein plastocyanin. Some members of this family may not bind copper due to the lack of key residues.


Pssm-ID: 280462  Cd Length: 84  Bit Score: 86.25  E-value: 1.17e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222012    34 WIIPQSSNqsdiFNQWASKNRFKVGDTIRFKYKKD--SVLVVTEDEYKKCQTTKP-ELYSNHDDTVfKLDRPGLFYFISG 110
Cdd:pfam02298   1 WTVNAESD----YTTWAQGKTFRVGDTLVFKYDSDfhNVVEVTKADYESCDTSKPiRNYTTGSDKV-TLTKPGPNYFICG 75


                  ....*....
gi 15222012   111 VSGHCEQGQ 119
Cdd:pfam02298  76 VPGHCKFGM 84
PLN03148 PLN03148
Blue copper-like protein; Provisional
 6-125 1.23e-08

Blue copper-like protein; Provisional


Pssm-ID: 178693  Cd Length: 167  Bit Score: 51.80  E-value: 1.23e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222012    6 IVLLSIFVCFYVfSLVSCTEFEAGGENGWiipqssNQSDIFNQWASKNRFKVGDTIRFKYKKD--SVLVVTEDEYKKCqT 83
Cdd:PLN03148   4 LLLFCFFALFSA-SATTATDHIVGANKGW------NPGINYTLWANNQTFYVGDLISFRYQKTqyNVFEVNQTGYDNC-T 75

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 15222012   84 TKPEL--YSNHDDTVfKLDRPGLFYFISGvSGHCEQGQKMIIKV 125
Cdd:PLN03148  76 TEGAAgnWTSGKDFI-PLNKAKRYYFICG-NGQCFNGMKVTILV 117
 
Name Accession Description Interval E-value
OsENODL1_like cd11019
Early nodulin-like protein (OsENODL1) and similar proteins; This family includes early ...
 24-126 3.95e-50

Early nodulin-like protein (OsENODL1) and similar proteins; This family includes early nodulin-like protein (OsENODL1) from Oryza sativa and similar proteins. It belongs to the phytocyanin family of blue copper proteins, a ubiquitous family of plant cupredoxins. Phytocyanin is involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form. OsENODL1 expression occurs specifically at the late developmental stage of the seeds. Members of this subgroup appear to have lost the T1 copper binding site.


Pssm-ID: 259905  Cd Length: 103  Bit Score: 156.66  E-value: 3.95e-50
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222012  24 TEFEAGGENGWIIPQSSNQSdiFNQWASKNRFKVGDTIRFKYK--KDSVLVVTEDEYKKCQTTKPELYSNHDDTVFKLDR 101
Cdd:cd11019   1 REFKVGGKDGWKVPPSASES--YNQWAERNRFQVGDSLVFKYDkgNDSVLEVTKEDYDSCNTSSPIARFNDGNTKFTLDR 78

                        90       100
                ....*....|....*....|....*
gi 15222012 102 PGLFYFISGVSGHCEQGQKMIIKVM 126
Cdd:cd11019  79 SGPFYFISGAPGHCEKGQKLIVVVM 103
Phytocyanin cd04216
Phytocyanins are plant blue or type I copper proteins; Phytocyanins are plant blue or type I ...
 24-125 5.69e-31

Phytocyanins are plant blue or type I copper proteins; Phytocyanins are plant blue or type I copper proteins. They are involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form. Phytocyanins are classified into four groups: stellacyanin, plantacyanin, uclacyanin and early nodulin groups. Stellacyanin appears to be associated with the plant cell wall; it may be involved in oxidative reactions to build polymeric material making up the cell wall. Plantacyanin is shown to play a role in reproduction in Arabidopsis. Plantacyanins may also be stress-related proteins and may be involved in plant defense responses. The early nodulin-like protein (OsENODL1) from Oryza sativa is expressed specifically at the late developmental stage of the seeds.


Pssm-ID: 259878 [Multi-domain]  Cd Length: 98  Bit Score: 107.73  E-value: 5.69e-31
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222012  24 TEFEAGGENGWIIPQSsnqsdiFNQWASKNRFKVGDTIRFKY--KKDSVLVVTEDEYKKCQTTKPELYSNHDDTVFKLDR 101
Cdd:cd04216   1 TDYTVGDSNGWDLPVN------YTAWASGKTFRVGDSLVFNYnaGAHSVVEVNEADYDSCDTSNPINTYTSGNDSVTLTK 74

                        90       100
                ....*....|....*....|....
gi 15222012 102 PGLFYFISGVSGHCEQGQKMIIKV 125
Cdd:cd04216  75 PGTRYFICGVPGHCQSGMKLAINV 98
Stellacyanin cd13920
Stellacyanin is a subclass of phytocyanins, a plant type I copper protein; Stellacyanin is a ...
 24-125 7.10e-25

Stellacyanin is a subclass of phytocyanins, a plant type I copper protein; Stellacyanin is a subclass of the phytocyanins, a ubiquitous family of plant cupredoxins. Stellacyanin is involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form. The copper is tetrahedrally coordinated by a cysteine, 2 histidines, and a glutamine residue. The glutamine residue substitutes for a methione ligand typically found in other blue copper proteins. The exact function of stellacyanin is unknown. However, stellacyanin appears to be associated with the plant cell wall; it may be involved in oxidative reactions to build polymeric material making up the cell wall.


Pssm-ID: 259987 [Multi-domain]  Cd Length: 101  Bit Score: 92.38  E-value: 7.10e-25
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222012  24 TEFEAGGENGWIIPQSSNqsdIFNQWASKNRFKVGDTIRFKYKKD--SVLVVTEDEYKKCQTTKPELYSNHDDTVFKLDR 101
Cdd:cd13920   1 TDHIVGGSLGWSIPPNAS---FYTDWAANRTFRVGDSLVFNFEAGvhNVVEVSKEEYDNCTTTNPIKVFTTGPVIITLNE 77

                        90       100
                ....*....|....*....|....
gi 15222012 102 PGLFYFISGVSGHCEQGQKMIIKV 125
Cdd:cd13920  78 TGTRYFICTVGNHCSLGQKVSINV 101
Cu_bind_like pfam02298
Plastocyanin-like domain; This family represents a domain found in flowering plants related to ...
 34-119 1.17e-22

Plastocyanin-like domain; This family represents a domain found in flowering plants related to the copper binding protein plastocyanin. Some members of this family may not bind copper due to the lack of key residues.


Pssm-ID: 280462  Cd Length: 84  Bit Score: 86.25  E-value: 1.17e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222012    34 WIIPQSSNqsdiFNQWASKNRFKVGDTIRFKYKKD--SVLVVTEDEYKKCQTTKP-ELYSNHDDTVfKLDRPGLFYFISG 110
Cdd:pfam02298   1 WTVNAESD----YTTWAQGKTFRVGDTLVFKYDSDfhNVVEVTKADYESCDTSKPiRNYTTGSDKV-TLTKPGPNYFICG 75


                  ....*....
gi 15222012   111 VSGHCEQGQ 119
Cdd:pfam02298  76 VPGHCKFGM 84
Mavicyanin cd11014
Mavicyanin is a subclass of phytocyanins, a plant blue copper protein; Mavicyanin is a ...
 24-126 8.82e-22

Mavicyanin is a subclass of phytocyanins, a plant blue copper protein; Mavicyanin is a glycosylated protein isolated from Cucurbita pepo medullosa (zucchini) peelings. It belongs to the phytocyanin family of blue copper proteins, a ubiquitous family of plant cupredoxins. Mavicyanin is involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form. The copper is tetrahedrally coordinated by a cysteine, 2 histidines, and a glutamine residue, like in the case of stellacyanin. The biological roles of mavicyanin have not been elucidated yet.


Pssm-ID: 259900  Cd Length: 101  Bit Score: 84.37  E-value: 8.82e-22
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222012  24 TEFEAGGENGWIIPQSsnqsDIFNQWASKNRFKVGDTIRFKYKKD--SVLVVTEDEYKKCQTTKPELYSNHDDTVFKLDR 101
Cdd:cd11014   1 TVYKVGDSDGWTVYDS----DYYYKWSSSKTFHVGDSLIFQYNKEfhDVTEVTGEEFESCNSTSPIAVYNTGHDIIKLTK 76

                        90       100
                ....*....|....*....|....*
gi 15222012 102 PGLFYFISGVSGHCEQGQKMIIKVM 126
Cdd:cd11014  77 PGQYYFICGVPGHCDSGQKLQVNVT 101
Plantacyanin cd11013
Plantacyanin is a subclass of phytocyanins, plant type I copper proteins; Plantacyanins belong ...
 24-125 2.05e-13

Plantacyanin is a subclass of phytocyanins, plant type I copper proteins; Plantacyanins belong to the phytocyanin family of blue copper proteins, a ubiquitous family of plant cupredoxins. Plantacyanin is involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form. The exact function of plantacyanin is unknown. However plantacyanin is shown to play a role in reproduction in Arabidopsis. Plantacyanins may also be stress-related proteins and be involved in plant defense responses.


Pssm-ID: 259899  Cd Length: 95  Bit Score: 62.76  E-value: 2.05e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222012  24 TEFEAGGENGWiipqssnqSDIFNQWASKNRFKVGDTIRFKYKKDS--VLVVTEDEYKKCQTTK-PELYSNHDDTVfKLd 100
Cdd:cd11013   1 ATYVVGDSIGW--------TFGVVGWPNGKTFRAGDVLVFNYDPSAhnVVVVDEGGYRTCKAPPgAIVYTSGDDKI-TL- 70

                        90       100
                ....*....|....*....|....*
gi 15222012 101 RPGLFYFISGVSGHCEQGQKMIIKV 125
Cdd:cd11013  71 PKGVNYFICSFPGHCTSGMKIAVTA 95
Phytocyanin_like_1 cd11017
A subclass of phytocyanins, plant blue or type I copper proteins; Phytocyanins are plant blue ...
 46-125 8.54e-09

A subclass of phytocyanins, plant blue or type I copper proteins; Phytocyanins are plant blue or type I copper proteins. They are involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form. Phytocyanins are classified into four groups: stellacyanin, plantacyanin, uclacyanin and early nodulin groups. Members of this unknown subgroup appear to have lost the T1 copper binding site.


Pssm-ID: 259903  Cd Length: 99  Bit Score: 50.47  E-value: 8.54e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222012  46 FNQWASKNRFKVGDTIRFKYKKD--SVLVVTEDEYKKCQTTKPELY--SNHDDtVFKLDRPGLFYFISGvSGHCEQGQKM 121
Cdd:cd11017  18 YTDWAKMHGFYSGDWLVFRYQRGrhNVVQVNETGYDNCDASNPISNysSGGRD-IFQLNETKRYYFICG-RGYCYGGMKL 95


                ....
gi 15222012 122 IIKV 125
Cdd:cd11017  96 AITV 99
PLN03148 PLN03148
Blue copper-like protein; Provisional
 6-125 1.23e-08

Blue copper-like protein; Provisional


Pssm-ID: 178693  Cd Length: 167  Bit Score: 51.80  E-value: 1.23e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 15222012    6 IVLLSIFVCFYVfSLVSCTEFEAGGENGWiipqssNQSDIFNQWASKNRFKVGDTIRFKYKKD--SVLVVTEDEYKKCqT 83
Cdd:PLN03148   4 LLLFCFFALFSA-SATTATDHIVGANKGW------NPGINYTLWANNQTFYVGDLISFRYQKTqyNVFEVNQTGYDNC-T 75

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 15222012   84 TKPEL--YSNHDDTVfKLDRPGLFYFISGvSGHCEQGQKMIIKV 125
Cdd:PLN03148  76 TEGAAgnWTSGKDFI-PLNKAKRYYFICG-NGQCFNGMKVTILV 117
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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