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Conserved domains on  [gi|22329848|ref|NP_174230|]
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RNA polymerase II degradation factor-like protein (DUF1296) [Arabidopsis thaliana]

Protein Classification

GBF-interacting family 1 protein( domain architecture ID 10536658)

GBF-interacting family 1 protein is a DUF1296 domain-containing protein; similar to Arabidopsis thaliana GBF-interacting protein 1 that enhances G-box-binding factor (GBF) DNA binding activity

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
GIP1_N pfam06972
GBF-interacting protein 1 N-terminal; This entry represents the N-terminal domain of ...
 17-64 5.70e-24

GBF-interacting protein 1 N-terminal; This entry represents the N-terminal domain of GBF1-interacting protein 1 (GIP1, AT3G13222) from Arabidopsis. GIP1 may act as a coactivator that regulates transcription factors involved in lateral organ development of plants, such as bZIP transcription factors and LBD18.


:

Pssm-ID: 462056  Cd Length: 60  Bit Score: 95.49  E-value: 5.70e-24
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 22329848    17 IPSGSRKIVQSLTEIV-NSPEAEIYAMLKECNMDPNETVSRLLSQDPFH 64
Cdd:pfam06972   1 IPASVRKTIQSIKEIVgNHSDEEIYAMLKECNMDPNETVQKLLSQDTFH 49
 
Name Accession Description Interval E-value
GIP1_N pfam06972
GBF-interacting protein 1 N-terminal; This entry represents the N-terminal domain of ...
 17-64 5.70e-24

GBF-interacting protein 1 N-terminal; This entry represents the N-terminal domain of GBF1-interacting protein 1 (GIP1, AT3G13222) from Arabidopsis. GIP1 may act as a coactivator that regulates transcription factors involved in lateral organ development of plants, such as bZIP transcription factors and LBD18.


Pssm-ID: 462056  Cd Length: 60  Bit Score: 95.49  E-value: 5.70e-24
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 22329848    17 IPSGSRKIVQSLTEIV-NSPEAEIYAMLKECNMDPNETVSRLLSQDPFH 64
Cdd:pfam06972   1 IPASVRKTIQSIKEIVgNHSDEEIYAMLKECNMDPNETVQKLLSQDTFH 49
 
Name Accession Description Interval E-value
GIP1_N pfam06972
GBF-interacting protein 1 N-terminal; This entry represents the N-terminal domain of ...
 17-64 5.70e-24

GBF-interacting protein 1 N-terminal; This entry represents the N-terminal domain of GBF1-interacting protein 1 (GIP1, AT3G13222) from Arabidopsis. GIP1 may act as a coactivator that regulates transcription factors involved in lateral organ development of plants, such as bZIP transcription factors and LBD18.


Pssm-ID: 462056  Cd Length: 60  Bit Score: 95.49  E-value: 5.70e-24
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 22329848    17 IPSGSRKIVQSLTEIV-NSPEAEIYAMLKECNMDPNETVSRLLSQDPFH 64
Cdd:pfam06972   1 IPASVRKTIQSIKEIVgNHSDEEIYAMLKECNMDPNETVQKLLSQDTFH 49
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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