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Conserved domains on  [gi|15220499|ref|NP_172033|]
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ovate family protein 12 [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ovate super family cl04796
Transcriptional repressor, ovate; This is a family of transcriptional repressors. In plants, ...
 156-220 1.44e-24

Transcriptional repressor, ovate; This is a family of transcriptional repressors. In plants, these proteins are important regulators of growth and development.


The actual alignment was detected with superfamily member TIGR01568:

Pssm-ID: 471120  Cd Length: 66  Bit Score: 92.05  E-value: 1.44e-24
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15220499   156 VQSPDPYNDFRRSMQEMIDAVTNAGDlrrYEFLHELLLSYLSLNAADTHKFIIRAFADILVSLLS 220
Cdd:TIGR01568   5 KESDDPYEDFRRSMEEMIEERELEAD---WKELEELLACYLDLNPKKSHRFIVRAFVDILSALLS 66
 
Name Accession Description Interval E-value
A_thal_3678 TIGR01568
uncharacterized plant-specific domain TIGR01568; This model describes an uncharacterized ...
 156-220 1.44e-24

uncharacterized plant-specific domain TIGR01568; This model describes an uncharacterized domain of about 70 residues found exclusively in plants, generally toward the C-terminus of proteins of 200 to 350 amino acids in length. At least 14 such proteins are found in Arabidopsis thaliana. Other regions of these proteins tend to consist largely of low-complexity sequence.


Pssm-ID: 130631  Cd Length: 66  Bit Score: 92.05  E-value: 1.44e-24
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15220499   156 VQSPDPYNDFRRSMQEMIDAVTNAGDlrrYEFLHELLLSYLSLNAADTHKFIIRAFADILVSLLS 220
Cdd:TIGR01568   5 KESDDPYEDFRRSMEEMIEERELEAD---WKELEELLACYLDLNPKKSHRFIVRAFVDILSALLS 66
Ovate pfam04844
Transcriptional repressor, ovate; This is a family of transcriptional repressors. In plants, ...
 158-218 3.60e-24

Transcriptional repressor, ovate; This is a family of transcriptional repressors. In plants, these proteins are important regulators of growth and development.


Pssm-ID: 461454  Cd Length: 58  Bit Score: 90.70  E-value: 3.60e-24
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15220499   158 SPDPYNDFRRSMQEMIDAvtnaGDLRRYEFLHELLLSYLSLNAADTHKFIIRAFADILVSL 218
Cdd:pfam04844   1 SEDPYEDFRRSMEEMIAE----NGIGDWEDLEELLFCYLSLNSKEHHKLIVEAFVDLWVSL 57
 
Name Accession Description Interval E-value
A_thal_3678 TIGR01568
uncharacterized plant-specific domain TIGR01568; This model describes an uncharacterized ...
 156-220 1.44e-24

uncharacterized plant-specific domain TIGR01568; This model describes an uncharacterized domain of about 70 residues found exclusively in plants, generally toward the C-terminus of proteins of 200 to 350 amino acids in length. At least 14 such proteins are found in Arabidopsis thaliana. Other regions of these proteins tend to consist largely of low-complexity sequence.


Pssm-ID: 130631  Cd Length: 66  Bit Score: 92.05  E-value: 1.44e-24
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 15220499   156 VQSPDPYNDFRRSMQEMIDAVTNAGDlrrYEFLHELLLSYLSLNAADTHKFIIRAFADILVSLLS 220
Cdd:TIGR01568   5 KESDDPYEDFRRSMEEMIEERELEAD---WKELEELLACYLDLNPKKSHRFIVRAFVDILSALLS 66
Ovate pfam04844
Transcriptional repressor, ovate; This is a family of transcriptional repressors. In plants, ...
 158-218 3.60e-24

Transcriptional repressor, ovate; This is a family of transcriptional repressors. In plants, these proteins are important regulators of growth and development.


Pssm-ID: 461454  Cd Length: 58  Bit Score: 90.70  E-value: 3.60e-24
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 15220499   158 SPDPYNDFRRSMQEMIDAvtnaGDLRRYEFLHELLLSYLSLNAADTHKFIIRAFADILVSL 218
Cdd:pfam04844   1 SEDPYEDFRRSMEEMIAE----NGIGDWEDLEELLFCYLSLNSKEHHKLIVEAFVDLWVSL 57
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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