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Conserved domains on  [gi|13376725|ref|NP_079416|]
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coiled-coil domain-containing protein 92 isoform 1 [Homo sapiens]

Protein Classification

Mplasa_alph_rch and CCDC92 domain-containing protein( domain architecture ID 10633014)

Mplasa_alph_rch and CCDC92 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CCDC92 pfam14916
Coiled-coil domain of unknown function; This domain family is found in eukaryotes, and is ...
 24-77 3.12e-19

Coiled-coil domain of unknown function; This domain family is found in eukaryotes, and is approximately 60 amino acids in length. The function is not known and the proteins carry no other domains.


:

Pssm-ID: 464372 [Multi-domain]  Cd Length: 57  Bit Score: 80.03  E-value: 3.12e-19
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 13376725    24 ENQLHSAQKNLLFLQREHASTLKGLHSEIRRLQQHCTDLTYELTVKSSEQTGDG 77
Cdd:pfam14916   1 EQRLQSLEKSILFLQQQHAATLKGLHKEIERLQKENKDLTFKLVMSEGESSQQG 54
Mplasa_alph_rch super family cl37461
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
 21-169 1.49e-05

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


The actual alignment was detected with superfamily member TIGR04523:

Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 46.55  E-value: 1.49e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13376725    21 TNLENQLHSAQKNLLFLQREHAS-TLKGLHSEIRRLQQHCTDLTYELT------------VKSSEQT-GDGTSKSSELKK 86
Cdd:TIGR04523 284 KELEKQLNQLKSEISDLNNQKEQdWNKELKSELKNQEKKLEEIQNQISqnnkiisqlneqISQLKKElTNSESENSEKQR 363

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13376725    87 RCEELEAQLKVKENENAELLKELEQKNAMITVLENTIKEREK---------KYLE-ELKAKSHKLTLLSSELEQRASTIA 156
Cdd:TIGR04523 364 ELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKlnqqkdeqiKKLQqEKELLEKEIERLKETIIKNNSEIK 443

                         170
                  ....*....|...
gi 13376725   157 YLTSQLHAAKKKL 169
Cdd:TIGR04523 444 DLTNQDSVKELII 456
 
Name Accession Description Interval E-value
CCDC92 pfam14916
Coiled-coil domain of unknown function; This domain family is found in eukaryotes, and is ...
 24-77 3.12e-19

Coiled-coil domain of unknown function; This domain family is found in eukaryotes, and is approximately 60 amino acids in length. The function is not known and the proteins carry no other domains.


Pssm-ID: 464372 [Multi-domain]  Cd Length: 57  Bit Score: 80.03  E-value: 3.12e-19
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 13376725    24 ENQLHSAQKNLLFLQREHASTLKGLHSEIRRLQQHCTDLTYELTVKSSEQTGDG 77
Cdd:pfam14916   1 EQRLQSLEKSILFLQQQHAATLKGLHKEIERLQKENKDLTFKLVMSEGESSQQG 54
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
 21-169 1.49e-05

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 46.55  E-value: 1.49e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13376725    21 TNLENQLHSAQKNLLFLQREHAS-TLKGLHSEIRRLQQHCTDLTYELT------------VKSSEQT-GDGTSKSSELKK 86
Cdd:TIGR04523 284 KELEKQLNQLKSEISDLNNQKEQdWNKELKSELKNQEKKLEEIQNQISqnnkiisqlneqISQLKKElTNSESENSEKQR 363

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13376725    87 RCEELEAQLKVKENENAELLKELEQKNAMITVLENTIKEREK---------KYLE-ELKAKSHKLTLLSSELEQRASTIA 156
Cdd:TIGR04523 364 ELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKlnqqkdeqiKKLQqEKELLEKEIERLKETIIKNNSEIK 443

                         170
                  ....*....|...
gi 13376725   157 YLTSQLHAAKKKL 169
Cdd:TIGR04523 444 DLTNQDSVKELII 456
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
79-169 2.52e-04

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 42.74  E-value: 2.52e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13376725   79 SKSSELKKRCEELEAQLKVKENENAELLKELEQKN-AMITVLENTIKERE---KKYLE------ELKAKSHKLTLLSSEL 148
Cdd:PRK03918 549 EKLEELKKKLAELEKKLDELEEELAELLKELEELGfESVEELEERLKELEpfyNEYLElkdaekELEREEKELKKLEEEL 628

                         90       100
                 ....*....|....*....|.
gi 13376725  149 EQRASTIAYLTSQLHAAKKKL 169
Cdd:PRK03918 629 DKAFEELAETEKRLEELRKEL 649
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 19-169 9.63e-04

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 41.08  E-value: 9.63e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13376725  19 AATNLENQLHSAQKNLLFLQREHASTLKGLHSEIRRLQQHCTDLtyeltVKSSEQTGDGTSKSSELKKRCEELEAQLKVK 98
Cdd:COG1196 275 ELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERL-----EELEEELAELEEELEELEEELEELEEELEEA 349

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 13376725  99 ENENAELLKELEQKNAMITVLENTIKEREKKYLEELKAKSHKLTllssELEQRASTIAYLTSQLHAAKKKL 169
Cdd:COG1196 350 EEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALR----AAAELAAQLEELEEAEEALLERL 416
 
Name Accession Description Interval E-value
CCDC92 pfam14916
Coiled-coil domain of unknown function; This domain family is found in eukaryotes, and is ...
 24-77 3.12e-19

Coiled-coil domain of unknown function; This domain family is found in eukaryotes, and is approximately 60 amino acids in length. The function is not known and the proteins carry no other domains.


Pssm-ID: 464372 [Multi-domain]  Cd Length: 57  Bit Score: 80.03  E-value: 3.12e-19
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 13376725    24 ENQLHSAQKNLLFLQREHASTLKGLHSEIRRLQQHCTDLTYELTVKSSEQTGDG 77
Cdd:pfam14916   1 EQRLQSLEKSILFLQQQHAATLKGLHKEIERLQKENKDLTFKLVMSEGESSQQG 54
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
 21-169 1.49e-05

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 46.55  E-value: 1.49e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13376725    21 TNLENQLHSAQKNLLFLQREHAS-TLKGLHSEIRRLQQHCTDLTYELT------------VKSSEQT-GDGTSKSSELKK 86
Cdd:TIGR04523 284 KELEKQLNQLKSEISDLNNQKEQdWNKELKSELKNQEKKLEEIQNQISqnnkiisqlneqISQLKKElTNSESENSEKQR 363

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13376725    87 RCEELEAQLKVKENENAELLKELEQKNAMITVLENTIKEREK---------KYLE-ELKAKSHKLTLLSSELEQRASTIA 156
Cdd:TIGR04523 364 ELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKlnqqkdeqiKKLQqEKELLEKEIERLKETIIKNNSEIK 443

                         170
                  ....*....|...
gi 13376725   157 YLTSQLHAAKKKL 169
Cdd:TIGR04523 444 DLTNQDSVKELII 456
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
 23-168 1.35e-04

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 43.47  E-value: 1.35e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13376725    23 LENQLHSAQKNLLFLQREhastLKGLHSEIRRLQQHCTDLtyeltvksSEQTGDGTSKSSELKKRCEELEAQLKVKENE- 101
Cdd:TIGR04523 473 LSRSINKIKQNLEQKQKE----LKSKEKELKKLNEEKKEL--------EEKVKDLTKKISSLKEKIEKLESEKKEKESKi 540

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13376725   102 ---------------NAELLKELEQKNAMITVLENTIKEREKKYLE---ELKAKSHKLTLLSSELEQRASTIAYLTSQLH 163
Cdd:TIGR04523 541 sdledelnkddfelkKENLEKEIDEKNKEIEELKQTQKSLKKKQEEkqeLIDQKEKEKKDLIKEIEEKEKKISSLEKELE 620


                  ....*
gi 13376725   164 AAKKK 168
Cdd:TIGR04523 621 KAKKE 625
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
79-169 2.52e-04

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 42.74  E-value: 2.52e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13376725   79 SKSSELKKRCEELEAQLKVKENENAELLKELEQKN-AMITVLENTIKERE---KKYLE------ELKAKSHKLTLLSSEL 148
Cdd:PRK03918 549 EKLEELKKKLAELEKKLDELEEELAELLKELEELGfESVEELEERLKELEpfyNEYLElkdaekELEREEKELKKLEEEL 628

                         90       100
                 ....*....|....*....|.
gi 13376725  149 EQRASTIAYLTSQLHAAKKKL 169
Cdd:PRK03918 629 DKAFEELAETEKRLEELRKEL 649
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 24-169 4.26e-04

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 42.35  E-value: 4.26e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13376725     24 ENQLHSAQKNL----------------LFLQREHASTLKGLHSEIRRLQQHCTDLTYELTVKSSEQTgdgTSKSSELKKR 87
Cdd:TIGR02168  178 ERKLERTRENLdrledilnelerqlksLERQAEKAERYKELKAELRELELALLVLRLEELREELEEL---QEELKEAEEE 254

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13376725     88 CEELEAQLKVKEnenaellKELEQKNAMITVLENTIKEREKKYLE---ELKAKSHKLTLLSSELEQRASTIAYLTSQLHA 164
Cdd:TIGR02168  255 LEELTAELQELE-------EKLEELRLEVSELEEEIEELQKELYAlanEISRLEQQKQILRERLANLERQLEELEAQLEE 327


                   ....*
gi 13376725    165 AKKKL 169
Cdd:TIGR02168  328 LESKL 332
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 11-162 8.06e-04

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 41.20  E-value: 8.06e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13376725     11 EGPLDVSMAATNLENQLHSAQKNLLFLQREHA----STLKGLHSEIRRLQQHCTDLTYELTVKSsEQTGDGTSKSSELKK 86
Cdd:TIGR02168  788 EAQIEQLKEELKALREALDELRAELTLLNEEAanlrERLESLERRIAATERRLEDLEEQIEELS-EDIESLAAEIEELEE 866

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13376725     87 RCEELEAQLKVKENENAELLKELEQKNAMITVLENTIKEREKK------YLEELKAKSHKLTLLSSELEQRastIAYLTS 160
Cdd:TIGR02168  867 LIEELESELEALLNERASLEEALALLRSELEELSEELRELESKrselrrELEELREKLAQLELRLEGLEVR---IDNLQE 943


                   ..
gi 13376725    161 QL 162
Cdd:TIGR02168  944 RL 945
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
 21-155 8.69e-04

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 41.16  E-value: 8.69e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13376725    21 TNLENQLhsaqKNLLFLQREHASTLKGLHSEIRRLQQHCTDLTYELTVKSSEQTGDGTSKS---------------SELK 85
Cdd:TIGR04523 506 KELEEKV----KDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEKEideknkeieelkqtqKSLK 581

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13376725    86 KRCEELEAQLKVKENENAELLKELEQKNAMITVLENTIKEREKKYlEELKAKSHKLTLLSSELEQRASTI 155
Cdd:TIGR04523 582 KKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKEN-EKLSSIIKNIKSKKNKLKQEVKQI 650
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 19-169 9.63e-04

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 41.08  E-value: 9.63e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13376725  19 AATNLENQLHSAQKNLLFLQREHASTLKGLHSEIRRLQQHCTDLtyeltVKSSEQTGDGTSKSSELKKRCEELEAQLKVK 98
Cdd:COG1196 275 ELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERL-----EELEEELAELEEELEELEEELEELEEELEEA 349

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 13376725  99 ENENAELLKELEQKNAMITVLENTIKEREKKYLEELKAKSHKLTllssELEQRASTIAYLTSQLHAAKKKL 169
Cdd:COG1196 350 EEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALR----AAAELAAQLEELEEAEEALLERL 416
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
23-169 1.67e-03

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 40.05  E-value: 1.67e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13376725   23 LENQLHSAQKNLLFLQREhastLKGLHSEIRRLQQHCTDlTYELTVKSSEQTGDGTSKSSELKKRCEELEAQLKVKENEN 102
Cdd:PRK03918 554 LKKKLAELEKKLDELEEE----LAELLKELEELGFESVE-ELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEEL 628

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 13376725  103 AELLKELEQKNAMITVLENTIKEREKKY-LEELKAKSHKLTLLSSELEQRASTIAYLTSQLHAAKKKL 169
Cdd:PRK03918 629 DKAFEELAETEKRLEELRKELEELEKKYsEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTL 696
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 79-169 3.39e-03

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 39.28  E-value: 3.39e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13376725     79 SKSSELKKRCEELEAQLKVKENENAELLKELEQKNAMitvlENTIKEREKKYLEELKAKSHKLTLLSSELEQRASTIAYL 158
Cdd:TIGR02169  695 SELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQE----EEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEEL 770

                           90
                   ....*....|.
gi 13376725    159 TSQLHAAKKKL 169
Cdd:TIGR02169  771 EEDLHKLEEAL 781
COG4372 COG4372
Uncharacterized protein, contains DUF3084 domain [Function unknown];
63-167 3.51e-03

Uncharacterized protein, contains DUF3084 domain [Function unknown];


Pssm-ID: 443500 [Multi-domain]  Cd Length: 370  Bit Score: 38.73  E-value: 3.51e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13376725  63 TYELTVKSSEQTGDGTSKSSELKKRCEELEAQLKVKENENAELLKELEQKNAMITVLENTIKEREkkylEELKAKSHKLT 142
Cdd:COG4372  22 TGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELN----EQLQAAQAELA 97

                        90       100
                ....*....|....*....|....*
gi 13376725 143 LLSSELEQRASTIAYLTSQLHAAKK 167
Cdd:COG4372  98 QAQEELESLQEEAEELQEELEELQK 122
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 83-169 3.73e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 39.15  E-value: 3.73e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13376725  83 ELKKRCEELEAQLKVKENENAELLKELEQKNAMITVLENTIKEREkkylEELKAKSHKLTLLSSELEQRASTIAYLTSQL 162
Cdd:COG1196 236 ELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELE----LELEEAQAEEYELLAELARLEQDIARLEERR 311


                ....*..
gi 13376725 163 HAAKKKL 169
Cdd:COG1196 312 RELEERL 318
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
26-165 4.65e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 38.74  E-value: 4.65e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13376725   26 QLHSAQKNLLFL--QREHASTLKGLHSEIRRLQQHCTDLTYELTVKSSEQtgdGTSKSSELKKRCEELEAQLKVKENENA 103
Cdd:COG4913  236 DLERAHEALEDAreQIELLEPIRELAERYAAARERLAELEYLRAALRLWF---AQRRLELLEAELEELRAELARLEAELE 312

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 13376725  104 ELLKELEQKNAMITVLENTIKEREKKYLEELKAKSHKLTLLSSELEQRASTIAYLTSQLHAA 165
Cdd:COG4913  313 RLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLP 374
PRK12704 PRK12704
phosphodiesterase; Provisional
 83-172 5.52e-03

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 38.22  E-value: 5.52e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13376725   83 ELKKRCEELEAQLKVKENENAELLKELEQK-------NAMITVLENTIKEREKKY---LEELKAKSHKLTLLSSELEQRA 152
Cdd:PRK12704  65 EIHKLRNEFEKELRERRNELQKLEKRLLQKeenldrkLELLEKREEELEKKEKELeqkQQELEKKEEELEELIEEQLQEL 144

                         90       100
                 ....*....|....*....|
gi 13376725  153 STIAYLTSQlhAAKKKLMSS 172
Cdd:PRK12704 145 ERISGLTAE--EAKEILLEK 162
DR0291 COG1579
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
 23-169 8.11e-03

Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];


Pssm-ID: 441187 [Multi-domain]  Cd Length: 236  Bit Score: 37.21  E-value: 8.11e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13376725  23 LENQLHSAQKNLlflqREHASTLKGLHSEIRRLQQHCTDLTyELTVKSSEQTGDGTS--KSSELKKRCEELEAQLKVKEN 100
Cdd:COG1579  36 LEDELAALEARL----EAAKTELEDLEKEIKRLELEIEEVE-ARIKKYEEQLGNVRNnkEYEALQKEIESLKRRISDLED 110

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 13376725 101 ENAELLKELEQKNAMITVLENTIKEREKKyLEELKAKshkltlLSSELEQRASTIAYLTSQLHAAKKKL 169
Cdd:COG1579 111 EILELMERIEELEEELAELEAELAELEAE-LEEKKAE------LDEELAELEAELEELEAEREELAAKI 172
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
 23-155 9.38e-03

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 37.69  E-value: 9.38e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13376725    23 LENQLHSAQKNLLFLQREHASTLKglhsEIRRLQQHCTDLTyeltvksseqtgdgtSKSSELKKRCEELEAQLKVKENEN 102
Cdd:TIGR04523 361 KQRELEEKQNEIEKLKKENQSYKQ----EIKNLESQINDLE---------------SKIQNQEKLNQQKDEQIKKLQQEK 421

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 13376725   103 AELLKELEQKNAMITVLENTIKEREKK-YLEELKAKSHKLTllSSELEQRASTI 155
Cdd:TIGR04523 422 ELLEKEIERLKETIIKNNSEIKDLTNQdSVKELIIKNLDNT--RESLETQLKVL 473
hsdR PRK11448
type I restriction enzyme EcoKI subunit R; Provisional
 76-169 9.38e-03

type I restriction enzyme EcoKI subunit R; Provisional


Pssm-ID: 236912 [Multi-domain]  Cd Length: 1123  Bit Score: 38.01  E-value: 9.38e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13376725    76 DGTSKSSELKKRCEELEAQLKVKENENAELLKELEQKNAMITVLENTIKEREKKyLEELKAKSHKLTllSSELEQRASTI 155
Cdd:PRK11448  139 DPENLLHALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEK-QQELEAQLEQLQ--EKAAETSQERK 215

                          90
                  ....*....|....
gi 13376725   156 AYLTSQLHAAKKKL 169
Cdd:PRK11448  216 QKRKEITDQAAKRL 229
CwlO1 COG3883
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ...
 21-194 9.53e-03

Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];


Pssm-ID: 443091 [Multi-domain]  Cd Length: 379  Bit Score: 37.50  E-value: 9.53e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13376725  21 TNLENQLHSAQKNLLFLQREHASTLKGLHSEIRRLQQHCTDLTYELTVKSSEQTGDGTSKSSELKK---RCEELEAQLKV 97
Cdd:COG3883  61 EALQAEIDKLQAEIAEAEAEIEERREELGERARALYRSGGSVSYLDVLLGSESFSDFLDRLSALSKiadADADLLEELKA 140

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13376725  98 KENENAELLKELEQKNAMITVLENTIKEREKKYLEELKAKSHKLTLLSSELEQRASTIAYLTSQLHAAKKKLMSSSGTSD 177
Cdd:COG3883 141 DKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAA 220

                       170
                ....*....|....*..
gi 13376725 178 ASPSGSPVLASYKPAPP 194
Cdd:COG3883 221 AAAAAAAAAAAAAAAAA 237
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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