|
Name |
Accession |
Description |
Interval |
E-value |
| Filament |
pfam00038 |
Intermediate filament protein; |
159-445 |
1.47e-12 |
|
Intermediate filament protein;
Pssm-ID: 459643 [Multi-domain] Cd Length: 313 Bit Score: 68.41 E-value: 1.47e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059478 159 EDLERLEARFQQCVQAVSQLEEERDQLIHELVLLREPALQEVQQVHQ-----------DILAAYKLHAQAELERDGLREE 227
Cdd:pfam00038 4 EQLQELNDRLASYIDKVRFLEQQNKLLETKISELRQKKGAEPSRLYSlyekeiedlrrQLDTLTVERARLQLELDNLRLA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059478 228 IRTVKQKLFKVTKECVAYQYQLECRQQDVAQFADCREALTTRAAQLSEELTQLRD---------ACQKQKEQLQQQLEAP 298
Cdd:pfam00038 84 AEDFRQKYEDELNLRTSAENDLVGLRKDLDEATLARVDLEAKIESLKEELAFLKKnheeevrelQAQVSDTQVNVEMDAA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059478 299 PTQSDGHFLQESRRlstQFENLMAESRQGLEEEYEPQLLRLLERKEAGTKALQDTQAEIQEMREALRPLEAEARQLQLQN 378
Cdd:pfam00038 164 RKLDLTSALAEIRA---QYEEIAAKNREEAEEWYQSKLEELQQAAARNGDALRSAKEEITELRRTIQSLEIELQSLKKQK 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 47059478 379 RNLEDQITLVRQKRDEEVQQYREQLEEMEERQRQLRSGVQVQQQKNKEMERLRMSLAEELSTYKAML 445
Cdd:pfam00038 241 ASLERQLAETEERYELQLADYQELISELEAELQETRQEMARQLREYQELLNVKLALDIEIATYRKLL 307
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
159-436 |
3.09e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.77 E-value: 3.09e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059478 159 EDLERLEARFQQCVQAVSQLEEERDQLIHELVLLRepalQEVQQVHQDILAAYKLHAQAELERDGLREEIRTVKQKLFKV 238
Cdd:TIGR02168 684 EKIEELEEKIAELEKALAELRKELEELEEELEQLR----KELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTEL 759
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059478 239 TKECVAYQYQLECRQQDVAQFADCREALTTRAAQLSEELTQLRdacqkqkeqlqqqleapptqsdghflQESRRLSTQFE 318
Cdd:TIGR02168 760 EAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALR--------------------------EALDELRAELT 813
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059478 319 NLMAESRQGLEEeyepqLLRLLERKEAGTKALQDTQAEIQEMREALRPLEAEARQLQLQNRNLEDQITLVRQKRDEEVQQ 398
Cdd:TIGR02168 814 LLNEEAANLRER-----LESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEA 888
|
250 260 270
....*....|....*....|....*....|....*...
gi 47059478 399 YREQLEEMEERQRQLRSGVQVQQQKNKEMERLRMSLAE 436
Cdd:TIGR02168 889 LALLRSELEELSEELRELESKRSELRRELEELREKLAQ 926
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
198-446 |
1.41e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 53.23 E-value: 1.41e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059478 198 QEVQQVHQDILAAYKLHAQAELERDGLREEIRTVKQKLFKVTKECVAYQYQLECRQQDVAQfadcreaLTTRAAQLSEEL 277
Cdd:COG4942 27 AELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAE-------LEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059478 278 TQLRDACQKQKEQLQQQLEAPPTQ---SDGHFLQESRRLStqfenlmaesrqgLEEEYEPQLLRLLERKEAGTKALQDTQ 354
Cdd:COG4942 100 EAQKEELAELLRALYRLGRQPPLAlllSPEDFLDAVRRLQ-------------YLKYLAPARREQAEELRADLAELAALR 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059478 355 AEIQEMREALRPLEAEARQLQLQNRNLEDQITLVRQKRDEEVQQYREQLEEMEERQRQLRSgvQVQQQKNKEMERLRMSL 434
Cdd:COG4942 167 AELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEA--LIARLEAEAAAAAERTP 244
|
250
....*....|..
gi 47059478 435 AEELSTYKAMLP 446
Cdd:COG4942 245 AAGFAALKGKLP 256
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
212-454 |
5.16e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 49.28 E-value: 5.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059478 212 KLHAQAELERD--GLREEIRTVKQKLFkvTKECVAYQYQLECRQQDVAQFADCREALTTRAAQLSEELTQLRDACQKQKE 289
Cdd:TIGR02168 204 SLERQAEKAERykELKAELRELELALL--VLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEE 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059478 290 QLQQQL----EAPPTQSDghFLQESRRLSTQFENLMAESRQGLE--EEYEPQLLRLLERKEAGTKALQDTQAEIQEMREA 363
Cdd:TIGR02168 282 EIEELQkelyALANEISR--LEQQKQILRERLANLERQLEELEAqlEELESKLDELAEELAELEEKLEELKEELESLEAE 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059478 364 LRPLEAEARQLQLQNRNLEDQITLVRQKRDE----------EVQQYREQLEEMEERQRQLRsgvQVQQQKNKEMERLRMS 433
Cdd:TIGR02168 360 LEELEAELEELESRLEELEEQLETLRSKVAQlelqiaslnnEIERLEARLERLEDRRERLQ---QEIEELLKKLEEAELK 436
|
250 260
....*....|....*....|..
gi 47059478 434 -LAEELSTYKAMLPKSLEQADA 454
Cdd:TIGR02168 437 eLQAELEELEEELEELQEELER 458
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
163-450 |
2.21e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.98 E-value: 2.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059478 163 RLEARFQQCVQAVSQLEEERDQLIHELVLLRepalQEVQQVHQDILAAYKLHAQAELERDGLREEIRTVKQKLFKVtkec 242
Cdd:TIGR02169 671 SEPAELQRLRERLEGLKRELSSLQSELRRIE----NRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEEL---- 742
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059478 243 vayQYQLECRQQDVAQFADCREALTTRAAQLSEELTQLRDACQKQKEQLQQQLEAPPTQSDGHFLQESRRLSTQFENLMA 322
Cdd:TIGR02169 743 ---EEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQ 819
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059478 323 E-SRQGLEEEYEPQLLRLLERKEAGTKA-LQDTQAEIQEMREALRPLEAEARQLQLQNRNLEDQITLVRQKRDEEVQQYR 400
Cdd:TIGR02169 820 KlNRLTLEKEYLEKEIQELQEQRIDLKEqIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLR 899
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 47059478 401 eqleEMEERQRQLRSGVQVQQQKNKEMERLRMSLAEELSTYKAMLPKSLE 450
Cdd:TIGR02169 900 ----ELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEE 945
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
212-440 |
3.06e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.47 E-value: 3.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059478 212 KLHAQAE--LERDGLREEIRTVKQKLfkvtkecvaYQYQLECRQQDVAQFADCREALTTRAAQLSEELTQLRDACQKQKe 289
Cdd:COG1196 204 PLERQAEkaERYRELKEELKELEAEL---------LLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELR- 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059478 290 qlqqqleapptqsdghflQESRRLSTQFENLMAESRQGLEE--EYEPQLLRLLERKEAGTKALQDTQAEIQEMREALRPL 367
Cdd:COG1196 274 ------------------LELEELELELEEAQAEEYELLAElaRLEQDIARLEERRRELEERLEELEEELAELEEELEEL 335
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 47059478 368 EAEARQLQLQNRNLEDQITLVRQKRDEEVQQYREQLEEMEERQRQLRSGVQVQQQKNKEMERLRMSLAEELST 440
Cdd:COG1196 336 EEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEA 408
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
159-445 |
3.45e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.60 E-value: 3.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059478 159 EDLERLEARFQQCVQAVSQLEEERDQLIHELVLLREPALQEVQQVHQDILAAYKLHAQAELERDGLREEIRTVKQKLFKV 238
Cdd:TIGR02169 184 ENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISEL 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059478 239 TKECVAYQYQLECRQQDVAQFADCRE-ALTTRAAQLSEELTQLRDACQKQKEQLQ--QQLEAPPTQSDGHFLQESRRLST 315
Cdd:TIGR02169 264 EKRLEEIEQLLEELNKKIKDLGEEEQlRVKEKIGELEAEIASLERSIAEKERELEdaEERLAKLEAEIDKLLAEIEELER 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059478 316 QFENLMAESRQgLEEEY---EPQLLRLLERKEAGTKALQDTQAEIQEMREALRPLEAEARQLQLQNRNLEDQitlvRQKR 392
Cdd:TIGR02169 344 EIEEERKRRDK-LTEEYaelKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEE----LQRL 418
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 47059478 393 DEEVQQYREQLEEMEERQRQLRSGVQVQQQKNKEMERLRMSLAEELSTYKAML 445
Cdd:TIGR02169 419 SEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQEL 471
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
323-443 |
9.70e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.93 E-value: 9.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059478 323 ESRQGLEEEYEPQLLRLLERKEAGTKALQDTQAEIQEMREALRPLEAEARQLQLQNRNLEDQITLVRQKRDEEVQQYREQ 402
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRREL 314
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 47059478 403 LEEMEERQRQLRSGVQVQQQKNKEMERLRMSLAEELSTYKA 443
Cdd:COG1196 315 EERLEELEEELAELEEELEELEEELEELEEELEEAEEELEE 355
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
161-405 |
1.27e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.52 E-value: 1.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059478 161 LERLEARFQQCVQAVSQLEEERDQLIHELvllrePALQEVQQVHQDILAayklHAQAELERDGLREEIRTVKQKLFKVTK 240
Cdd:COG4913 612 LAALEAELAELEEELAEAEERLEALEAEL-----DALQERREALQRLAE----YSWDEIDVASAEREIAELEAELERLDA 682
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059478 241 ---ECVAYQYQLECRQQDVAQFADCREALTTRAAQLSEELTQLRDACQKQKEQLQQQLEAPPTQS----DGHFLQES--- 310
Cdd:COG4913 683 ssdDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELrallEERFAAALgda 762
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059478 311 --RRLSTQFENLMA---ESRQGLEEEYEPQLLRLLERKEAGTKALQDTQAEIQEMREALRPLEA------EARQLQLQNR 379
Cdd:COG4913 763 veRELRENLEERIDalrARLNRAEEELERAMRAFNREWPAETADLDADLESLPEYLALLDRLEEdglpeyEERFKELLNE 842
|
250 260
....*....|....*....|....*.
gi 47059478 380 NLEDQITLVRQKRDEEVQQYREQLEE 405
Cdd:COG4913 843 NSIEFVADLLSKLRRAIREIKERIDP 868
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
160-431 |
1.95e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 44.28 E-value: 1.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059478 160 DLERLEARFQQCVQAVSQLEEERDQLIHELVLLREpalqEVQQVHQDILAAYKLHAQAELERDGLREEIRTVKQKLFKVT 239
Cdd:TIGR02168 226 ELALLVLRLEELREELEELQEELKEAEEELEELTA----ELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLE 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059478 240 KECVAYQYQLECRQQDVAQFADCREALTTRAAQLSEELTQLRDACQKQKEQLQQQLEAPPTQSDGHFLQESRR--LSTQF 317
Cdd:TIGR02168 302 QQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLeeLEEQL 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059478 318 ENLMAESRQGLEEEY--EPQLLRLLERKEAGTKALQDTQAEIQEMREALRPLEAEARQLQLQ--NRNLEDQITLVRQKRd 393
Cdd:TIGR02168 382 ETLRSKVAQLELQIAslNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEelEEELEELQEELERLE- 460
|
250 260 270
....*....|....*....|....*....|....*...
gi 47059478 394 EEVQQYREQLEEMEERQRQLRSGVQVQQQKNKEMERLR 431
Cdd:TIGR02168 461 EALEELREELEEAEQALDAAERELAQLQARLDSLERLQ 498
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
159-418 |
4.41e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.12 E-value: 4.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059478 159 EDLERLEARFQQCVQAVSQLEEERDQL----------IHELVLLREPALQEVQQVHQDILAAYKLHAQAELERDGLREEI 228
Cdd:TIGR02168 733 KDLARLEAEVEQLEERIAQLSKELTELeaeieeleerLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAEL 812
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059478 229 RTVKQKLFKVT--------------KECVAYQYQLECRQQDVAQFADCREALTTRAAQLSEELTQLRDACQKQKeqlqqq 294
Cdd:TIGR02168 813 TLLNEEAANLRerleslerriaateRRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLE------ 886
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059478 295 leapptqsdghflQESRRLSTQFENLMAESRQGLEE--EYEPQLLRLLERKEAGTKALQDTQAEIQEMREALR------- 365
Cdd:TIGR02168 887 -------------EALALLRSELEELSEELRELESKrsELRRELEELREKLAQLELRLEGLEVRIDNLQERLSeeysltl 953
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 47059478 366 -PLEAEARQLQLQNRNLEDQITLVRQKRD----------EEVQQYREQLEEMEERQRQLRSGVQ 418
Cdd:TIGR02168 954 eEAEALENKIEDDEEEARRRLKRLENKIKelgpvnlaaiEEYEELKERYDFLTAQKEDLTEAKE 1017
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
177-452 |
4.49e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.00 E-value: 4.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059478 177 QLEEERDQLIHELVLLR-EPALQEVQQVHQDILAAYKLHAQAELERDGLREEIRTVKQKLFKVTKECVAYQYQLECRQQD 255
Cdd:COG1196 217 ELKEELKELEAELLLLKlRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059478 256 VAQFADCREALTTRAAQLSEELTQLrdacqkqkeqlqqqleapptqsdghflQESRRLSTQFENLMAESRQGLEEEYEPQ 335
Cdd:COG1196 297 LARLEQDIARLEERRRELEERLEEL---------------------------EEELAELEEELEELEEELEELEEELEEA 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059478 336 LLRLLERKEAGTKALQDTQAEIQEMREALRPLEAEARQL------QLQNRNLEDQITLVRQKRDEEVQQYREQLEEMEER 409
Cdd:COG1196 350 EEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELlealraAAELAAQLEELEEAEEALLERLERLEEELEELEEA 429
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 47059478 410 QRQLRSGVQVQQQKNKEMERLRMSLAEELSTYKAMLPKSLEQA 452
Cdd:COG1196 430 LAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEA 472
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
306-458 |
4.68e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 42.74 E-value: 4.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059478 306 FLQESRRLSTQFENLMAESRQGLE--EEYEPQLLRLLERKEAGTKALQDTQAEIQEMREALRPLEAEARQLQLQNRNLED 383
Cdd:TIGR02168 244 LQEELKEAEEELEELTAELQELEEklEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEA 323
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 47059478 384 QITLVRQKRD---EEVQQYREQLEEMEERQRQLRSGVQVQQQKNKEMERLRMSLAEELSTYKAMLPKSLEQADAPTSQ 458
Cdd:TIGR02168 324 QLEELESKLDelaEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNE 401
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
159-437 |
5.17e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 42.64 E-value: 5.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059478 159 EDLERLEARFQQCVQAVSQLEEERDQLIHELVLLREPALQeVQQVHQDILAAYKLHAQAELERDGLREEIRTVKQKLFKV 238
Cdd:PRK04863 376 EQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQ-YQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEA 454
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059478 239 TKECVAYQYQLECRQQDVAQFADCREALTTRAAQLSEELTQ--LRDACQKQKEQLQQQLEAPPTQSDGHFLQESRRLSTQ 316
Cdd:PRK04863 455 TEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWdvARELLRRLREQRHLAEQLQQLRMRLSELEQRLRQQQR 534
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059478 317 FENLMAE--SRQGLEEEYEPQLLRLLERKEAGTKALQDTQAEIQEMREALRpleAEARQLQLQNRNLEdQITLVRQKRDE 394
Cdd:PRK04863 535 AERLLAEfcKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALR---QQLEQLQARIQRLA-ARAPAWLAAQD 610
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 47059478 395 EVQQYREQLEEMEERQRQLRSGVQVQQQKNKEMERLRMSLAEE 437
Cdd:PRK04863 611 ALARLREQSGEEFEDSQDVTEYMQQLLERERELTVERDELAAR 653
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
153-405 |
6.95e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.21 E-value: 6.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059478 153 EDPLSVEDLERLEARFQQCVQAVSQLEEERDQLIHelvllrepaLQEVQQVHQDILAAYKLHAQAELERDGLREEIRTVK 232
Cdd:COG4913 219 EEPDTFEAADALVEHFDDLERAHEALEDAREQIEL---------LEPIRELAERYAAARERLAELEYLRAALRLWFAQRR 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059478 233 QKLfkvtkecvaYQYQLECRQQDVAQFADCREALTTRAAQLSEELTQLRDACQKQKEQLQQQLEAPPTQSDGHfLQESRR 312
Cdd:COG4913 290 LEL---------LEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERE-LEERER 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059478 313 LSTQFENLMA-------ESRQGLEEEYEpQLLRLLERKEAGTKALQDTQAE----IQEMREALRPLEAEARQLQLQNRNL 381
Cdd:COG4913 360 RRARLEALLAalglplpASAEEFAALRA-EAAALLEALEEELEALEEALAEaeaaLRDLRRELRELEAEIASLERRKSNI 438
|
250 260
....*....|....*....|....
gi 47059478 382 edqitlvrqkrDEEVQQYREQLEE 405
Cdd:COG4913 439 -----------PARLLALRDALAE 451
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
251-465 |
1.15e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.58 E-value: 1.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059478 251 CRQQDVAQFADCREALTTRAAQLSEELTQLRDACQKQKEQLQQQLEAPPTQSdghflQESRRLSTQFENLMAESRQgLEE 330
Cdd:TIGR02168 674 ERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELS-----RQISALRKDLARLEAEVEQ-LEE 747
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059478 331 EYEPQLLRLLERKEAGTKALQdtqaEIQEMREALRPLEAEARQLQLQNRNLEDQITLVRQKRDE----------EVQQYR 400
Cdd:TIGR02168 748 RIAQLSKELTELEAEIEELEE----RLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDElraeltllneEAANLR 823
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 47059478 401 EQLEEMEERQRQLRSGVQVQQQKNKEMERLRMSLAEELSTYKAMLPKSLEQADAPTSQAGGVEAQ 465
Cdd:TIGR02168 824 ERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEA 888
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
84-437 |
1.91e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 40.89 E-value: 1.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059478 84 DESRQPDEALGLEEPVRPEEMLSVEESVTPDEVQISE--QPVEPAKSPT-----ACEGEMVATEGSLPAQPIPNTEEDPL 156
Cdd:PTZ00121 1339 EEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEakKKADAAKKKAeekkkADEAKKKAEEDKKKADELKKAAAAKK 1418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059478 157 SVEDLERLEARFQQCVQAVSQLEEERDQliHELVLLREPA--LQEVQQVHQDILAAYKLHAQAELER--DGLREEIRTVK 232
Cdd:PTZ00121 1419 KADEAKKKAEEKKKADEAKKKAEEAKKA--DEAKKKAEEAkkAEEAKKKAEEAKKADEAKKKAEEAKkaDEAKKKAEEAK 1496
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059478 233 QKLFKVTKECVAYQYQLECRQQDVAQFAD-------CREALTTRAAQLSEELTQLRDA--CQKQKEQLQQQLEAPPTQSD 303
Cdd:PTZ00121 1497 KKADEAKKAAEAKKKADEAKKAEEAKKADeakkaeeAKKADEAKKAEEKKKADELKKAeeLKKAEEKKKAEEAKKAEEDK 1576
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059478 304 GHFLQESRRLSTQFENLMAESRQGLEEEYEPQLLRLLERKEAGTKALQDTQAE-IQEMREALRPLEAEARQLQLQNRNLE 382
Cdd:PTZ00121 1577 NMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEeEKKKVEQLKKKEAEEKKKAEELKKAE 1656
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 47059478 383 DQITLVRQ---KRDEEVQQYREQLEEMEERQRQLRSGVQVQQQKNKEMERLRMSLAEE 437
Cdd:PTZ00121 1657 EENKIKAAeeaKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEE 1714
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
248-443 |
2.56e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.28 E-value: 2.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059478 248 QLECRQQDVAQFADCREALTTRAAQLSEE---LTQLRDACQKQKEQLQQQLEAPPTQsdghflQESRRLSTQFENLMAES 324
Cdd:COG4913 611 KLAALEAELAELEEELAEAEERLEALEAEldaLQERREALQRLAEYSWDEIDVASAE------REIAELEAELERLDASS 684
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059478 325 rqgleeeyePQLLRLLERKEAGTKALQDTQAEIQEMREALRPLEAEARQLQLQNRNLEDQitlVRQKRDEEVQQYREQLE 404
Cdd:COG4913 685 ---------DDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDR---LEAAEDLARLELRALLE 752
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 47059478 405 EM------EERQRQLRSGVQVQQQK-NKEMERLRMSLAEELSTYKA 443
Cdd:COG4913 753 ERfaaalgDAVERELRENLEERIDAlRARLNRAEEELERAMRAFNR 798
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
339-451 |
3.21e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 39.76 E-value: 3.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059478 339 LLERKEAGTKALQDTQAEIQEMREALRPLEaeaRQLQLQNRNLEDQITLVRQKRDE---EVQQYREQLEEMEERQRQLRs 415
Cdd:PRK12704 59 LLEAKEEIHKLRNEFEKELRERRNELQKLE---KRLLQKEENLDRKLELLEKREEElekKEKELEQKQQELEKKEEELE- 134
|
90 100 110
....*....|....*....|....*....|....*..
gi 47059478 416 gvQVQQQKNKEMERLrMSL-AEELstyKAMLPKSLEQ 451
Cdd:PRK12704 135 --ELIEEQLQELERI-SGLtAEEA---KEILLEKVEE 165
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
345-438 |
3.53e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.75 E-value: 3.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059478 345 AGTKALQDTQAEIQEMREALRPLEAEARQLQLQNRNLEDQITLVRQKRDEEVQQYREQLEEMEERQRQLRSGVQVQQQKN 424
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90
....*....|....
gi 47059478 425 KEMERLRMSLAEEL 438
Cdd:COG4942 97 AELEAQKEELAELL 110
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
159-415 |
3.64e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.05 E-value: 3.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059478 159 EDLERLEARFQQCVQAVSQLEEERDQLIHELVLLREPALQEVQ-QVH---------QDILAAYKLHAQ-AELERDGLREE 227
Cdd:TIGR02169 251 EELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKeKIGeleaeiaslERSIAEKERELEdAEERLAKLEAE 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059478 228 IRTVKQKLFKVTKECVAYQYQLECRQQDVAQFADCREALTTRAAQLSEELTQLRDacqkqkeqlqqqleapptqsdghfl 307
Cdd:TIGR02169 331 IDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRD------------------------- 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059478 308 qESRRLSTQFENLMAEsrqglEEEYEPQLLRLLERKEAGTKALQDTQAEIQEMREALRPLEAEARQLQLQNRNLEDQITL 387
Cdd:TIGR02169 386 -ELKDYREKLEKLKRE-----INELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQ 459
|
250 260 270
....*....|....*....|....*....|.
gi 47059478 388 VRQKRDEEVQQY---REQLEEMEERQRQLRS 415
Cdd:TIGR02169 460 LAADLSKYEQELydlKEEYDRVEKELSKLQR 490
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
330-436 |
3.94e-03 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 39.12 E-value: 3.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059478 330 EEYEPQLLRLLERKEAGTKALQDTQAEIQEMREALRPLEAEARQLQLQNRNLEDQITLVRQKRDE---EVQQYREQLEEM 406
Cdd:COG1340 4 DELSSSLEELEEKIEELREEIEELKEKRDELNEELKELAEKRDELNAQVKELREEAQELREKRDElneKVKELKEERDEL 83
|
90 100 110
....*....|....*....|....*....|
gi 47059478 407 EERQRQLRSGVQVQQQKNKEMERLRMSLAE 436
Cdd:COG1340 84 NEKLNELREELDELRKELAELNKAGGSIDK 113
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
157-384 |
5.22e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 39.65 E-value: 5.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059478 157 SVEDLERLEARFQQCVQAVSQLE---EERDQLIHELVLLREPALQEVQQVHQDILAAYKLHAQAELERDGLREEIRTVKQ 233
Cdd:TIGR02168 251 AEEELEELTAELQELEEKLEELRlevSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELES 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059478 234 KLFKVTKECVAYQYQLECRQQDVAQ-------FADCREALTTRAAQLSEELTQLRDACQKQKEQLQ------QQLEAPPT 300
Cdd:TIGR02168 331 KLDELAEELAELEEKLEELKEELESleaeleeLEAELEELESRLEELEEQLETLRSKVAQLELQIAslnneiERLEARLE 410
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059478 301 QSDGH---FLQESRRLSTQFENLMAESRQGLEEEYEPQLLRLLERKEAGTKALQDTQAEIQEMREALRPLEAEARQLQLQ 377
Cdd:TIGR02168 411 RLEDRrerLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQAR 490
|
....*..
gi 47059478 378 NRNLEDQ 384
Cdd:TIGR02168 491 LDSLERL 497
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
102-283 |
5.83e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 39.28 E-value: 5.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059478 102 EEMLSVEESVTPDEVQISEQPVEPAKSPTACEGEMVATEgSLPAQPIPNTEEDPLSVEDLERLEARFQQCVQAVSQLEEE 181
Cdd:TIGR02169 315 RELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRD-KLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREK 393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059478 182 RDQLIHE----------LVLLREPALQEVQQVHQDILAAYKLHAQAELERDGLREEIRTVKQKLFKVTKECVAYQYQLEC 251
Cdd:TIGR02169 394 LEKLKREinelkreldrLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYD 473
|
170 180 190
....*....|....*....|....*....|..
gi 47059478 252 RQQDVAQFADCREALTTRAAQLSEELTQLRDA 283
Cdd:TIGR02169 474 LKEEYDRVEKELSKLQRELAEAEAQARASEER 505
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
215-421 |
6.29e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 39.23 E-value: 6.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059478 215 AQAELERDGLREEIRTVKQKLFKVTKECVAYQyqlecRQQDVAQFADCREALTTRAAQLSEELTQLRDACQKQK------ 288
Cdd:COG3206 171 EEARKALEFLEEQLPELRKELEEAEAALEEFR-----QKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEarlaal 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059478 289 -EQLQQQLEAPPTQSDGHFLQESRRLSTQFENLMAESRQGLEEEYePQLLRLLERKEA--------GTKALQDTQAEIQE 359
Cdd:COG3206 246 rAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAELSARYTPNH-PDVIALRAQIAAlraqlqqeAQRILASLEAELEA 324
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 47059478 360 MREALRPLEAEARQLQLQNRNL-EDQITLVRQKRDeeVQQYREQLEEMEERQRQLRSGVQVQQ 421
Cdd:COG3206 325 LQAREASLQAQLAQLEARLAELpELEAELRRLERE--VEVARELYESLLQRLEEARLAEALTV 385
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
330-437 |
6.33e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 39.07 E-value: 6.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059478 330 EEYEPQLLRLLERKEAGTKALQDTQAEIQEMREALRPLEAEARQLQlQNRNLEDQITLVRQKRDEEVQQYREQLEEMEER 409
Cdd:COG2433 409 TEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERELSEAR-SEERREIRKDREISRLDREIERLERELEEERER 487
|
90 100
....*....|....*....|....*...
gi 47059478 410 QRQLRSgvqvqqqKNKEMERLRMSLAEE 437
Cdd:COG2433 488 IEELKR-------KLERLKELWKLEHSG 508
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
320-437 |
8.25e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 38.21 E-value: 8.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059478 320 LMAESRQGLEEEYEPQLLRLLERKEAGTKALQDTQAEIQEMREALRPLEAEARQLQLQNRNLEDQITLVrQKRDEEVQQY 399
Cdd:COG4942 13 LAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAAL-EAELAELEKE 91
|
90 100 110
....*....|....*....|....*....|....*...
gi 47059478 400 REQLEEMEERQRQLRSGVQVQQQKNKEMERLRMSLAEE 437
Cdd:COG4942 92 IAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPE 129
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
159-418 |
9.53e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 38.48 E-value: 9.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059478 159 EDLERLEARFQQCVQAVSQLEEERDQLIHELVLLREpalqEVQQVHQDILAAYKLHAQAELERDGLREEIRTVKQKLfKV 238
Cdd:PRK02224 363 EEAAELESELEEAREAVEDRREEIEELEEEIEELRE----RFGDAPVDLGNAEDFLEELREERDELREREAELEATL-RT 437
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059478 239 TKECVAYQYQL-------ECRQQ-----DVAQFADCREalttRAAQLSEELTQLRDACQKQKEQLQQQLEAPPTQSDGHF 306
Cdd:PRK02224 438 ARERVEEAEALleagkcpECGQPvegspHVETIEEDRE----RVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIER 513
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059478 307 LQESRRLSTQfenLMAESRQGLEEEYEpQLLRLLERKEA------------------------GTKALQDTQAEIQEMRE 362
Cdd:PRK02224 514 LEERREDLEE---LIAERRETIEEKRE-RAEELRERAAEleaeaeekreaaaeaeeeaeeareEVAELNSKLAELKERIE 589
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 47059478 363 ALRPLEAEARQLQlqnrNLEDQITLVRQKRD---EEVQQYREQLEEMEERQRQLRSGVQ 418
Cdd:PRK02224 590 SLERIRTLLAAIA----DAEDEIERLREKREalaELNDERRERLAEKRERKRELEAEFD 644
|
|
| |
