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Conserved domains on  [gi|11024676|ref|NP_067606|]
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ninjurin-2 [Rattus norvegicus]

Protein Classification

ninjurin family protein( domain architecture ID 10522739)

ninjurin family protein similar to mammalian ninjurin-1 and ninjurin-2, which are homophilic cell adhesion molecules that promote axonal growth, and may play roles in nerve regeneration and in the formation and function of other tissues

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ninjurin pfam04923
Ninjurin; Ninjurin (nerve injury-induced protein) is involved in nerve regeneration and in the ...
 26-127 2.18e-42

Ninjurin; Ninjurin (nerve injury-induced protein) is involved in nerve regeneration and in the formation and function in some tissues.


:

Pssm-ID: 461482  Cd Length: 102  Bit Score: 135.71  E-value: 2.18e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024676    26 LNHYATKKSVAESMLDVALFMSNAMRLKSVLEQGPFSQYYTTLLTLISASLLLQVVIGILLVVIARLNLNEVENQWRLNQ 105
Cdd:pfam04923   1 LNRYATKKTIAQGMLDIALLTANASQLKYVLEVGPGHKFYYFLLVLISLSIVLQVVVGILLIFIARLNINKEREQRRANR 80

                          90       100
                  ....*....|....*....|..
gi 11024676   106 LNNAATTLVFITVVINIFITAF 127
Cdd:pfam04923  81 LNNVATILVFIITVINVFISAF 102
 
Name Accession Description Interval E-value
Ninjurin pfam04923
Ninjurin; Ninjurin (nerve injury-induced protein) is involved in nerve regeneration and in the ...
 26-127 2.18e-42

Ninjurin; Ninjurin (nerve injury-induced protein) is involved in nerve regeneration and in the formation and function in some tissues.


Pssm-ID: 461482  Cd Length: 102  Bit Score: 135.71  E-value: 2.18e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024676    26 LNHYATKKSVAESMLDVALFMSNAMRLKSVLEQGPFSQYYTTLLTLISASLLLQVVIGILLVVIARLNLNEVENQWRLNQ 105
Cdd:pfam04923   1 LNRYATKKTIAQGMLDIALLTANASQLKYVLEVGPGHKFYYFLLVLISLSIVLQVVVGILLIFIARLNINKEREQRRANR 80

                          90       100
                  ....*....|....*....|..
gi 11024676   106 LNNAATTLVFITVVINIFITAF 127
Cdd:pfam04923  81 LNNVATILVFIITVINVFISAF 102
 
Name Accession Description Interval E-value
Ninjurin pfam04923
Ninjurin; Ninjurin (nerve injury-induced protein) is involved in nerve regeneration and in the ...
 26-127 2.18e-42

Ninjurin; Ninjurin (nerve injury-induced protein) is involved in nerve regeneration and in the formation and function in some tissues.


Pssm-ID: 461482  Cd Length: 102  Bit Score: 135.71  E-value: 2.18e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 11024676    26 LNHYATKKSVAESMLDVALFMSNAMRLKSVLEQGPFSQYYTTLLTLISASLLLQVVIGILLVVIARLNLNEVENQWRLNQ 105
Cdd:pfam04923   1 LNRYATKKTIAQGMLDIALLTANASQLKYVLEVGPGHKFYYFLLVLISLSIVLQVVVGILLIFIARLNINKEREQRRANR 80

                          90       100
                  ....*....|....*....|..
gi 11024676   106 LNNAATTLVFITVVINIFITAF 127
Cdd:pfam04923  81 LNNVATILVFIITVINVFISAF 102
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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