|
Name |
Accession |
Description |
Interval |
E-value |
| ND4 |
MTH00062 |
NADH dehydrogenase subunit 4; Provisional |
8-423 |
1.34e-123 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214413 [Multi-domain] Cd Length: 417 Bit Score: 364.63 E-value: 1.34e-123
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 8 FYWFLTGFIVTFIYLLIFyVWIWYSNCSMMILGVkNYLCGGWVILDNLSCLMLTLTLIICL------VLWLVEVKSVVLY 81
Cdd:MTH00062 1 FYFFSVGFFLGFLLLLLF-CLLYSSGVGCCILVV-NNVFNGLFIFDSLSFYLILLVLFLGLysqvmfYNLLSGVSRFFLF 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 82 ISIASSMVTYVVSNSLVFWFFYELSIISALYLLIVNSPYPERYVSSWYFGGYIILGSVPLLVGICFVGLSNGSFNVIMWG 161
Cdd:MTH00062 79 LSLIFSILCFCVNNSLLFWFFYELSIIPLLYLLFSESPYSERYLASWYFLGYLLLTSLPLLLCLLYLSLVNGSFNFSDWG 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 162 NEGSEISSMYLLIILIFLTKIPVFPFHGWLPLVHAEASSPVSIILSGYIMKLGLVGLVRLCGCVLVDYLYGYSIFLLGYS 241
Cdd:MTH00062 159 SDDSVSLIVYYVLSFMFITKVPLFPFHTWLPIVHAEASSPVSIFLSGYIMKLGLLGVYRFCGFIFSGSFLGYLFLCCLFS 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 242 VVYLIAAMLECDAKRWLAYLSLSHMLIGMCILLSSSYCGDYYAFVYCLGHGLSVCLSFMIIWFGYEISGSRNWSILVKII 321
Cdd:MTH00062 239 VFFLITACSELDGKRWLAFLSLSHILVPVLGLFVGDWSSINLSFFYCLGHGLSAGLVFLLLWCFYEVSGSRNWVLLKSGI 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 322 GGGLIMHVVAGFIFLNVCGFPPTLQFFGELWLVINYVTIsdFICLILVSIYIFSGSIIGFIVYGLIICSPGNMSYEyNGG 401
Cdd:MTH00062 319 NGSLVLRVIVVFSFLSLCSFPPTIQFFCEVFLVSSSFGV--LVYLLFWCFYLFFGGLVPLILLGHLLIRSESYESI-NVS 395
|
410 420
....*....|....*....|..
gi 12249135 402 LDNLLSCIIYLSLLNLFLFIVI 423
Cdd:MTH00062 396 NYSYLFFLIFLVFWCYLGFLVL 417
|
|
| NuoM |
COG1008 |
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ... |
52-388 |
4.77e-25 |
|
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440632 [Multi-domain] Cd Length: 488 Bit Score: 106.70 E-value: 4.77e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 52 LDNLSCLMLTLT----LIICLVLWLVEVKSVVLY-----ISIASSMVTYVVSNSLVFWFFYELSIISaLYLLIVNSPYPE 122
Cdd:COG1008 80 VDGISLPLVLLTalltPLAILASWNEIKKRPKLYyalllLLEAGMIGVFLALDLFLFYVFWELMLIP-MYFLIGIWGGER 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 123 RYVSSWYFGGYIILGSVPLLVGICFVGLSNG--SFNVIMWGNEGSEISSMYLLIILIFL---TKIPVFPFHGWLPLVHAE 197
Cdd:COG1008 159 RIYAAIKFFLYTLAGSLLMLVAILALYFLAGalTFDIAELAAAPLPLTAQLLLFLAFFIafaVKVPMFPFHTWLPDAHVE 238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 198 ASSPVSIILSGYIMKLGLVGLVRLCGCVLVDYLYGYSIFLLGYSVVYLI----AAMLECDAKRWLAYLSLSHM---LIGM 270
Cdd:COG1008 239 APTAGSVLLAGVLLKMGGYGLLRFALPLFPEASAYFAPLLAALGVIGIIygalVALAQTDLKRLIAYSSVSHMgfvLLGI 318
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 271 CILLSSSYCGdyyAFVYCLGHGLSVCLSFMIIWFGYEISGSRNWSILvkiigGGLI--MHVVAGF---IFLNVCGFPPTL 345
Cdd:COG1008 319 FALNPLGLQG---AVLQMVSHGLITAALFLLVGVLYDRTHTRDIADL-----GGLAkrMPVLAALfllAALASLGLPGTS 390
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 12249135 346 QFFGELwlvinyvtisdficLILVSIYIFSGSIIGFIVYGLII 388
Cdd:COG1008 391 GFVGEF--------------LVLLGAFQVNPWLAILAALGLIL 419
|
|
| ND4 |
MTH00206 |
NADH dehydrogenase subunit 4; Provisional |
8-421 |
2.18e-24 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214458 [Multi-domain] Cd Length: 450 Bit Score: 104.64 E-value: 2.18e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 8 FYWFLTGFIVTFIYLLIFYVWIWYSNCSMMIlgVKNYLCGGWV--ILDNLSCLMLTLTLIICLVLWLVE-VKSVVLYISI 84
Cdd:MTH00206 20 WLWRSTTFFSFLIALLFLLWFKWSSEVGWSF--SNLYLSYDPLssPLVILSCWLLPLMFLASQNHMKNEpINRQRIYITL 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 85 ASSMVTYVV-----SNSLVFWFFYELSIISALYLLIVNSPYPERYVSSWYFGGYIILGSVPLLVGICFVGLSNGSFNVIM 159
Cdd:MTH00206 98 LIVLQLFLIlffssSNLLLFYILFEASLIPTLLLITRWGNQKERLNAGYYFLFYTLIGSLPLLIALLFLQNSLGSLSLYI 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 160 WGNEGSEISS---MYLLIILIFLTKIPVFPFHGWLPLVHAEASSPVSIILSGYIMKLGLVGLVRLCgCVLVDYLYGYSIF 236
Cdd:MTH00206 178 LYFSKLTTWNnnlWWLACILAFLVKLPLYGVHLWLPKAHVEAPVAGSMVLAGVLLKLGGYGMMRII-LILGPSTKLSSYF 256
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 237 LLGYSVVYLIAAMLEC----DAKRWLAYLSLSHMLIGMCILLSSSYCGDYYAFVYCLGHGLSVCLSFMIIWFGYEISGSR 312
Cdd:MTH00206 257 FIILGLWGSIMTSSIClrqtDLKSLIAYSSVSHMSLVTAGILSGSPWGFKGALLLMIAHGLVSSALFCLANLLYERSHTR 336
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 313 NWSILvkiiGGGLIMHVVAGFIFLNVC----GFPPTLQFFGELWLVINYVTISDFICLILVSIYIFSGsIIGFIVYGLII 388
Cdd:MTH00206 337 TILGN----RGLQMILPLLSFWWLLFFlanlGLPPFPNLFGELLIITSLFSWSNFTLPLLGLGFLFTA-IYSLYMFVMTQ 411
|
410 420 430
....*....|....*....|....*....|...
gi 12249135 389 CSPGNMSYEYNGGLDNLLSCIIYLSLLNLFLFI 421
Cdd:MTH00206 412 HGKTPNHLLSLSPSSTREHLLLFLHLFPVILLI 444
|
|
| ND4 |
MTH00150 |
NADH dehydrogenase subunit 4; Provisional |
44-376 |
2.39e-23 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214435 [Multi-domain] Cd Length: 417 Bit Score: 101.07 E-value: 2.39e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 44 YLCGGWVILDNLSCLMLTLTLIICLVLWLVEVKSVVLYISIAS-----------SMVTYVVSNSLVFWFFYELSIISALY 112
Cdd:MTH00150 14 ESLSELFSVDSMSSLLISLSLWISGLMMLASQKSVKLRNKSSSfsllvlllcliLVLAFSVSSLLMFYFFFEASLIPTLL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 113 LLIVNSPYPERYVSSWYFGGYIILGSVPLLVGICFVGLSNGSFN---VIMWGNEGSEISSMYLLIILIFLTKIPVFPFHG 189
Cdd:MTH00150 94 LILGWGYQPERLQAGMYMMLYTVGASLPLLLVILWMSSSYGSSFmllISSLRKLLSSMGLWGLLVFLAFLVKLPMYPFHL 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 190 WLPLVHAEASSPVSIILSGYIMKLGLVGLVRLCGCVLVdYLYGYSIFLLGYSVVYLIAAMLEC----DAKRWLAYLSLSH 265
Cdd:MTH00150 174 WLPKAHVEAPVAGSMILAGILLKLGGYGILRMMMVFSL-SSSSFSIFLISLSLWGGVLTSLIClrqsDVKSLIAYSSVGH 252
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 266 MLIGMCILLSSSYCGDYYAFVYCLGHGLSVCLSFMIIWFGYEISGSRNwsiLVKIIGGGLIMHVVAGFIFLNVC---GFP 342
Cdd:MTH00150 253 MSLVLAGVLSNTSWGWVGALIMMVSHGFCSSGLFCLANYTYEKVHSRS---LFLSKGMLMLYPSLSLWWFLFCIinmAAP 329
|
330 340 350
....*....|....*....|....*....|....
gi 12249135 343 PTLQFFGELWLVINYVTISDFICLILVSIYIFSG 376
Cdd:MTH00150 330 PSLNLLSEIMIFPSLISYSPWFFVPLGLMVFLSG 363
|
|
| ND4 |
MTH00163 |
NADH dehydrogenase subunit 4; Provisional |
1-395 |
2.58e-23 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214443 [Multi-domain] Cd Length: 445 Bit Score: 101.38 E-value: 2.58e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 1 MSGFFAYFYWFLTGFIVTFIYLLIFYVWIWYSNCSMMIlgvknYLCGGWVILDNLSCLMLTLTLIICL--VLWLVEVKSV 78
Cdd:MTH00163 8 LLFLIPLCFLKNSWWLVQSLLFLLSFLFMLLFSLSFYF-----SNISYFFGLDLLSFGLILLSFWICMlmILSSESVYKK 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 79 VLYISIASSMV---------TYVVSNSLVFWFFYELSIISALYLLIVNSPYPERYVSSWYFGGYIILGSVPLLVGICFVG 149
Cdd:MTH00163 83 NNYSNLFLFLIlflliflllTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFYLY 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 150 LSNGSFNVIMWGNEGSEISSMYLLIILIFLTKIPVFPFHGWLPLVHAEASSPVSIILSGYIMKLGLVGLVRLCGcVLVDY 229
Cdd:MTH00163 163 NNSGSLSFFLLNFFGSLNFLWYLSMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVMS-FFSKL 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 230 LYGYSIFLLGYSVVYLIAAMLEC----DAKRWLAYLSLSHMLIGMCILLSSSYCGDYYAFVYCLGHGLS----VCLSFMI 301
Cdd:MTH00163 242 GLKFNYIWISISLVGGVIVSLIClrqvDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCssglFCLANII 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 302 iwfgYEISGSRNwsiLVKIIGGGLIMHVVAGFIFLNVC---GFPPTLQFFGELWLVINYVTISDFICLILV--------- 369
Cdd:MTH00163 322 ----YERLGSRS---LLINKGLLNFMPSMSLWWFLLSSsnmAAPPSLNLLGEISLINSLISWSKLSMIFLMllsffsaay 394
|
410 420
....*....|....*....|....*.
gi 12249135 370 SIYIFSGSIIGFIVYGLIICSPGNMS 395
Cdd:MTH00163 395 SLYLYSYSQHGKYYSGLYSCSSGKVR 420
|
|
| HyfB |
COG0651 |
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ... |
40-354 |
2.03e-20 |
|
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 92.52 E-value: 2.03e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 40 GVKNYLCGGWV-------ILDNLSCLMLTLTLIICLVL------WLVEVKSVVLY-----ISIASSMVTYVVSNSLVFWF 101
Cdd:COG0651 55 GPLVYALGGWPapfgivlVADRLSALFLLLTALVALAVllysigYMRHERRGRRFyplflLLLAGMNGAFLTGDLFNLFV 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 102 FYELSIISAlYLLIVNSPYPERYVSSWYFGGYIILGSVPLLVGICFVGLSNGSFNVIMWGNEGSEISSMYLLIILI---- 177
Cdd:COG0651 135 FFEVMLLAS-YGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAARLAELDPGLLLAAFAlllv 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 178 -FLTKIPVFPFHGWLPLVHAEASSPVSIILSGYIMKLGLVGLVRLCGCVL-VDYLYGYSIFLLGYSVVYLIA----AMLE 251
Cdd:COG0651 214 gFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLTKVGVYAILRVLTLLFgADPALFLGTLLLVLGLLTMLVgalgALAQ 293
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 252 CDAKRWLAYLSLSHM---LIGMCILLSSSYCGdyyAFVYCLGHGLSVCLSFMIIWFGYEISGSRNwsiLVKIIGGGLIMH 328
Cdd:COG0651 294 RDLKRLLAYSSVSQIgyiLLGLGLGTPLGLAG---ALFHLLNHALAKALLFLAAGAIERATGTRD---LDKLGGLGKRMP 367
|
330 340
....*....|....*....|....*....
gi 12249135 329 VVAGFIF---LNVCGFPPTLQFFGELWLV 354
Cdd:COG0651 368 LTAAAFLigaLALAGLPPLSGFVSKWLLL 396
|
|
| NDH_I_M |
TIGR01972 |
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ... |
52-351 |
2.64e-20 |
|
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]
Pssm-ID: 273903 [Multi-domain] Cd Length: 481 Bit Score: 92.70 E-value: 2.64e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 52 LDNLSCLMLTLT----LIICLVLWLVEVKSVVLYISI-----ASSMVTYVVSNSLVFWFFYELSIISaLYLLIVNSPYPE 122
Cdd:TIGR01972 75 VDGISLLLVLLTalltLLAILASWESIQKRVKEFYALlllleAGVIGVFLALDLFLFYVFWEAMLIP-MYLLIGVWGGPN 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 123 RYVSSWYFGGYIILGSVPLLVG-ICFVGLSNGSFNVIMWGNEGSEISSMYLLIILIFLT---KIPVFPFHGWLPLVHAEA 198
Cdd:TIGR01972 154 RIYAAMKFFLYTLAGSLLMLLAiLGLYFLGGGTFDLLELLNLPLPFGVQTWLFLAFFIAfavKVPLFPLHTWLPDAHVEA 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 199 SSPVSIILSGYIMKLGLVGLVRLCGCVLVDYLYGYSIFLLGYSVVYLI----AAMLECDAKRWLAYLSLSHM---LIGMC 271
Cdd:TIGR01972 234 PTAGSVILAGVLLKMGTYGFLRFNLPLFPDASLYFAPVLAALGVIAIIygalIALAQTDIKRLIAYSSISHMgfvLLGIF 313
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 272 ILLSSSYCGdyyAFVYCLGHGLSVCLSFMIIWFGYEISGSRNWSILVKIIGGGLIMHVVAGFIFLNVCGFPPTLQFFGEL 351
Cdd:TIGR01972 314 SFNELGISG---AVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEF 390
|
|
| PRK05846 |
PRK05846 |
NADH:ubiquinone oxidoreductase subunit M; Reviewed |
52-388 |
3.32e-19 |
|
NADH:ubiquinone oxidoreductase subunit M; Reviewed
Pssm-ID: 235622 [Multi-domain] Cd Length: 497 Bit Score: 89.49 E-value: 3.32e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 52 LDNLSCLMLTLT----LIICLVLWLV---EVKSVVLYISIASSMVTYVVS--NSLVFWFFYELSIIsALYLLIVNSPYPE 122
Cdd:PRK05846 80 VDGISLLLVVLTalltPLAVLASWEEikkRVKFYMAALLWLEGGVIGVFAalDLLLFYVFFEAMLI-PMYFLIGVWGGKN 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 123 RYVSSWYFGGYIILGSVPLLVGICFVGLSN----GSFNVIMWGNEGSEISSMYLLIILIFLT---KIPVFPFHGWLPLVH 195
Cdd:PRK05846 159 RIYAATKFFLYTLLGSLLMLVAIIYLVVVYynatGTFDIADLLNLPLPPGVQYWLFLAFFIAfavKMPMFPLHTWLPDAH 238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 196 AEASSPVSIILSGYIMKLGLVGLVRLCGCVLVDYLYGYSIFLLGYSVVYLI----AAMLECDAKRWLAYLSLSHM---LI 268
Cdd:PRK05846 239 VQAPTAGSVLLAGILLKMGAYGLLRFSLPLFPDASHEFAPIIITLGVIAIIygalVALAQTDIKKLIAYSSISHMgfvTL 318
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 269 GMCILLSSSYCGdyyAFVYCLGHGLSVCLSFMIIWFGYEISGSRNWSILvkiigGGL--IMHVVAGF---IFLNVCGFPP 343
Cdd:PRK05846 319 GIFAGNQLGIQG---AIFQMISHGLSSAALFLLVGVLYDRLHTRDIADY-----GGLakVMPVLAAFflfFAMASLGLPG 390
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 12249135 344 TLQFFGELwlvinyvtisdficLILVSIYIFSGSIIGFIVYGLII 388
Cdd:PRK05846 391 TSGFVGEF--------------LILLGSFQVNPVIAFIATTGLIL 421
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
97-370 |
2.77e-18 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 84.67 E-value: 2.77e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 97 LVFWFFYELSIISALYLLIVNSPYPERYVSSWYFGGYIILGSVPLLVGICFVGLSNGS------FNVIMWGNEGSEISSM 170
Cdd:pfam00361 5 LLMYLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTlsfdelSKALTGGLNSSGLLLL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 171 YLLIILIFLTKIPVFPFHGWLPLVHAEASSPVSIILSGYIMKLGLVGLVRLCGCVLVDYLYGYSIFLLGYSVVYLIA--- 247
Cdd:pfam00361 85 FLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLLGsla 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 248 AMLECDAKRWLAYLSLSHMLIGMCILLSSSYCGDYYAFVYCLGHGLSVCLSFMIIW-FGYEISGSRNWSILVKIIGGGLI 326
Cdd:pfam00361 165 ALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCAGsVIYRRVHTRNIRDYGGLAKTMPI 244
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 12249135 327 MHVVAGFIFLNVCGFPPTLQFFGElWLVINYVTISDFICLILVS 370
Cdd:pfam00361 245 LALVFLVAMLSLAGLPPTAGFLGK-FLILAAAVAASWIFLVLAG 287
|
|
| ND4 |
MTH00014 |
NADH dehydrogenase subunit 4; Validated |
49-312 |
8.92e-18 |
|
NADH dehydrogenase subunit 4; Validated
Pssm-ID: 214399 [Multi-domain] Cd Length: 452 Bit Score: 84.79 E-value: 8.92e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 49 WVILDNLSCLMLTLTLIICLVLWLVEVK-----------SVVLYISIASSMVTYVVSNSLVFWFFYELSIISALYLLIVN 117
Cdd:MTH00014 54 SLSSDMLSAPLITLTLWITALMILASFKifqnnkapktfMTNILILNLILLLTFSASNLLMFYIFFEASLIPTLFLILGW 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 118 SPYPERYVSSWYFGGYIILGSVPLLVGICFVGLSNGSFNVIMWGNEGSEISSM---YLLIILIFLTKIPVFPFHGWLPLV 194
Cdd:MTH00014 134 GYQPERLQASFYLMIYTVTASLPLLMSILLIFYTNNSLSMLMSSMEPPSIYLMnlwWLITILAFMVKMPLYTVHLWLPKA 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 195 HAEASSPVSIILSGYIMKLGLVGLVRLCGcVLVDYLYGYSIFLLGYSVVYLIAAMLEC----DAKRWLAYLSLSHMLIGM 270
Cdd:MTH00014 214 HVEAPVAGSMILAGILLKLGGYGLLRMSS-LFMHINKSLSAPFSSISLVGAVITSLICirqpDLKSLIAYSSVGHMGLMT 292
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 12249135 271 CILLSSSYCGDYYAFVYCLGHGLSVCLSFMIIWFGYEISGSR 312
Cdd:MTH00014 293 AGIMSNTSWGWQGALAMMIAHGLCSSALFALANMTYETTHTR 334
|
|
| ND4 |
MTH00094 |
NADH dehydrogenase subunit 4; Provisional |
36-422 |
1.48e-17 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 177157 [Multi-domain] Cd Length: 403 Bit Score: 83.80 E-value: 1.48e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 36 MMILGVKNYL--CGGWVILDNLSCLMLTLTLIICLVLWLVEVKSVVL----YISIASSMVTYVVSNSLVFWFFYELSIIS 109
Cdd:MTH00094 18 FFSFLMFNNYswSGLFFFFDSFVFVLLIFMMVFILGLVLLSEKNFNLlilsNLLILICLLFFVSSNMLMLYMFFELSMFP 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 110 ALYLLIVNSPYPERYVSSWYFGGYIILGSVPLLvgicFVGLSNGSFNVIMWGNEGSEISSMYLLIiLIFLTKIPVFPFHG 189
Cdd:MTH00094 98 ILIMILGYGSQIEKINSSYYLLFYAAFFSFPFL----FVYLKNFFFFSLCYFDFFLSWEMFFILS-LSFMMKFPVYFLHL 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 190 WLPLVHAEASSPVSIILSGYIMKLGLVGLVRLCGCVLVDYLYGYSIFLLGYSVVYLIAAMLECDAKRWLAYLSLSHMLIG 269
Cdd:MTH00094 173 WLPKAHVEAPTTASMLLAGLLLKLGTAGFLRILGSLNFVYNNFWIIFSLLGMILSSFCCVFQSDSKSLAAYSSVTHMSFL 252
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 270 MCILLSSSYCGDYYAFVYCLGHGLSVCLSFMIIWFGYEISGSRNWSILVKIIGGGLIMHVVAGFIFLNVCGFPPTLQFFG 349
Cdd:MTH00094 253 LLSLVYMSMSGKLSGLMMMLAHGYTSTLMFYLIGEFYHISKSRLIYFMNSFFSSSMFFGLIFSLVFLSNSGVPPSLSFFS 332
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 12249135 350 ELWLVINYVTISDFICLILVSIYIFSGSIIGFivygLIICSPGNMSYEYNGGLDNLLSCIIYLSLLNLFLFIV 422
Cdd:MTH00094 333 EFLIISNSFMKNKFSFFFIFFYFLVSFYYSLF----LIVSSFMGKKFSNFNNFNVGLSLPLVFMMFNMFWLSL 401
|
|
| ND4 |
MTH00205 |
NADH dehydrogenase subunit 4; Provisional |
52-423 |
2.47e-17 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214457 [Multi-domain] Cd Length: 448 Bit Score: 83.49 E-value: 2.47e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 52 LDNLSCLMLTLTLIICLVLWLVEVK-----------SVVLYISIASSMVTYVVSNSLVFWFFYELSIISALYLLIVNSPY 120
Cdd:MTH00205 55 FDSLSLPLIMLSFWISLLMVLASYKvfksnknsklfTVSVIMLLLILILSFSVDNLLLFYITFEASLIPTLILILGWGYQ 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 121 PERYVSSWYFGGYIILGSVPLLVGICFVGLSNGSFNVIMWGNEGSEISSMYLLII---LIFLTKIPVFPFHGWLPLVHAE 197
Cdd:MTH00205 135 PERLQASMYMMMYTLCASLPLLIGLFFLNSLNFSLSMFFNFPLNFSDFYLFLYWIflmLAFLVKLPMYFVHLWLPKAHVE 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 198 ASSPVSIILSGYIMKLGLVGLVRLcGCVLVDYLYGYSIFLLGYS----VVYLIAAMLECDAKRWLAYLSLSHMLIGMCIL 273
Cdd:MTH00205 215 APVSGSMILAGVLLKLGGYGLIRI-TSMLYKLNSNFSELFFSISlwggVMTGMICLRQVDLKSLIAYSSVGHMGLMVVGV 293
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 274 LSSSYCGDYYAFVYCLGHGLSVCLSFMIIWFGYEISGSRNwsilVKIIGGGLIMHVVAGFIFLNVCGF----PPTLQFFG 349
Cdd:MTH00205 294 FSNTSWGMNGAIIMMVAHGLCSSGMFALANVNYERTNSRS----MLMNKGVLNTFPFLVLMWFLLISCnmaaPPSLNLAS 369
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 12249135 350 ELWLVINYVTISdFICLILVSIYIFSGSIIGFIVYGLIicSPGNMSYEYNGGLDNLLSCIIYLSLLNLFLFIVI 423
Cdd:MTH00205 370 EILLIMSLLSSS-KISGIPLSLISFLSGAYSLYLYSQS--QHGKVSSQISSFLAISEREYYILILHWFPLNILI 440
|
|
| PRK06473 |
PRK06473 |
NADH-quinone oxidoreductase subunit M; |
91-317 |
2.62e-15 |
|
NADH-quinone oxidoreductase subunit M;
Pssm-ID: 235810 [Multi-domain] Cd Length: 500 Bit Score: 77.43 E-value: 2.62e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 91 YVVSNSLVFWFFYELSIISaLYLLIVNSPYPERYVSSWYFGGYIILGSVPLLVG----ICFVGLSNGSFNVIMWGNEGSE 166
Cdd:PRK06473 124 FLAQDLLLFFLFYELELIP-LYLLIAIWGGQRRGYAATKFLLYTAISGILILVSflglVWLSGASSFDYEPLRSHTLPLS 202
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 167 ISSMYLLIILI-FLTKIPVFPFHGWLPLVHAEASSPVSIILSGYIMKLGLVGLVRLCGCVLVDYLYGYSIFLLGYSVVYL 245
Cdd:PRK06473 203 TQLLLLAPILVgFGIKIPLVPFHTWLPDAHVEASTPVSVLLAGVLLKLGTYGLLRFGVGLFPEAWVYLAPWLATWAVVSV 282
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 12249135 246 I----AAMLECDAKRWLAYLSLSHMLIGMCILLSSSYCGDYYAFVYCLGHGLSVCLSFMIIWFGYEISGSRNWSIL 317
Cdd:PRK06473 283 LygasCAIAQKDMKKMVAYSSIGHMGYILLAAAAATPLSILAAVFQMISHGLISALLFLLVGVVYKKTGSRDVDVL 358
|
|
| PRK07234 |
PRK07234 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
51-294 |
1.94e-14 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 235978 [Multi-domain] Cd Length: 470 Bit Score: 74.99 E-value: 1.94e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 51 ILDNLSCLML----TLTLIICLVLWlVEVKSVVLY---ISIASSM-VTYVVSNSLVFWFFYELSIISAlYLLIVnspYPE 122
Cdd:PRK07234 64 RADALSGYFIltnaLVTLAVIFYCW-ESAKTRFFYaqlLILHGSVnAAFVCADLISLYVALEVLSIAT-FLLVA---YPR 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 123 RYVSSWYFGGYIILGSVPL---LVGICFVGLSNGSFNVIMWGNEGSEISSmylLIILIFLTKIPVFPFHGWLPLVHAEAS 199
Cdd:PRK07234 139 TDRAIWVGLRYLFYSNVAMlfyLIGAVLVYQANGTFAFSGLATADPEAFA---LIALGLLVKGGIFVSGLWLPLTHSEAE 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 200 SPVSIILSGYIMKLGLVGLVRlCGCVLVDYLYGYSIFLLGYSVVYLIAAMLECDAKRWLAYLSLSHMLIgmcILLSSSYC 279
Cdd:PRK07234 216 PPVSALLSGVVVKAGVFPLVR-CALDVPGLDLIVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQLGF---ILAAPLVG 291
|
250
....*....|....*
gi 12249135 280 GdyyafVYCLGHGLS 294
Cdd:PRK07234 292 G-----LYALAHGLV 301
|
|
| PRK12561 |
PRK12561 |
NAD(P)H-quinone oxidoreductase subunit 4; Provisional |
55-269 |
1.18e-13 |
|
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
Pssm-ID: 237137 [Multi-domain] Cd Length: 504 Bit Score: 72.37 E-value: 1.18e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 55 LSCLMLTLTLiicLVLWLVEVKSVVLY----ISIASSMVTYVVSNSLVFWFFYELSIISaLYLLIVNSPYPERYVSSWYF 130
Cdd:PRK12561 67 LSGLITTLSI---FASWKVTRKPRLFYflmlVLYSAQIGVFLAQDLLLFFLMWELELVP-VYLLISIWGGQKRLYAATKF 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 131 GGYIILGSVPLLVGICFVGLSNGSFNVIMwgnegSEISS----------MYLLIILIFLTKIPVFPFHGWLPLVHAEASS 200
Cdd:PRK12561 143 ILYTALASIFILVAGLALALSGDTFTFDL-----AELGAksyplalellLYAGFLIAFGVKLPIFPLHTWLPDAHGEASA 217
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 12249135 201 PVSIILSGYIMKLGLVGLVRLCGCVLVDYLYGYSIFLLGYSVVYLI----AAMLECDAKRWLAYLSLSHM---LIG 269
Cdd:PRK12561 218 PVSMILAGVLLKMGGYALIRFNVQMLPDAHVYFAPALAILGVVNIIygalNAFAQDNVKRRLAYSSVSHMgfvLLG 293
|
|
| ND4 |
MTH00226 |
NADH dehydrogenase subunit 4; Provisional |
75-394 |
7.30e-13 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214466 [Multi-domain] Cd Length: 505 Bit Score: 69.95 E-value: 7.30e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 75 VKSVVLYISIASSMVTYVVSNSLVFWFF--YELSIISALYLLIVNSPYPERYVSSWYFGGYIILGSVPLLvgICFVGLSN 152
Cdd:MTH00226 130 TKSFLICMLILEFLLYAVFSVLDIFMFYilFEGVLIPMYLILGIWGSREEKMQAAYYFFFYTLIGSVLML--LCLFSLYN 207
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 153 --GSFNVIMWGNEGSEISS-----MYLLIILIFLTKIPVFPFHGWLPLVHAEASSPVSIILSGYIMKLGLVGLVRLCGCV 225
Cdd:MTH00226 208 ihGTTDYLTLASCSHVVSEqtqkwIFLGIFLAMAVKIPIFPFHIWLPKAHVEAPVAGSVLLAGILLKLGGYGLVRLSWPI 287
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 226 LVDYLYGYSIFLLGYSVVYLI----AAMLECDAKRWLAYLSLSHMLIGMCILLSSSYCGDYYAFVYCLGHGLSVCLSFMI 301
Cdd:MTH00226 288 LPLGAQNLAPAVIAMGIVGIVygsfATCRQIDVKRLVAYSSVAHMGLVSITLVTHDIIGLTGSIFIMLAHGIVSSLLFIL 367
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 302 IWFGYE------ISGSRNWSILVKIIGGGLIMHVVAGFiflnvcGFPPTLQFFGELWLVINYVTISDFICLILVSIYIFS 375
Cdd:MTH00226 368 VTILYDrhhtrlIKYYRGLSITMPIWGTIMIVTSLANV------AVPPSGNFIGEYLSILSSFNWNPIIGVFVCSGVILS 441
|
330
....*....|....*....
gi 12249135 376 GSIIGFIVYGLIICSPGNM 394
Cdd:MTH00226 442 AVYSFYFANRVTFGAPGNL 460
|
|
| ND4 |
MTH00204 |
NADH dehydrogenase subunit 4; Provisional |
52-375 |
9.48e-13 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 164750 [Multi-domain] Cd Length: 485 Bit Score: 69.71 E-value: 9.48e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 52 LDNLSCLMLTLTLIICLVLWLVEVKSV---------VLYISIASSMVTYVVSNSLVFWFFYELSIISALYLLIVNSPYPE 122
Cdd:MTH00204 81 VDGVSLFFILLTTLLIPICILISWKSIkflfkefllCLLFLEVLLIGVFSVLDLLLFYILFEGILIPMFLLIGIWGSREE 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 123 RYVSSWYFGGYIILGSVPLLVGICFVGLSNGSFNVIMWGNEGSEISSMYLLIILIFLT---KIPVFPFHGWLPLVHAEAS 199
Cdd:MTH00204 161 KVRASYYFFFYTFAGSVFMLLGIFQLYSITGTTDYQILLNIKLPLSIQKWLLVGFFLSlavKIPQIPFHIWLPQAHVEAP 240
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 200 SPVSIILSGYIMKLGLVGLVRLCGCVL---VDYLYGYSIFLLGYSVVYliAAMLEC---DAKRWLAYLSLSHMLIGMCIL 273
Cdd:MTH00204 241 VAGSVILAGILLKLGGYGFLRFSWPLFpaaSEYFAPLIVMLSVIAVIY--GSLTTCrqvDFKRLIAYSSVAHMGLVPLGL 318
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 274 LSSSYCGDYYAFVYCLGHGLSVCLSFMIIWFGYEisgsRNWSILVKIIGGGLIMHVVAGFIF----LNVCGFPPTLQFFG 349
Cdd:MTH00204 319 FTHTIEGLVAAVFLMLAHGFVSSALFIAVTFLYE----RHHTRLIKYYRGLTLTMPLFVIIMlvlsLANMGFPLSCNFVG 394
|
330 340
....*....|....*....|....*.
gi 12249135 350 ELWLVINYVTISDFICLILVSIYIFS 375
Cdd:MTH00204 395 EFFSLLAAFEYSLGLGVLVTSGMVWS 420
|
|
| ND4 |
MTH00044 |
NADH dehydrogenase subunit 4; Validated |
89-388 |
9.52e-13 |
|
NADH dehydrogenase subunit 4; Validated
Pssm-ID: 214411 [Multi-domain] Cd Length: 458 Bit Score: 69.62 E-value: 9.52e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 89 VTYVVSNSLVFWFFYELSIISALYLLIVNSPYPERYVSSWYFGGYIILGSVPLLVGICFVGLSNGS-----FNVIMWGNE 163
Cdd:MTH00044 109 ITFSSLELILFYIAFETTLIPTLILITRWGAQKERIQAGLYFLFYTLFGSLPLLISLIAIYSSSSSlsiplSELNWLTSL 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 164 GSEISSMYLLI-ILIFLTKIPVFPFHGWLPLVHAEASSPVSIILSGYIMKLGLVGLVRLCGCVLVDYLYGYSIFLLGY-- 240
Cdd:MTH00044 189 SSNSSSIWWIFcILAFLVKMPIYGFHLWLPKAHVEAPVAGSMILAAILLKLGGYGLIRLINLFSLPSANNISFILIVFcc 268
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 241 --SVVYLIAAMLECDAKRWLAYLSLSHMLIGMCILLSSSYCGDYYAFVYCLGHGLSVCLSFMIIWFGYEISGSRNWSIlv 318
Cdd:MTH00044 269 wgALITSIICLRQTDLKALIAYSSVGHMSLVAAGIFSGTNWGINGALILMIAHGLVSSALFCLANILYERSGTRTLSI-- 346
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 12249135 319 kIIGGGLIMHVVAGFIFLNVC---GFPPTLQFFGELWLvinyvtISDFICLILVSIYIFSGSIIGFIVYGLII 388
Cdd:MTH00044 347 -TRGFKLITPLLPLWWLIFCAanlGLPPLPNLIGELLI------ISSIISWSILSFPIIGLATVFGAIYSLLI 412
|
|
| ND4 |
MTH00217 |
NADH dehydrogenase subunit 4; Provisional |
99-350 |
1.84e-12 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214462 [Multi-domain] Cd Length: 482 Bit Score: 68.93 E-value: 1.84e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 99 FWFFYELSIISALYLLIVNSPYPERYVSSWYFGGYIILGSVPLLVGICFVGLSNGSFNVIMWGNEGSEISSMYLLIILIF 178
Cdd:MTH00217 134 FYILFEGILIPMFLIIGIWGSREEKVQASYYFFFYTFIGSVFMLLGIFTLYSYAGTTDYQALCCLKIEKELQYFIFLGFF 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 179 LT---KIPVFPFHGWLPLVHAEASSPVSIILSGYIMKLGLVGLVRLCGCVLVDYLYGYSIFLLGYSVVYLIAAML----E 251
Cdd:MTH00217 214 LSlaiKIPKIPFHIWLPQAHVEAPVAGSVILAGVLLKLGGYGFIRFSWPLLPEASEYFSPLIQTLSLLAIIYGSLttcrQ 293
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 252 CDAKRWLAYLSLSHMLIGMCILLSSSYCGDYYAFVYCLGHGLSVCLSFMIIWFGYEisgsRNWSILVKIIGGGLIMHVVA 331
Cdd:MTH00217 294 VDLKRIIAYSSVAHMGLVTLGIFSHTIQGLVAAIFLMLAHGLVSSALFIAVTFLYE----RHHTRLIKYYRGMVITMPLF 369
|
250 260
....*....|....*....|...
gi 12249135 332 GFIFLNV----CGFPPTLQFFGE 350
Cdd:MTH00217 370 GILMLLLvlanASIPLSCNFVGE 392
|
|
| PRK08667 |
PRK08667 |
hydrogenase membrane subunit; Validated |
87-268 |
1.95e-12 |
|
hydrogenase membrane subunit; Validated
Pssm-ID: 236331 [Multi-domain] Cd Length: 644 Bit Score: 68.99 E-value: 1.95e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 87 SMVTYVVS-NSLVFWFFYELSIISALYLLIVNSPYPERYVSSWYFGGYIILGSVPLLVGICFVGLSNGSFNVIMWGNEGS 165
Cdd:PRK08667 123 SMLGVVASaNTFSFLFFWEIMALSSFFLVMNDYQEEETQRAGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELSPLGASAG 202
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 166 EISSMYLLIILIFLTKIPVFPFHGWLPLVHAEASSPVSIILSGYIMKLGLVGLVRLCGCVLV-DYLYGYSIFLLGY--SV 242
Cdd:PRK08667 203 ILSLVFLLLFLGFGIKAGIIPFHKWLPYAHPASPSNVSALMSGVMLKVAVYGLVRFLMDVLSpELWWGVLILLAGSisAL 282
|
170 180
....*....|....*....|....*.
gi 12249135 243 VYLIAAMLECDAKRWLAYLSLSHMLI 268
Cdd:PRK08667 283 LGVIYALKEHDLKGLLAYSSIENIGI 308
|
|
| PRK08375 |
PRK08375 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
40-355 |
2.01e-11 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236251 [Multi-domain] Cd Length: 487 Bit Score: 65.67 E-value: 2.01e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 40 GVKNYLCGGW-------VILDNLSCLMLTLTLIICL-VLW----LVEVKSVVLY----ISIASSMVTYVVSNSLVFWFFY 103
Cdd:PRK08375 56 GVIAYVVGGWppgigieLRADSLSALFLLVTSILAIaALLyaigYGEHRQTRFYalflLLLAGLLGALLTADLFNLFVFL 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 104 ELSIISAlYLLIVNSPYPERYVSSWYFGGYIILGSVPLLVGICFVGLSNGSFNVI----MWGNEGSEISSMYLLIILIFL 179
Cdd:PRK08375 136 EIMSLSS-YALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMAdlagALAENPTVVTAFGFVLLALAL 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 180 tKIPVFPFHGWLPLVHAEASSPVSIILSGYIMKLGLVGLVRL-----CGCVLVDYLYGYSIFLLGYS--VVYLIAAMLEC 252
Cdd:PRK08375 215 -KAAVFPLHTWLPRAYPAAPPVVTALLSGLVTKVAVYALIRIyftvfGGDFRFALGLGWLLAVLALLsmLVGSLAALGQD 293
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 253 DAKRWLAYLS---LSHMLIGMCILLSSSYCGdyyAFVYCLGHGLSVCLSFMIIWFGYEISGSRNwsiLVKIIGGGLIMHV 329
Cdd:PRK08375 294 DVKRVLAYSTvsqMGYILLGLALLTPLALAA---GLLHLLHHALMKGALFLAAGAIEVTYGTRR---LSELSGLGRRMPL 367
|
330 340
....*....|....*....|....*....
gi 12249135 330 VAGFIF---LNVCGFPPTLQFFGELWLVI 355
Cdd:PRK08375 368 TAAAFAvasLSLIGVPPTSGFVSKWYLVV 396
|
|
| PRK02546 |
PRK02546 |
NAD(P)H-quinone oxidoreductase subunit 4; Provisional |
53-270 |
2.78e-11 |
|
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
Pssm-ID: 235050 [Multi-domain] Cd Length: 525 Bit Score: 65.11 E-value: 2.78e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 53 DNLSCLMLTLTLII----CLVLWLVEVKSVVLYISI----ASSMVTYVVSNSLVFWFFYELSIISALYLLIVNSPYPERY 124
Cdd:PRK02546 86 DGLSMPLILLTGFIttlaVLAAWPVTFKPKLFYFLMlamyGGQIAVFAVQDMLLFFLAWELELIPVYLLLAIWGGKKRQY 165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 125 VSSwYFGGYIILGSVPLLVGICFVGLSNGSFNVIMWGNEGSEISS-----MYLLIILIFLTKIPVFPFHGWLPLVHAEAS 199
Cdd:PRK02546 166 AAT-KFILYTAGSSLFILLAALAMAFYGDTPTFDMTALAAKDFGLgfqllCYAGLLIAYGVKLPIVPLHTWLPDAHGEAT 244
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 12249135 200 SPVSIILSGYIMKLGLVGLVRLCGCVLVDYLYGYSIFLLGYSVVYLIAAMLECDA----KRWLAYLSLSHM---LIGM 270
Cdd:PRK02546 245 APVHMLLAGILLKMGGYALLRMNAGMLPDAHAQFAPLLIVLGVVNIIYAALTSFAqrnlKRKIAYSSISHMgfvLIGI 322
|
|
| PRK12667 |
PRK12667 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
172-382 |
1.27e-10 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 237167 [Multi-domain] Cd Length: 520 Bit Score: 63.07 E-value: 1.27e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 172 LLIILIFLTKIPVFPFHGWLPLVHAEASSPVSIILSGYIMKLGLVGLVRL------CGCVLVDYLYGYS--IFLLGY--S 241
Cdd:PRK12667 227 ALALWAFTIKAAIFPNHFWLPDAHPAAPSPVSAMLSGLVVNVGAYAIIRFlytifgISPSLIDFRAALSpiLIILGAvsA 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 242 VVYLIAAMLECDAKRWLAYLSLSHM-LIGMCILLSSSYcGDYYAFVYCLGHGLSVCLSFMIIWFGYEISGSRNWSILVKI 320
Cdd:PRK12667 307 IIGALMMVVQKDVKRLLAYSTISHMgYIFMGIGIGTQL-GLAAALFHIINHAIAKSLLFLASGVFIHAAGTRDIDELAGL 385
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 12249135 321 IGGGLIMHVVAGFIFLNVCGFPPTLQFFGELwLVINYVTISDFICLILVSIYIFSGSIIGFI 382
Cdd:PRK12667 386 GRKMPIASFAFLIGALSLVGIPPLNGFFSKL-LLFNALLESGFYLPALVLLIASAISLVGYF 446
|
|
| PRK07363 |
PRK07363 |
NADH-quinone oxidoreductase subunit M; |
91-266 |
1.58e-09 |
|
NADH-quinone oxidoreductase subunit M;
Pssm-ID: 180945 [Multi-domain] Cd Length: 501 Bit Score: 59.73 E-value: 1.58e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 91 YVVSNSLVFWFFYELSIISaLYLLIVNSPYPERYVSSWYFGGYIILGSVPLLVGICFVGLSNGS----FNVIMWGNEGSE 166
Cdd:PRK07363 124 LLAQNLLLFFLFYELELIP-FYLLIAIWGGEKRGYASIKFLIYTAVSGLLVLAAFLGIVWLSGStsfdYDAISTQNLSLN 202
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 167 ISSMYLLIILI-FLTKIPVFPFHGWLPLVHAEASSPVSIILSGYIMKLGLVGLVRLCgcvLVDYLYGYSIFLLGY----- 240
Cdd:PRK07363 203 TQLILLTGLLLgFGIKIPLVPLHTWLPDAYTEASPAVAILLGGVLAKLGTYGLLRFG---LQLFPQTWSLVAPGLaiigt 279
|
170 180
....*....|....*....|....*...
gi 12249135 241 -SVVY-LIAAMLECDAKRWLAYLSLSHM 266
Cdd:PRK07363 280 iSVIYgALSAIAQKDIKRMVAYSSIGHM 307
|
|
| ND4 |
MTH00127 |
NADH dehydrogenase subunit 4; Provisional |
97-312 |
4.09e-09 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 177186 [Multi-domain] Cd Length: 459 Bit Score: 58.43 E-value: 4.09e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 97 LVFWFFYELSIISALYLLIVNSPYPERYVSSWYFGGYIILGSVPLLVGICFVGLSNGSFNVIMWGNEGSEISSMYLLII- 175
Cdd:MTH00127 117 IMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTGTLSMLTLQYSQPLQLSSWADKLw 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 176 -----LIFLTKIPVFPFHGWLPLVHAEASSPVSIILSGYIMKLGLVGLVRLcgCVLVDYL-----YGYSIFLLGYSVVYL 245
Cdd:MTH00127 197 wagclLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRM--MVMLDPLtkelsYPFIILALWGIIMTG 274
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 12249135 246 IAAMLECDAKRWLAYLSLSHMLIGMCILLSSSYCGDYYAFVYCLGHGLSVCLSFMIIWFGYEISGSR 312
Cdd:MTH00127 275 SICLRQTDLKSLIAYSSVSHMGLVAGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSR 341
|
|
| ND4 |
MTH00068 |
NADH dehydrogenase subunit 4; Provisional |
85-388 |
3.32e-08 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214417 [Multi-domain] Cd Length: 458 Bit Score: 55.31 E-value: 3.32e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 85 ASSMVTYVVSNSLVFWFFYELSIISALYLLIVNSPYPERYVSSWYFGGYIILGSVPLLVGICFVGLSNGSFNVIMWGNEG 164
Cdd:MTH00068 104 LTLILAFSATELILFYIFFEATLIPTLIIITRWGNQEERLNAGTYFLFYTLAGSLPLLIALLILQNSLGSLSLILLELMS 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 165 SEISSMY------LLIILIFLTKIPVFPFHGWLPLVHAEASSPVSIILSGYIMKLGLVGLVRLcGCVLVDYLYGYSIFLL 238
Cdd:MTH00068 184 PMQLMTYtnkiwwLACLLAFMVKMPLYGLHLWLPKAHVEAPIAGSMILAAVLLKLGGYGILRI-SILLTPLSKELSYPFI 262
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 239 GYSVVYLIAAMLEC----DAKRWLAYLSLSHM-LIGMCILLSS--SYCGdyyAFVYCLGHGLSVCLSFMIIWFGYEISGS 311
Cdd:MTH00068 263 ILALWGVLMTSLIClrqtDLKSLIAYSSVSHMgLVIAAALIQTpwSFSG---AIILMISHGLTSSALFCLANTNYERTHS 339
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 312 RNwsiLVKIIGGGLIMHVVAG---FIFLNVCGFPPTLQFFGELwlvinyvtisdficLILVSIYIFSGSIIGFIVYGLII 388
Cdd:MTH00068 340 RT---LLLLRGAQTILPLMATwwlLSNLSNMALPPSPNLWGEL--------------TIMVSLFNWSNWTILITGLGTLI 402
|
|
| ndhD |
CHL00011 |
NADH dehydrogenase subunit 4 |
97-271 |
1.28e-07 |
|
NADH dehydrogenase subunit 4
Pssm-ID: 176954 [Multi-domain] Cd Length: 498 Bit Score: 53.41 E-value: 1.28e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 97 LVFWFFYELSIISAlYLLIVNSPYPERYVSSWYFGGYIILGSVPLLVGICFVGL--SNG-SFNVIMWGNEGSEIS---SM 170
Cdd:CHL00011 135 LLFFIMWELELIPV-YLLLSMWGGKKRLYSATKFILYTAGGSIFLLIGVLGMGLygSNEpTLNFETLANQSYPVAleiLF 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 171 YLLIILIFLTKIPVFPFHGWLPLVHAEASSPVSIILSGYIMKLGLVGLVRLCGCVLVDYLYGYSIFLLGYSVVYLIAAML 250
Cdd:CHL00011 214 YIGFLIAYAVKLPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIFSPWLVIVGAIQIIYAAS 293
|
170 180
....*....|....*....|....*...
gi 12249135 251 ECDA----KRWLAYLSLSHM---LIGMC 271
Cdd:CHL00011 294 TSLGqrnlKKRIAYSSVSHMgfiIIGIG 321
|
|
| PRK06521 |
PRK06521 |
hydrogenase 4 subunit B; Validated |
168-260 |
1.59e-07 |
|
hydrogenase 4 subunit B; Validated
Pssm-ID: 235820 [Multi-domain] Cd Length: 667 Bit Score: 53.35 E-value: 1.59e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 168 SSMYLLIILIFLTKIPVFPFHGWLPLVHAEASSPVSIILSGYIMKLGLVGLVRlcgcVLVDYL----YGYSIFLLG---- 239
Cdd:PRK06521 210 SLVFLLALFGFGAKAGLVPLHVWLPRAHPAAPSHVSALMSGVMLKVAIYGILR----VVFDLLgapgWWWGVLVLAlgai 285
|
90 100
....*....|....*....|....
gi 12249135 240 ---YSVVYliaAMLECDAKRWLAY 260
Cdd:PRK06521 286 savLGVLY---ALAEHDLKRLLAY 306
|
|
| PRK08676 |
PRK08676 |
hydrogenase membrane subunit; Validated |
95-377 |
4.41e-07 |
|
hydrogenase membrane subunit; Validated
Pssm-ID: 181537 [Multi-domain] Cd Length: 485 Bit Score: 52.06 E-value: 4.41e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 95 NSLVFWFFYELS-IISALYLLIVNSPypERYVSSWyfgGYIILGSVPLL---VGICFV------GLSNGSFNVIMWGNEG 164
Cdd:PRK08676 123 NLALFWIFAELTtVFSAMLIAILSAR--ENIDAAL---KYIFIASTAMIfafIGLIFLfsltrqALGTGTLNWTELAAHA 197
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 165 SEISS-----MYLLIILIFLTKIPVFPFHGWLPLVHAEASSPVSIILSGYIMKLGLVGLVRLCGCVLVDYLYG-YSIFLL 238
Cdd:PRK08676 198 SLLSPsvlgaSFLFIFIGFLAKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLSALLRQSGAAEqFSNVLI 277
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 239 GYSVVYLIAAML----ECDAKRWLAYLSLSHMLIGMCILLSSSYCGDYYAFVYCLGHGL---SVCLSFMIIWFGYEISGS 311
Cdd:PRK08676 278 GLGIFSIAVAAFsmlsQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLvksGLFFSAGILHRQYRSDRF 357
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 12249135 312 RNWSILVKI---IGGGLIMHVVAgfiflnVCGFPPTLQFFGELWLVINYVTISDFICLILVSIYIFSGS 377
Cdd:PRK08676 358 DRIFDVFRLqpvAAWGVILGSAA------IIGMPPFPLFLSKFFILLQLGGISVWLVLAVLLLLLLAAS 420
|
|
| ND4 |
MTH00110 |
NADH dehydrogenase subunit 4; Provisional |
121-312 |
1.10e-06 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 177172 [Multi-domain] Cd Length: 459 Bit Score: 50.66 E-value: 1.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 121 PERYVSSWYFGGYIILGSVPLLVGICFVGLSNGSFNVIM-----------WGNegseiSSMYLLIILIFLTKIPVFPFHG 189
Cdd:MTH00110 140 TERLNAGLYFLFYTLVGSLPLLVALLYIQNNLGSLNFLLlqlwaqplpnsWSN-----NLLWLACMMAFMVKMPLYGLHL 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 190 WLPLVHAEASSPVSIILSGYIMKLGLVGLVRLCGCV--LVDYLYgYSIFLLgySVVYLIAAMLEC----DAKRWLAYLSL 263
Cdd:MTH00110 215 WLPKAHVEAPIAGSMVLAAILLKLGGYGMMRITIILnpLTEFMA-YPFLML--SLWGMIMTSSIClrqtDLKSLIAYSSV 291
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 12249135 264 SHM-LIGMCILLSS--SYCGdyyAFVYCLGHGLSVCLSFMIIWFGYEISGSR 312
Cdd:MTH00110 292 SHMaLVIVAILIQTpwSFMG---ATALMIAHGLTSSMLFCLANSNYERIHSR 340
|
|
| PRK06458 |
PRK06458 |
hydrogenase 4 subunit F; Validated |
174-266 |
1.77e-06 |
|
hydrogenase 4 subunit F; Validated
Pssm-ID: 235805 [Multi-domain] Cd Length: 490 Bit Score: 49.93 E-value: 1.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 174 IILI-FLTKIPVFPFHGWLPLVHAEASSPVSIILSGYIMKLGLVGLVRLcgCVLVDYLYGY---SIFLLGYSVVYLIAAM 249
Cdd:PRK06458 219 FLLIgFGTKVGLFPMHAWLPDAHSEAPSPVSALLSGVLLNVALYAVLRY--YILIDAAIGSdfpGRLLLIFGLLSVLVAA 296
|
90 100
....*....|....*....|.
gi 12249135 250 L----ECDAKRWLAYLSLSHM 266
Cdd:PRK06458 297 FfllrQRDIKRLFAYSSIEHM 317
|
|
| ND4 |
MTH00124 |
NADH dehydrogenase subunit 4; Provisional |
121-221 |
2.45e-05 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214427 [Multi-domain] Cd Length: 457 Bit Score: 46.34 E-value: 2.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 121 PERYVSSWYFGGYIILGSVPLLVGICFVGLSNGSFNVIM-----------WGNEgseISSMYLLiiLIFLTKIPVFPFHG 189
Cdd:MTH00124 140 PERLSAGTYFLFYTLISSLPLLIAILYLHNQTGTLSLPMlqlthptltnsWTNL---LLWLACL--MAFMVKMPLYGLHL 214
|
90 100 110
....*....|....*....|....*....|..
gi 12249135 190 WLPLVHAEASSPVSIILSGYIMKLGLVGLVRL 221
Cdd:MTH00124 215 WLPKAHVEAPIAGSMVLAAILLKLGGYGIIRI 246
|
|
| PRK08668 |
PRK08668 |
NADH dehydrogenase subunit M; Validated |
14-302 |
3.65e-05 |
|
NADH dehydrogenase subunit M; Validated
Pssm-ID: 236332 [Multi-domain] Cd Length: 610 Bit Score: 46.14 E-value: 3.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 14 GFIVTFIYLLIFYVWIWysncSMMILGVKNYlcggWVILDNLSclmltLTLIICLVLWLVEVKSVVLYISIASSMVTYVV 93
Cdd:PRK08668 28 GVIGNALPLLFLIKLYF----TLKVGTGEKL----TLFFGGFK-----LTFTLTHLSWFFAMISLLVIFSVAFFMVSEKT 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 94 SNSLVFWFFYELSIISAL----------------------YLLIVNSPYPERYVSSWYFGGYIIlGSVPLLVGICFVGLS 151
Cdd:PRK08668 95 KNDAYFNMFALMSLAGVLgvflandlltlyifweimtfssFMMVPMGKKESRKASLKYFVLSAI-GAYAMLYAIFLIYAK 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 152 NGSFNVIMWGNEGSEISS-----MYLLIILIF-LTKIPVFPFHGWLPLVHAEASSPVSIILSGYIMKLGLVGL-----VR 220
Cdd:PRK08668 174 TGTFDFADISQGLINDTStgfalIVFLFLLAFgVAKAGIFPLHVWAPDAYSEAPQSFSAVLSGQLSKLGAYGFllvlyVL 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 221 LCGCVLVDYLYGYSIFLLGYSVVYL---------IAAMLECDAKRWLAYLSLS---HMLIGMCILLSSSYCGdyyAFVYC 288
Cdd:PRK08668 254 PGTKLFSEFGTYRGVPLFNYILAWLgnisiivgtLMAILQEDIKKLIAYSSVAnggYILVGLGLGTSLGFAG---GLFHV 330
|
330
....*....|....
gi 12249135 289 LGHGLSVCLSFMII 302
Cdd:PRK08668 331 FNHALFKGLFFLIF 344
|
|
| PRK08042 |
PRK08042 |
formate hydrogenlyase subunit 3; Reviewed |
184-273 |
6.40e-05 |
|
formate hydrogenlyase subunit 3; Reviewed
Pssm-ID: 181206 [Multi-domain] Cd Length: 593 Bit Score: 45.20 E-value: 6.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 184 VFPFHGWLPLVHAEASSPVSIILSGYIMKLGLVGL--VRLCGCVLVDYlYGYSIFLLGYSVVYL--IAAMLECDAKRWLA 259
Cdd:PRK08042 196 IIPLHGWVPQAHANASAPAAALFSTVVMKIGLLGIltLSLLGGNAPLW-WGVALLVLGMITAFVggLYALMEHNIQRLLA 274
|
90
....*....|....
gi 12249135 260 YLSLSHmlIGMCIL 273
Cdd:PRK08042 275 YHTLEN--IGIILL 286
|
|
| 2a6301s01 |
TIGR00940 |
Tmonovalent cation:proton antiporter; This family of proteins constists of bacterial ... |
79-273 |
1.13e-04 |
|
Tmonovalent cation:proton antiporter; This family of proteins constists of bacterial multicomponent K+:H+ and Na+:H+ antiporters. The best characterized systems are the PhaABCDEFG system of Rhizobium meliloti which functions in pH adaptation and as a K+ efflux system and the MnhABCDEFG system of Staphylococcus aureus which functions as a Na+:H+ antiporter. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273353 [Multi-domain] Cd Length: 793 Bit Score: 44.45 E-value: 1.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 79 VLYISIASSMVTYVVS-NSLVFWFFYELSIISAlYLLIvnSPYPERYVSSWYFGGYIIL---GSVPLLVGICFVGLSNGS 154
Cdd:TIGR00940 110 AYLLAFMGAMLGVVLSdNLILLYVFWELTSIVS-FLLI--SYWHHRAHSRYGAQKSLTItvfGGLAMLGGLILLGKITGS 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 155 FNVIMWGNEGSEI--SSMY----LLIILIFLTKIPVFPFHGWLPlvHA-EASSPVSIIL-SGYIMKLGLVGLVRLCGCVL 226
Cdd:TIGR00940 187 FSIDAVIASADAIrnSPLFgtamVLVLLGAFTKSAQFPFHIWLP--DAmEAPTPVSAYLhSATMVKAGLYLLARFTPVFA 264
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 12249135 227 VDYLYGYSIFLLGYSVVYL--IAAMLECDAKRWLAYLSLSHMLIGMCIL 273
Cdd:TIGR00940 265 GTEAWFWIVGLAGLITLLWgsYFAIFQQDLKGILAFSTISQLGLIMVLL 313
|
|
| PRK12647 |
PRK12647 |
putative monovalent cation/H+ antiporter subunit A; Reviewed |
87-270 |
1.29e-04 |
|
putative monovalent cation/H+ antiporter subunit A; Reviewed
Pssm-ID: 237156 [Multi-domain] Cd Length: 761 Bit Score: 44.14 E-value: 1.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 87 SMVTYVVSNSLVFWF-FYELSIISAlYLLI-VNSPYPERYVSSWYFGGYIILGSVPLLVGICFVGLSNGSFNVIMWGNEG 164
Cdd:PRK12647 107 SMLGLVLSDNLITLFvFWELTSITS-FLLIgFNHEREAARRAALQALLVTGGGGLALLAGLILLGNVTGTYSLSELLASG 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 165 SEI--SSMYLLIILIFL----TKIPVFPFHGWLPLVhAEASSPVSIIL-SGYIMKLGLVGLVRLCGCVLVDYLYGYSIFL 237
Cdd:PRK12647 186 DVIreHPLYLAILLLVLggafTKSAQFPFHFWLPNA-MEAPTPVSAYLhSATMVKAGIYLLARLNPVLGGTPLWQTILPL 264
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 12249135 238 LGYSVVYLIA--AMLECDAKRWLAYLSLSH-----MLIGM 270
Cdd:PRK12647 265 FGGLTMLTGAllAVRQTDLKLILAYSTVSAlgtlvMLLGL 304
|
|
| PRK12646 |
PRK12646 |
DUF4040 family protein; |
87-386 |
9.82e-04 |
|
DUF4040 family protein;
Pssm-ID: 183646 [Multi-domain] Cd Length: 800 Bit Score: 41.66 E-value: 9.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 87 SMVTYVVS-NSLVFWFFYELSIISALYLlivnspyperyVSSWYFGG-----------YIILGSVPLLVGICFVGLSNGS 154
Cdd:PRK12646 122 SMIGIVLSdNTILMYVFWELTSVSSFLL-----------ISYWYNNGdsqfgaiqsfmITVFGGLALLVGFIMLYIMTGT 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 155 FNVIMWGNEGSEISSMYLLIILIFL------TKIPVFPFHGWLPLVHAeASSPVSIIL-SGYIMKLGLVGLVRLCGCVLV 227
Cdd:PRK12646 191 NNITEILGQADHIKNHGLFIPMIFMfllgafTKSAQFPFHIWLPRAMA-APTPVSAYLhSATMVKAGIFLLFRFTPLLGL 269
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 228 DYLYGYSIFLLGYSVVYL--IAAMLECDAKRWLAYLSLSHM--------LIGMCILLSSSYCGDYYAFV------YCLGH 291
Cdd:PRK12646 270 SNMYIYIVTFVGLITMLFgsITALKQWDLKGILAYSTISQLgmimamvgIGGGYAQHQQDAIASIYVFVlfaalfHLMNH 349
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 292 GLSVCLSFMIIWFGYEISGSRNWSILVKIIGGGLIMHVV--------AGFIFLNvcGFPPTLQFFGELWLVINyVTISDF 363
Cdd:PRK12646 350 AIFKCALFMGVGIIDHEAGTRDIRILSGMRQLFPKMNLVmtiaalsmAGVPFLN--GFLSKEMFLDALTQTGQ-LSQFSL 426
|
330 340
....*....|....*....|...
gi 12249135 364 ICLILVSIYIFSGSIIGFiVYGL 386
Cdd:PRK12646 427 ISMIIIVFIGVIASIFTF-TYAL 448
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
133-354 |
2.74e-03 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 39.93 E-value: 2.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 133 YIILGSVP---LLVGICFVGLSNGSFNV----IMWGNEGSEISSMYLLIILI---FLTKIPVFPFHGWLPLVHAEASSPV 202
Cdd:TIGR01770 158 YFILGAFSsglLLFGISLIYGFTGSLNFedllLFLSNGMLNISLLLLGIVLIlvgLLFKLSAVPFHMWVPDVYEGAPTPV 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 203 SIILSGYIMKLGLVGLVRLCGCVLVDYLYGYSIFLLGYSVVYLI----AAMLECDAKRWLAYLSLSHMLIGMCILLSSSY 278
Cdd:TIGR01770 238 TAFFSIVPKIAIFAVFLRLFLYILFGFSEAWQIFLAIIAFLSMLignfGALAQKKVKRLLAYSSISHVGYILIGLLAGTL 317
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 12249135 279 CGDYYAFVYCLGHGLSVCLSFMIIW--FGYEISGSRNWSILVKIIGGGLIMHVVAGFIFLNVCGFPPTLQFFGELWLV 354
Cdd:TIGR01770 318 EGIKAVLFYIFIYALMSLGAFGVLSllRSYKDEWIEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVF 395
|
|
| PRK12668 |
PRK12668 |
Na(+)/H(+) antiporter subunit D; |
97-260 |
3.63e-03 |
|
Na(+)/H(+) antiporter subunit D;
Pssm-ID: 237168 [Multi-domain] Cd Length: 581 Bit Score: 39.49 E-value: 3.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 97 LVFWFFYELSIISALyLLIVNSPYPERYVSSWYFGGYIILGSVPLLVGICFVGLSNGSFNVimwGNEGSEISSMYLLIIL 176
Cdd:PRK12668 116 LTLFVFWELMAFTST-FLVWARGTKAAVRAGFRYLLVHVLGGVLLLAGILLHYAETGSFAF---GAIAGLGGTAAWLILI 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 177 IFLTKIPVFPFHGWLPLVHAEASSPVSIILSGYIMKLGLVGLVRL-CGCVLVDYLYGysiFLLGYSVVYliaAMLECDAK 255
Cdd:PRK12668 192 GFGVNAAFPPLHAWLPDAYPEATVTGSVFLSAFTTKTAVYALARAfPGTELLIYIGA---AMAVYGVFF---ALLENDLR 265
|
....*
gi 12249135 256 RWLAY 260
Cdd:PRK12668 266 RLLSY 270
|
|
| PRK06589 |
PRK06589 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
82-423 |
8.41e-03 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 235835 [Multi-domain] Cd Length: 489 Bit Score: 38.26 E-value: 8.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 82 ISIASSMVTYVVSNSLVFWFFYELSIISALYLLIVNSPYPERYVSSWYFGGYIILGSVPLLVGICFVGLSNGSFNVIMWG 161
Cdd:PRK06589 124 LTILIGVLIALSSDLFTMFVCYELLTISTAFLIGHTRNNISLSGGYKYLKILMISALLLFLPAVILIYTKTGNLDFVSGG 203
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 162 NEGSEISSMYLLIILIFLTKIPVFPFHGWLPLVHAeASSPVSIILSGYI-MKLGLVGLVRLCGCVL-VDYL------YGY 233
Cdd:PRK06589 204 LFSKNQSIILLLMFIYGIAKTAIFPVHSWLPAAMV-AHYPVSALLHAVIvVKTGLFCIYKILLYIFgLSYLqrifaeFNW 282
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 234 SIFLLGYSVVYL-IAAMLECDAKRWLAYLSLSHMLIGMCILLSSSYCGDYYAFVYCLGHGLSVCLSFMIIWFGYEISGSR 312
Cdd:PRK06589 283 LIFIPIVSIFYSsLKALKTDNIKKILAYSTISQLSLALLSAFILTPKALGAAILHLVSHSFAKICLFYSMGSIYSLKKED 362
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 313 NWSILVKIIGGGLIMHVVAGFIFLNVCGFPPTLQFFGELWLVINYVTISDFICLILVSIYIFSGSIIGFIVYGLIICSPG 392
Cdd:PRK06589 363 QVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQPWLSIIVMLVVIASSILSALYLLKILSSIY 442
|
330 340 350
....*....|....*....|....*....|....*..
gi 12249135 393 NMSYEYNGGLDN------LLSCIIYLSLLNLFLFIVI 423
Cdd:PRK06589 443 KPSLSENSFITKslpylmQISVITCCCALTLFYFIQI 479
|
|
| PRK12665 |
PRK12665 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
135-269 |
8.72e-03 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 237165 [Multi-domain] Cd Length: 521 Bit Score: 38.41 E-value: 8.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 135 ILGSVPLLVGICFVGLSNGSFNVIMWGNEGSEISS-----MYLLIILIFLTKIPVFPFHGWLPLVHAEASSPVSIILSGY 209
Cdd:PRK12665 171 MVSSLLFLIGIALVYAATGTLNMADLAVRLDELPSgtrtaLFAVLLVAFGIKAAVFPLSFWLPDSYPTAPAPVTAVFAGL 250
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 12249135 210 IMKLGLVGLVR-----LCGCVLVDYLYGYSIFLLgysVVYLIAAMLECDAKRWLAYLSLSH---MLIG 269
Cdd:PRK12665 251 LTKVGVYAIIRthtllFPGGGLDTLLMVVALLTM---VVGILGAIAQSDIKRLLSFTLVSHigyMVFG 315
|
|
| PRK12644 |
PRK12644 |
putative monovalent cation/H+ antiporter subunit A; Reviewed |
85-203 |
9.47e-03 |
|
putative monovalent cation/H+ antiporter subunit A; Reviewed
Pssm-ID: 237154 [Multi-domain] Cd Length: 965 Bit Score: 38.37 E-value: 9.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12249135 85 ASSMVTYVVS-NSLVFWFFYEL-SIISalYLLIvnSPYPERYVSSWYFGGYII---LGSVPLLVGICFVGLSNGSFN--- 156
Cdd:PRK12644 116 AGAMFGLVTSdNLLLLYVFWELtTVLS--FLLI--GHYAERAASRRAALQALLvttAGGLAMLVGIIILGQAAGTYRlse 191
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 12249135 157 VIMWGNEGSEISSMYLLIILIFLTKIPVFPFHGWLPLVHAeASSPVS 203
Cdd:PRK12644 192 LLADPPTGPAVSVAVVLILVGALSKSAIVPFHFWLPGAMA-APTPVS 237
|
|
| |
