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Conserved domains on  [gi|9629360|ref|NP_057850|]
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Pr55(Gag) [Human immunodeficiency virus 1]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Gag_p17 pfam00540
gag gene protein p17 (matrix protein); The matrix protein forms an icosahedral shell ...
 2-132 6.85e-72

gag gene protein p17 (matrix protein); The matrix protein forms an icosahedral shell associated with the inner membrane of the mature immunodeficiency virus.


:

Pssm-ID: 249943  Cd Length: 140  Bit Score: 224.82  E-value: 6.85e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9629360      2 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNT 81
Cdd:pfam00540   1 GARASVLSGGELDKWEKIRLRPGGKKKYKLKHLVWASRELERFAVNPGLLETSEGCRKILGQLQPSLQTGSEGLRSLYNT 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 9629360     82 VATLYCVHQRIEIKDTKEALDKIEEEQNKSKKK-------AQQAA--ADTGHSNQVSQNY 132
Cdd:pfam00540  81 VAVLYCVHQRIDVKDTKEALEKIEEEQNKSKKKktavppgAQQAAntGGTGNSSGVSQNY 140
Gag_p24_C pfam19317
Gag protein p24 C-terminal domain; p24 forms inner protein layer of the nucleocapsid. ELISA ...
 276-349 1.19e-39

Gag protein p24 C-terminal domain; p24 forms inner protein layer of the nucleocapsid. ELISA tests for p24 is the most commonly used method to demonstrate virus replication both in vivo and in vitro.


:

Pssm-ID: 466038  Cd Length: 74  Bit Score: 138.00  E-value: 1.19e-39
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 9629360    276 MYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTA 349
Cdd:pfam19317   1 GYKPTSLADIRQGPKEPYQDFVARLYDALRKEMPDGKAKDVITKQLAYENANPECQDLLKPLGKTGTLSDMIRA 74
Gag_p6 pfam08705
Gag protein p6; HIV protein p6 contains two late-budding domains (L domains) which are short ...
 449-486 2.50e-16

Gag protein p6; HIV protein p6 contains two late-budding domains (L domains) which are short sequence motifs essential for viral particle release. p6 interacts with the endosomal sorting complex and represents a docking site for several cellular and binding factors. The PTAP motif interacts with the cellular budding factor TSG101. This domain is also found in some chimpanzee immunodeficiency virus (SIV-cpz) proteins.


:

Pssm-ID: 312289  Cd Length: 37  Bit Score: 72.26  E-value: 2.50e-16
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 9629360    449 LQSRPEPTAPPEESFRSGvETTTPPQKQEPIDKELYPL 486
Cdd:pfam08705   1 LQSRPEPTAPPAESFGFG-EEITPSPKQEQKDKELYPL 37
Gag_p24 pfam00607
gag protein p24 N-terminal domain; p24 forms inner protein layer of the nucleocapsid. ELISA ...
 143-250 1.39e-13

gag protein p24 N-terminal domain; p24 forms inner protein layer of the nucleocapsid. ELISA tests for p24 is the most commonly used method to demonstrate virus replication both in vivo and in vitro.


:

Pssm-ID: 459864  Cd Length: 128  Bit Score: 67.30  E-value: 1.39e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9629360    143 VHQAISPRTLNAWVKVVEEKAF-SPEVIPMFSALSEG--ATPQDLNTMLNTVGGHqAAMQMLKETINEEAAEWDRvHPVH 219
Cdd:pfam00607   1 VWEPLDFKLLKELKKAVKQYGPnSPYTMQLLEALASSnaLTPYDWRTLAKAVLSP-GQYLLWKAEWQELAQEQAR-RNQR 78

                          90       100       110
                  ....*....|....*....|....*....|....
gi 9629360    220 AGPIapgqmrEPRGSD-IAGTT--STLQEQIGWM 250
Cdd:pfam00607  79 AGPD------RGITLDmLTGTGqyATPQAQAQLP 106
PTZ00368 super family cl31762
universal minicircle sequence binding protein (UMSBP); Provisional
 349-429 2.28e-11

universal minicircle sequence binding protein (UMSBP); Provisional


The actual alignment was detected with superfamily member PTZ00368:

Pssm-ID: 173561 [Multi-domain]  Cd Length: 148  Bit Score: 61.75  E-value: 2.28e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9629360   349 ACQGVGGPGHKARvlaeamsQVTNSAtimmqrgnfRNQRKIVKCFNCGKEGHTARNCRAPRKKG-----CWKCGKEGHQM 423
Cdd:PTZ00368  79 SCYNCGQTGHISR-------ECPNRA---------KGGAARRACYNCGGEGHISRDCPNAGKRPggdktCYNCGQTGHLS 142


                 ....*.
gi 9629360   424 KDCTER 429
Cdd:PTZ00368 143 RDCPDK 148
 
Name Accession Description Interval E-value
Gag_p17 pfam00540
gag gene protein p17 (matrix protein); The matrix protein forms an icosahedral shell ...
 2-132 6.85e-72

gag gene protein p17 (matrix protein); The matrix protein forms an icosahedral shell associated with the inner membrane of the mature immunodeficiency virus.


Pssm-ID: 249943  Cd Length: 140  Bit Score: 224.82  E-value: 6.85e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9629360      2 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNT 81
Cdd:pfam00540   1 GARASVLSGGELDKWEKIRLRPGGKKKYKLKHLVWASRELERFAVNPGLLETSEGCRKILGQLQPSLQTGSEGLRSLYNT 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 9629360     82 VATLYCVHQRIEIKDTKEALDKIEEEQNKSKKK-------AQQAA--ADTGHSNQVSQNY 132
Cdd:pfam00540  81 VAVLYCVHQRIDVKDTKEALEKIEEEQNKSKKKktavppgAQQAAntGGTGNSSGVSQNY 140
Gag_p24_C pfam19317
Gag protein p24 C-terminal domain; p24 forms inner protein layer of the nucleocapsid. ELISA ...
 276-349 1.19e-39

Gag protein p24 C-terminal domain; p24 forms inner protein layer of the nucleocapsid. ELISA tests for p24 is the most commonly used method to demonstrate virus replication both in vivo and in vitro.


Pssm-ID: 466038  Cd Length: 74  Bit Score: 138.00  E-value: 1.19e-39
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 9629360    276 MYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTA 349
Cdd:pfam19317   1 GYKPTSLADIRQGPKEPYQDFVARLYDALRKEMPDGKAKDVITKQLAYENANPECQDLLKPLGKTGTLSDMIRA 74
Gag_p6 pfam08705
Gag protein p6; HIV protein p6 contains two late-budding domains (L domains) which are short ...
 449-486 2.50e-16

Gag protein p6; HIV protein p6 contains two late-budding domains (L domains) which are short sequence motifs essential for viral particle release. p6 interacts with the endosomal sorting complex and represents a docking site for several cellular and binding factors. The PTAP motif interacts with the cellular budding factor TSG101. This domain is also found in some chimpanzee immunodeficiency virus (SIV-cpz) proteins.


Pssm-ID: 312289  Cd Length: 37  Bit Score: 72.26  E-value: 2.50e-16
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 9629360    449 LQSRPEPTAPPEESFRSGvETTTPPQKQEPIDKELYPL 486
Cdd:pfam08705   1 LQSRPEPTAPPAESFGFG-EEITPSPKQEQKDKELYPL 37
Gag_p24 pfam00607
gag protein p24 N-terminal domain; p24 forms inner protein layer of the nucleocapsid. ELISA ...
 143-250 1.39e-13

gag protein p24 N-terminal domain; p24 forms inner protein layer of the nucleocapsid. ELISA tests for p24 is the most commonly used method to demonstrate virus replication both in vivo and in vitro.


Pssm-ID: 459864  Cd Length: 128  Bit Score: 67.30  E-value: 1.39e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9629360    143 VHQAISPRTLNAWVKVVEEKAF-SPEVIPMFSALSEG--ATPQDLNTMLNTVGGHqAAMQMLKETINEEAAEWDRvHPVH 219
Cdd:pfam00607   1 VWEPLDFKLLKELKKAVKQYGPnSPYTMQLLEALASSnaLTPYDWRTLAKAVLSP-GQYLLWKAEWQELAQEQAR-RNQR 78

                          90       100       110
                  ....*....|....*....|....*....|....
gi 9629360    220 AGPIapgqmrEPRGSD-IAGTT--STLQEQIGWM 250
Cdd:pfam00607  79 AGPD------RGITLDmLTGTGqyATPQAQAQLP 106
PTZ00368 PTZ00368
universal minicircle sequence binding protein (UMSBP); Provisional
 349-429 2.28e-11

universal minicircle sequence binding protein (UMSBP); Provisional


Pssm-ID: 173561 [Multi-domain]  Cd Length: 148  Bit Score: 61.75  E-value: 2.28e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9629360   349 ACQGVGGPGHKARvlaeamsQVTNSAtimmqrgnfRNQRKIVKCFNCGKEGHTARNCRAPRKKG-----CWKCGKEGHQM 423
Cdd:PTZ00368  79 SCYNCGQTGHISR-------ECPNRA---------KGGAARRACYNCGGEGHISRDCPNAGKRPggdktCYNCGQTGHLS 142


                 ....*.
gi 9629360   424 KDCTER 429
Cdd:PTZ00368 143 RDCPDK 148
AIR1 COG5082
Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational ...
 349-448 3.65e-06

Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion];


Pssm-ID: 227414 [Multi-domain]  Cd Length: 190  Bit Score: 47.54  E-value: 3.65e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9629360  349 ACQGVGGPGHKAR----VLAEAMSQVTNSATIMMQRgnfrnqrkiVKCFNCGKEGHTARNC--RAPRKKGCWKCGKEGHQ 422
Cdd:COG5082  62 VCFNCGQNGHLRRdcphSICYNCSWDGHRSNHCPKP---------KKCYNCGETGHLSRDCnpSKDQQKSCFDCNSTRHS 132

                        90       100
                ....*....|....*....|....*.
gi 9629360  423 MKDCTErqanflgkIWPSYKGRPGNF 448
Cdd:COG5082 133 SEDCPS--------IWKHYVLNNGDG 150
ZnF_C2HC smart00343
zinc finger;
391-406 6.85e-05

zinc finger;


Pssm-ID: 197667 [Multi-domain]  Cd Length: 17  Bit Score: 39.73  E-value: 6.85e-05
                           10
                   ....*....|....*.
gi 9629360     391 KCFNCGKEGHTARNCR 406
Cdd:smart00343   1 KCYNCGKEGHIARDCP 16
zf-CCHC pfam00098
Zinc knuckle; The zinc knuckle is a zinc binding motif composed of the the following ...
 390-405 3.08e-04

Zinc knuckle; The zinc knuckle is a zinc binding motif composed of the the following CX2CX4HX4C where X can be any amino acid. The motifs are mostly from retroviral gag proteins (nucleocapsid). Prototype structure is from HIV. Also contains members involved in eukaryotic gene regulation, such as C. elegans GLH-1. Structure is an 18-residue zinc finger.


Pssm-ID: 395050 [Multi-domain]  Cd Length: 18  Bit Score: 37.89  E-value: 3.08e-04
                          10
                  ....*....|....*.
gi 9629360    390 VKCFNCGKEGHTARNC 405
Cdd:pfam00098   1 GKCYNCGEPGHIARDC 16
 
Name Accession Description Interval E-value
Gag_p17 pfam00540
gag gene protein p17 (matrix protein); The matrix protein forms an icosahedral shell ...
 2-132 6.85e-72

gag gene protein p17 (matrix protein); The matrix protein forms an icosahedral shell associated with the inner membrane of the mature immunodeficiency virus.


Pssm-ID: 249943  Cd Length: 140  Bit Score: 224.82  E-value: 6.85e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9629360      2 GARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNT 81
Cdd:pfam00540   1 GARASVLSGGELDKWEKIRLRPGGKKKYKLKHLVWASRELERFAVNPGLLETSEGCRKILGQLQPSLQTGSEGLRSLYNT 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 9629360     82 VATLYCVHQRIEIKDTKEALDKIEEEQNKSKKK-------AQQAA--ADTGHSNQVSQNY 132
Cdd:pfam00540  81 VAVLYCVHQRIDVKDTKEALEKIEEEQNKSKKKktavppgAQQAAntGGTGNSSGVSQNY 140
Gag_p24_C pfam19317
Gag protein p24 C-terminal domain; p24 forms inner protein layer of the nucleocapsid. ELISA ...
 276-349 1.19e-39

Gag protein p24 C-terminal domain; p24 forms inner protein layer of the nucleocapsid. ELISA tests for p24 is the most commonly used method to demonstrate virus replication both in vivo and in vitro.


Pssm-ID: 466038  Cd Length: 74  Bit Score: 138.00  E-value: 1.19e-39
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 9629360    276 MYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTA 349
Cdd:pfam19317   1 GYKPTSLADIRQGPKEPYQDFVARLYDALRKEMPDGKAKDVITKQLAYENANPECQDLLKPLGKTGTLSDMIRA 74
Gag_p6 pfam08705
Gag protein p6; HIV protein p6 contains two late-budding domains (L domains) which are short ...
 449-486 2.50e-16

Gag protein p6; HIV protein p6 contains two late-budding domains (L domains) which are short sequence motifs essential for viral particle release. p6 interacts with the endosomal sorting complex and represents a docking site for several cellular and binding factors. The PTAP motif interacts with the cellular budding factor TSG101. This domain is also found in some chimpanzee immunodeficiency virus (SIV-cpz) proteins.


Pssm-ID: 312289  Cd Length: 37  Bit Score: 72.26  E-value: 2.50e-16
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 9629360    449 LQSRPEPTAPPEESFRSGvETTTPPQKQEPIDKELYPL 486
Cdd:pfam08705   1 LQSRPEPTAPPAESFGFG-EEITPSPKQEQKDKELYPL 37
Gag_p24 pfam00607
gag protein p24 N-terminal domain; p24 forms inner protein layer of the nucleocapsid. ELISA ...
 143-250 1.39e-13

gag protein p24 N-terminal domain; p24 forms inner protein layer of the nucleocapsid. ELISA tests for p24 is the most commonly used method to demonstrate virus replication both in vivo and in vitro.


Pssm-ID: 459864  Cd Length: 128  Bit Score: 67.30  E-value: 1.39e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9629360    143 VHQAISPRTLNAWVKVVEEKAF-SPEVIPMFSALSEG--ATPQDLNTMLNTVGGHqAAMQMLKETINEEAAEWDRvHPVH 219
Cdd:pfam00607   1 VWEPLDFKLLKELKKAVKQYGPnSPYTMQLLEALASSnaLTPYDWRTLAKAVLSP-GQYLLWKAEWQELAQEQAR-RNQR 78

                          90       100       110
                  ....*....|....*....|....*....|....
gi 9629360    220 AGPIapgqmrEPRGSD-IAGTT--STLQEQIGWM 250
Cdd:pfam00607  79 AGPD------RGITLDmLTGTGqyATPQAQAQLP 106
PTZ00368 PTZ00368
universal minicircle sequence binding protein (UMSBP); Provisional
 349-429 2.28e-11

universal minicircle sequence binding protein (UMSBP); Provisional


Pssm-ID: 173561 [Multi-domain]  Cd Length: 148  Bit Score: 61.75  E-value: 2.28e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9629360   349 ACQGVGGPGHKARvlaeamsQVTNSAtimmqrgnfRNQRKIVKCFNCGKEGHTARNCRAPRKKG-----CWKCGKEGHQM 423
Cdd:PTZ00368  79 SCYNCGQTGHISR-------ECPNRA---------KGGAARRACYNCGGEGHISRDCPNAGKRPggdktCYNCGQTGHLS 142


                 ....*.
gi 9629360   424 KDCTER 429
Cdd:PTZ00368 143 RDCPDK 148
PTZ00368 PTZ00368
universal minicircle sequence binding protein (UMSBP); Provisional
 348-430 1.15e-10

universal minicircle sequence binding protein (UMSBP); Provisional


Pssm-ID: 173561 [Multi-domain]  Cd Length: 148  Bit Score: 59.82  E-value: 1.15e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9629360   348 TACQGVGGPGHKARvlaeamsQVTNSATIMMQRGnfrnqrkiVKCFNCGKEGHTARNCRAPRKKG----CWKCGKEGHQM 423
Cdd:PTZ00368   1 MVCYRCGGVGHQSR-------ECPNSAPAGAAKA--------RPCYKCGEPGHLSRECPSAPGGRgersCYNCGKTGHLS 65


                 ....*..
gi 9629360   424 KDCTERQ 430
Cdd:PTZ00368  66 RECPEAP 72
PTZ00368 PTZ00368
universal minicircle sequence binding protein (UMSBP); Provisional
 349-426 4.73e-09

universal minicircle sequence binding protein (UMSBP); Provisional


Pssm-ID: 173561 [Multi-domain]  Cd Length: 148  Bit Score: 55.20  E-value: 4.73e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9629360   349 ACQGVGGPGHKARVLAEAmsqvtnsatimmqrgnfRNQRKIVKCFNCGKEGHTARNCRAPRKKG-----CWKCGKEGHQM 423
Cdd:PTZ00368  54 SCYNCGKTGHLSRECPEA-----------------PPGSGPRSCYNCGQTGHISRECPNRAKGGaarraCYNCGGEGHIS 116


                 ...
gi 9629360   424 KDC 426
Cdd:PTZ00368 117 RDC 119
AIR1 COG5082
Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational ...
 349-448 3.65e-06

Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion];


Pssm-ID: 227414 [Multi-domain]  Cd Length: 190  Bit Score: 47.54  E-value: 3.65e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 9629360  349 ACQGVGGPGHKAR----VLAEAMSQVTNSATIMMQRgnfrnqrkiVKCFNCGKEGHTARNC--RAPRKKGCWKCGKEGHQ 422
Cdd:COG5082  62 VCFNCGQNGHLRRdcphSICYNCSWDGHRSNHCPKP---------KKCYNCGETGHLSRDCnpSKDQQKSCFDCNSTRHS 132

                        90       100
                ....*....|....*....|....*.
gi 9629360  423 MKDCTErqanflgkIWPSYKGRPGNF 448
Cdd:COG5082 133 SEDCPS--------IWKHYVLNNGDG 150
ZnF_C2HC smart00343
zinc finger;
391-406 6.85e-05

zinc finger;


Pssm-ID: 197667 [Multi-domain]  Cd Length: 17  Bit Score: 39.73  E-value: 6.85e-05
                           10
                   ....*....|....*.
gi 9629360     391 KCFNCGKEGHTARNCR 406
Cdd:smart00343   1 KCYNCGKEGHIARDCP 16
ZnF_C2HC smart00343
zinc finger;
412-428 7.27e-05

zinc finger;


Pssm-ID: 197667 [Multi-domain]  Cd Length: 17  Bit Score: 39.73  E-value: 7.27e-05
                           10
                   ....*....|....*..
gi 9629360     412 GCWKCGKEGHQMKDCTE 428
Cdd:smart00343   1 KCYNCGKEGHIARDCPS 17
zf-CCHC pfam00098
Zinc knuckle; The zinc knuckle is a zinc binding motif composed of the the following ...
 390-405 3.08e-04

Zinc knuckle; The zinc knuckle is a zinc binding motif composed of the the following CX2CX4HX4C where X can be any amino acid. The motifs are mostly from retroviral gag proteins (nucleocapsid). Prototype structure is from HIV. Also contains members involved in eukaryotic gene regulation, such as C. elegans GLH-1. Structure is an 18-residue zinc finger.


Pssm-ID: 395050 [Multi-domain]  Cd Length: 18  Bit Score: 37.89  E-value: 3.08e-04
                          10
                  ....*....|....*.
gi 9629360    390 VKCFNCGKEGHTARNC 405
Cdd:pfam00098   1 GKCYNCGEPGHIARDC 16
zf-CCHC pfam00098
Zinc knuckle; The zinc knuckle is a zinc binding motif composed of the the following ...
 411-428 6.60e-04

Zinc knuckle; The zinc knuckle is a zinc binding motif composed of the the following CX2CX4HX4C where X can be any amino acid. The motifs are mostly from retroviral gag proteins (nucleocapsid). Prototype structure is from HIV. Also contains members involved in eukaryotic gene regulation, such as C. elegans GLH-1. Structure is an 18-residue zinc finger.


Pssm-ID: 395050 [Multi-domain]  Cd Length: 18  Bit Score: 36.74  E-value: 6.60e-04
                          10
                  ....*....|....*...
gi 9629360    411 KGCWKCGKEGHQMKDCTE 428
Cdd:pfam00098   1 GKCYNCGEPGHIARDCPK 18
zf-CCHC_6 pfam15288
Zinc knuckle; This Zinc knuckle is found in FAM90A mammalian proteins.
 390-414 4.10e-03

Zinc knuckle; This Zinc knuckle is found in FAM90A mammalian proteins.


Pssm-ID: 464616 [Multi-domain]  Cd Length: 42  Bit Score: 35.05  E-value: 4.10e-03
                          10        20
                  ....*....|....*....|....*
gi 9629360    390 VKCFNCGKEGHTARNCRAPRKkgCW 414
Cdd:pfam15288   2 VKCKNCGAFGHTARSKRCPIK--CW 24
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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