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Conserved domains on  [gi|7525038|ref|NP_051064|]
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NADH dehydrogenase subunit 3 (chloroplast) [Arabidopsis thaliana]

Protein Classification

NAD(P)H-quinone oxidoreductase subunit 3( domain architecture ID 10000018)

NAD(P)H-quinone oxidoreductase subunit 3 (NDH-C) is part of the NDH-1 complex that catalyzes the transfer of electrons from NAD(P)H to quinone in a respiratory and/or photosynthetic chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ndhC CHL00022
NADH dehydrogenase subunit 3
 1-120 6.50e-76

NADH dehydrogenase subunit 3


:

Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 220.24  E-value: 6.50e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525038     1 MFLLYEYDIFWAFLLISSAIPVLAFLISGVLSPIRKGPEKLSSYESGIEPIGDAWLQFRIRYYMFALVFVVFDVETVFLY 80
Cdd:CHL00022   1 MFLLYEYDIFWAFLIISSLIPILAFLISGLLAPISKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLY 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 7525038    81 PWAMSFDVLGVSAFIEAFIFVLILILGLVYAWRKGALEWS 120
Cdd:CHL00022  81 PWAMSFDVLGVSAFIEALIFVLILIVGLVYAWRKGALEWS 120
 
Name Accession Description Interval E-value
ndhC CHL00022
NADH dehydrogenase subunit 3
 1-120 6.50e-76

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 220.24  E-value: 6.50e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525038     1 MFLLYEYDIFWAFLLISSAIPVLAFLISGVLSPIRKGPEKLSSYESGIEPIGDAWLQFRIRYYMFALVFVVFDVETVFLY 80
Cdd:CHL00022   1 MFLLYEYDIFWAFLIISSLIPILAFLISGLLAPISKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLY 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 7525038    81 PWAMSFDVLGVSAFIEAFIFVLILILGLVYAWRKGALEWS 120
Cdd:CHL00022  81 PWAMSFDVLGVSAFIEALIFVLILIVGLVYAWRKGALEWS 120
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 3-119 2.27e-40

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 130.24  E-value: 2.27e-40
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525038    3 LLYEYDIFWAFLLISSAIPVLAFLISGVLSPIRKGPEKLSSYESGIEPIGDAWLQFRIRYYMFALVFVVFDVETVFLYPW 82
Cdd:COG0838   1 MLSDYLPILIFLLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPW 80

                        90       100       110
                ....*....|....*....|....*....|....*..
gi 7525038   83 AMSFDVLGVSAFIEAFIFVLILILGLVYAWRKGALEW 119
Cdd:COG0838  81 AVVFRELGWFGLIEMLVFIAILLVGLIYAWKKGALEW 117
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
25-118 1.49e-39

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 127.15  E-value: 1.49e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525038     25 FLISGVLSPIRKGPEKLSSYESGIEPIGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSAFIEAFIFVLIL 104
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGWFGFVEMLIFIAIL 80

                          90
                  ....*....|....
gi 7525038    105 ILGLVYAWRKGALE 118
Cdd:pfam00507  81 LVGLVYAWKKGALE 94
 
Name Accession Description Interval E-value
ndhC CHL00022
NADH dehydrogenase subunit 3
 1-120 6.50e-76

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 220.24  E-value: 6.50e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525038     1 MFLLYEYDIFWAFLLISSAIPVLAFLISGVLSPIRKGPEKLSSYESGIEPIGDAWLQFRIRYYMFALVFVVFDVETVFLY 80
Cdd:CHL00022   1 MFLLYEYDIFWAFLIISSLIPILAFLISGLLAPISKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLY 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 7525038    81 PWAMSFDVLGVSAFIEAFIFVLILILGLVYAWRKGALEWS 120
Cdd:CHL00022  81 PWAMSFDVLGVSAFIEALIFVLILIVGLVYAWRKGALEWS 120
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 1-120 6.73e-46

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 144.24  E-value: 6.73e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525038     1 MFLLYEYDIFWAFLLISSAIPVLAFLISGVLSPIRKGPEKLSSYESGIEPIGDAWLQFRIRYYMFALVFVVFDVETVFLY 80
Cdd:PRK06602   2 TEVLAHYLPFLIFLIVAIGLGILLLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFLF 81

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 7525038    81 PWAMSFDVLGVSAFIEAFIFVLILILGLVYAWRKGALEWS 120
Cdd:PRK06602  82 PWAVSFREIGWLGFVEAMIFILVLLVGLVYLWRKGALDWE 121
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 3-119 2.27e-40

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 130.24  E-value: 2.27e-40
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525038    3 LLYEYDIFWAFLLISSAIPVLAFLISGVLSPIRKGPEKLSSYESGIEPIGDAWLQFRIRYYMFALVFVVFDVETVFLYPW 82
Cdd:COG0838   1 MLSDYLPILIFLLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPW 80

                        90       100       110
                ....*....|....*....|....*....|....*..
gi 7525038   83 AMSFDVLGVSAFIEAFIFVLILILGLVYAWRKGALEW 119
Cdd:COG0838  81 AVVFRELGWFGLIEMLVFIAILLVGLIYAWKKGALEW 117
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
25-118 1.49e-39

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 127.15  E-value: 1.49e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525038     25 FLISGVLSPIRKGPEKLSSYESGIEPIGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSAFIEAFIFVLIL 104
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGWFGFVEMLIFIAIL 80

                          90
                  ....*....|....
gi 7525038    105 ILGLVYAWRKGALE 118
Cdd:pfam00507  81 LVGLVYAWKKGALE 94
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
7-119 5.63e-35

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 116.77  E-value: 5.63e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525038     7 YDIFWAFLLISSAIPVLAFLISGVLSPIRKGPEKLSSYESGIEPIGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSF 86
Cdd:PRK07756   9 YMIVLIFLLLGILLPVVALTLGRMLRPNKPSAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYPWAVAY 88

                         90       100       110
                 ....*....|....*....|....*....|...
gi 7525038    87 DVLGVSAFIEAFIFVLILILGLVYAWRKGALEW 119
Cdd:PRK07756  89 DKLGLFALIEMLIFVVMLLVGLAYAWKKKVLQW 121
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 16-119 9.97e-23

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 85.49  E-value: 9.97e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525038    16 ISSAIPVLAFLISGVLSPIRKGPEKLSSYESGIEPIGDAW--LQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSA 93
Cdd:PRK07928  13 LAAAFAVVSVVVASLVGPKRYNRAKLEAYECGIEPTPQPAggGRFPVKYYLTAMLFIVFDIEIVFLYPWAVSFDALGVFG 92

                         90       100
                 ....*....|....*....|....*.
gi 7525038    94 FIEAFIFVLILILGLVYAWRKGALEW 119
Cdd:PRK07928  93 LVEMALFMLTVFVAYAYVWRRGGLEW 118
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
10-119 7.40e-22

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 83.56  E-value: 7.40e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525038    10 FWAFLLISsaipVLAFLISGVLSPIRKGPEKLSSYESGIEPIGDAwLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVL 89
Cdd:PRK08489  21 FVAFFLTT----RLARFISRKLAQKNTEKLKLAIYECGPEPVKQP-NRISSHFYIMALLFILFDVEIVFMFPWAVDFKLL 95

                         90       100       110
                 ....*....|....*....|....*....|
gi 7525038    90 GVSAFIEAFIFVLILILGLVYAWRKGALEW 119
Cdd:PRK08489  96 GLFGLIEMLLFIVLLTIGFIYAWKKGALEW 125
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 14-119 2.59e-17

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 71.45  E-value: 2.59e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525038    14 LLISSAIPVLAFLISGVLSPIRKGPEKLSSYESGIEPIGDAWLQFRIRYYMFALVFVVFDVETVFLYP--WAMSFDVLgV 91
Cdd:MTH00113   7 LTISLALSTILTTLNFWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPlpWAINLTTP-T 85

                         90       100
                 ....*....|....*....|....*...
gi 7525038    92 SAFIEAFIFVLILILGLVYAWRKGALEW 119
Cdd:MTH00113  86 TTLTWATIILTLLTLGLIYEWLQGGLEW 113
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 13-119 1.08e-15

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 67.33  E-value: 1.08e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525038    13 FLLISSAIPVLAFLISGVLSPIRKGPEKLSSYESGIEPIGDAWLQFRIRYYMFALVFVVFDVETVFLY--PWAMSFDVLG 90
Cdd:MTH00069   5 MLLISTILSLILITISFWLPLNNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLptPWASQLNTPT 84

                         90       100
                 ....*....|....*....|....*....
gi 7525038    91 VSAFIEAFIFVLiLILGLVYAWRKGALEW 119
Cdd:MTH00069  85 NTLFWSTLILIL-LTLGLIYEWIQGGLEW 112
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 9-120 1.33e-15

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 67.19  E-value: 1.33e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525038     9 IFWAFLLISSAIPVLAFLISGVLSPIRKGPEKLSSYESGIEPIGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSF-D 87
Cdd:MTH00148   4 ILLSLLFALILSPVLLLLGLVLSKRSYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQSLgS 83

                         90       100       110
                 ....*....|....*....|....*....|...
gi 7525038    88 VLGVSAFIEAFIFVLILILGLVYAWRKGALEWS 120
Cdd:MTH00148  84 SFSVWSLTSLFIFLLILILGLFHEWNEGSLDWV 116
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 14-119 5.83e-15

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 65.50  E-value: 5.83e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525038    14 LLISSAIPVLAFLISGVLSPIRKGPEKLSSYESGIEPIGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSA 93
Cdd:MTH00055  12 LLFSIGLSTVISGASYIVGVKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWCVVYNQIGLFG 91

                         90       100
                 ....*....|....*....|....*.
gi 7525038    94 FIEAFIFVLILILGLVYAWRKGALEW 119
Cdd:MTH00055  92 FWVMYLFLIILTIGLIYEWVKGGLEW 117
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 9-119 1.07e-14

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 64.70  E-value: 1.07e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525038     9 IFWAFLLISSAIPVLAFLISGVLSPIRkgpEKLSSYESGIEPIGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDV 88
Cdd:MTH00018   5 ILLIFSVVLSALFSGASYFLGVKQPDR---EKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPWCVLYNQ 81

                         90       100       110
                 ....*....|....*....|....*....|.
gi 7525038    89 LGVSAFIEAFIFVLILILGLVYAWRKGALEW 119
Cdd:MTH00018  82 IAPFGFWTMVGFLFILTLGLIYEWIKGGLEW 112
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 13-119 1.37e-14

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 64.41  E-value: 1.37e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525038    13 FLLISSAIPVLAFLISGVLSPIRkgpEKLSSYESGIEPIGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVS 92
Cdd:MTH00161   9 ILLISIILMILASLLSKKSIMDR---EKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFKTSNMM 85

                         90       100
                 ....*....|....*....|....*...
gi 7525038    93 AF-IEAFIFVLILILGLVYAWRKGALEW 119
Cdd:MTH00161  86 SWlITSSFFILILLLGLYYEWNQGALEW 113
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 35-119 6.38e-14

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 63.03  E-value: 6.38e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525038    35 RKGPEKLSSYESGIEPIGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSAFIEAFIFVLILILGLVYAWRK 114
Cdd:MTH00030  38 KPDSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWSIVFNQLNLFSFWIVYTFLIVLAIGLAYEWIK 117


                 ....*
gi 7525038   115 GALEW 119
Cdd:MTH00030 118 GGLEW 122
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 14-119 9.17e-14

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 62.24  E-value: 9.17e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525038    14 LLISSAIPVLAFLISGVLSPIRKGPEKLSSYESGIEPIGDAWLQFRIRYYMFALVFVVFDVETVFLYP--WAmsfDVLG- 90
Cdd:MTH00136   8 LTITIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPlpWG---DQLPs 84

                         90       100       110
                 ....*....|....*....|....*....|
gi 7525038    91 -VSAFIEAFIFVLILILGLVYAWRKGALEW 119
Cdd:MTH00136  85 pLLTFFWATAVLILLTLGLIYEWLQGGLEW 114
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 14-120 1.88e-12

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 59.10  E-value: 1.88e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525038    14 LLISSAIPVLAFLISGVL-SPIRKGPEKLSSYESGIEPIGDAWLQFRIRYYMFALVFVVFDVETVFLYPWA---MSFDVL 89
Cdd:MTH00012   8 MMISLILPPLVLGAAWVLaARSTADREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPtilMTSTSK 87

                         90       100       110
                 ....*....|....*....|....*....|.
gi 7525038    90 GVsaFIEAFIFVLILILGLVYAWRKGALEWS 120
Cdd:MTH00012  88 TV--VYTSILFLLILVIGLIHEWREGSLDWS 116
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 14-120 2.53e-12

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 58.80  E-value: 2.53e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525038    14 LLISSAIPVLAFLISGVLSPIRKGPEKLSSYESGIEPIGDAWLQFRIRYYMFALVFVVFDVETVFLY--PWAMSFDVLGV 91
Cdd:MTH00106   7 LLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLplPWASQTNNLNT 86

                         90       100
                 ....*....|....*....|....*....
gi 7525038    92 SaFIEAFIFVLILILGLVYAWRKGALEWS 120
Cdd:MTH00106  87 M-LTMALLLISLLALSLAYEWTQKGLEWT 114
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 13-119 2.74e-12

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 58.45  E-value: 2.74e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525038    13 FLLISSAIPVLAFLISGVLSPIRKGPEKLSSYESGIEPIGDAWLQFRIRYYMFALVFVVFDVETVFLYPW-AMSFDVLGV 91
Cdd:MTH00042   7 FLLIILILTSLLLLAGHFLPSRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLpPATLITNPS 86

                         90       100
                 ....*....|....*....|....*...
gi 7525038    92 SAFIEAFIFVLILILGLVYAWRKGALEW 119
Cdd:MTH00042  87 TLLPISLIFLIILTIGLVYEWVNGGLEW 114
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 14-119 2.50e-11

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 56.15  E-value: 2.50e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525038    14 LLISSAIPVLAFLISGVLSP-IRKGPEKLSSYESGIEPIGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMS-FDVLGV 91
Cdd:MTH00202   8 SILSILISSLLFLVSWMLSFrSLMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLVlKSSWSK 87

                         90       100
                 ....*....|....*....|....*...
gi 7525038    92 SAFIEAFIFVLILILGLVYAWRKGALEW 119
Cdd:MTH00202  88 GGLLGGTIFLLILIGGLIHEWKEGSLDW 115
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 13-119 4.35e-11

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 55.29  E-value: 4.35e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525038    13 FLLISSAIPVLAFLISGVLSPIRKGPEKLSSYESGIEPIGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSfDVLGVS 92
Cdd:MTH00203   7 FFLIALLLSLILLFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWS-NQLSSL 85

                         90       100
                 ....*....|....*....|....*..
gi 7525038    93 AFIEAFIFVLILILGLVYAWRKGALEW 119
Cdd:MTH00203  86 SLLLAFLFLILLTLGLIYEWLQGGLEW 112
PRK06432 PRK06432
NADH dehydrogenase subunit A; Validated
 60-119 5.59e-10

NADH dehydrogenase subunit A; Validated


Pssm-ID: 102372  Cd Length: 144  Bit Score: 53.28  E-value: 5.59e-10
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525038    60 IRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSAFIEAFIFVLILILGLVYAWRKGALEW 119
Cdd:PRK06432  83 NQYYIVVLLFVVFDVDMLLLFPWAFDFKRLGLIPFIETLIFLAMPLFAVYYAFKMGYMRW 142
PRK06073 PRK06073
NADH dehydrogenase subunit A; Validated
 15-113 9.61e-05

NADH dehydrogenase subunit A; Validated


Pssm-ID: 235690  Cd Length: 124  Bit Score: 38.82  E-value: 9.61e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525038    15 LISSAIPVLAFLISGV--------LSPIRKGPEKLSSYESGIEPIGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSF 86
Cdd:PRK06073   7 ALAFGLVIVLGLAAGVgtykllklILPSKPTPLKVSRYEAGNPPTGPAKLWLPMQYYGYLLLFLTLEPIVVLLLLIAFAP 86

                         90       100
                 ....*....|....*....|....*..
gi 7525038    87 DVLGVSAFIEAFIFVLILILGLVYAWR 113
Cdd:PRK06073  87 YYTFRDLLLLIVVALVLMYPVLYYAYK 113
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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