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Conserved domains on  [gi|7525033|ref|NP_051059|]
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photosystem I P700 chlorophyll a apoprotein A1 (chloroplast) [Arabidopsis thaliana]

Protein Classification

photosystem I core protein PsaA( domain architecture ID 10000059)

photosystem I core protein PsaA binds P700, the primary electron donor of PSI, which is a plastocyanin-ferredoxin oxidoreductase essential for light-driven electron transport

EC:  1.97.1.12
PubMed:  15573135
SCOP:  3000850
TCDB:  5.B.4

Graphical summary

 Zoom to residue level

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List of domain hits

Name Accession Description Interval E-value
psaA CHL00056
photosystem I P700 chlorophyll a apoprotein A1
1-750 0e+00

photosystem I P700 chlorophyll a apoprotein A1


:

Pssm-ID: 176996  Cd Length: 750  Bit Score: 1594.39  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033     1 MIIRSPEPEVKILVDRDPIKTSFEEWAKPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQLSI 80
Cdd:CHL00056   1 MIIRSPEPEVKILVDRDPVKTSFEKWAKPGHFSRTLAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQLSI 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033    81 IFLWLSGMYFHGARFSNYEAWLSDPTHIGPSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQIWRASGITSELQLYCTA 160
Cdd:CHL00056  81 IFLWLSGMYFHGARFSNYEAWLSDPTHIKPSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQIWRASGITSELQLYCTA 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033   161 IGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQVHVSLPINQFLNAGVDPKEIPLPHEF 240
Cdd:CHL00056 161 IGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQIHVSLPINQLLDAGVDPKEIPLPHEF 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033   241 ILNRDLLAQLYPSFAEGATPFFTLNWSKYSEFLTFRGGLDPVTGGLWLTDIAHHHLAIAILFLIAGHMYRTNWGIGHGIK 320
Cdd:CHL00056 241 ILNRDLLAQLYPSFAKGLTPFFTLNWSEYSDFLTFRGGLNPVTGGLWLTDIAHHHLAIAVLFLIAGHMYRTNWGIGHSLK 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033   321 DILEAHKGPFTGQGHKGLYEILTTSWHAQLSLNLAMLGSLTIIVAHHMYSMPPYPYLATDYATQLSLFTHHMWIGGFLIV 400
Cdd:CHL00056 321 EILEAHKGPFTGEGHKGLYEILTTSWHAQLALNLAMLGSLTIIVAHHMYSMPPYPYLATDYGTQLSLFTHHMWIGGFLIV 400
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033   401 GAAAHAAIFMVRDYDPTNRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPVF 480
Cdd:CHL00056 401 GAAAHAAIFMVRDYDPTTRYNNLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPIF 480
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033   481 AQWIQNTHALAPGVTAPGETASTSLTWGGGELVAVGGKVALLPIPLGTADFLVHHIHAFTIHVTVLILLKGVLFARSSRL 560
Cdd:CHL00056 481 AQWIQNTHALAPGATAPGATASTSLTWGGGDLVAVGGKVALLPIPLGTADFLVHHIHAFTIHVTVLILLKGVLFARSSRL 560
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033   561 IPDKANLGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNAISVVIFHFSWKMQSDVWGSISDQGVVTHITGGNFAQSSIT 640
Cdd:CHL00056 561 IPDKANLGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNSISVVIFHFSWKMQSDVWGSISDQGVVTHITGGNFAQSSIT 640
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033   641 INGWLRDFLWAQASQVIQSYGSSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPATQPRALSII 720
Cdd:CHL00056 641 INGWLRDFLWAQASQVIQSYGSSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPAIQPRALSIV 720
                        730       740       750
                 ....*....|....*....|....*....|
gi 7525033   721 QGRAVGVTHYLLGGIATTWAFFLARIIAVG 750
Cdd:CHL00056 721 QGRAVGVAHYLLGGIATTWAFFLARIIAVG 750
 
Name Accession Description Interval E-value
psaA CHL00056
photosystem I P700 chlorophyll a apoprotein A1
1-750 0e+00

photosystem I P700 chlorophyll a apoprotein A1


Pssm-ID: 176996  Cd Length: 750  Bit Score: 1594.39  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033     1 MIIRSPEPEVKILVDRDPIKTSFEEWAKPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQLSI 80
Cdd:CHL00056   1 MIIRSPEPEVKILVDRDPVKTSFEKWAKPGHFSRTLAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQLSI 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033    81 IFLWLSGMYFHGARFSNYEAWLSDPTHIGPSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQIWRASGITSELQLYCTA 160
Cdd:CHL00056  81 IFLWLSGMYFHGARFSNYEAWLSDPTHIKPSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQIWRASGITSELQLYCTA 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033   161 IGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQVHVSLPINQFLNAGVDPKEIPLPHEF 240
Cdd:CHL00056 161 IGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQIHVSLPINQLLDAGVDPKEIPLPHEF 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033   241 ILNRDLLAQLYPSFAEGATPFFTLNWSKYSEFLTFRGGLDPVTGGLWLTDIAHHHLAIAILFLIAGHMYRTNWGIGHGIK 320
Cdd:CHL00056 241 ILNRDLLAQLYPSFAKGLTPFFTLNWSEYSDFLTFRGGLNPVTGGLWLTDIAHHHLAIAVLFLIAGHMYRTNWGIGHSLK 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033   321 DILEAHKGPFTGQGHKGLYEILTTSWHAQLSLNLAMLGSLTIIVAHHMYSMPPYPYLATDYATQLSLFTHHMWIGGFLIV 400
Cdd:CHL00056 321 EILEAHKGPFTGEGHKGLYEILTTSWHAQLALNLAMLGSLTIIVAHHMYSMPPYPYLATDYGTQLSLFTHHMWIGGFLIV 400
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033   401 GAAAHAAIFMVRDYDPTNRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPVF 480
Cdd:CHL00056 401 GAAAHAAIFMVRDYDPTTRYNNLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPIF 480
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033   481 AQWIQNTHALAPGVTAPGETASTSLTWGGGELVAVGGKVALLPIPLGTADFLVHHIHAFTIHVTVLILLKGVLFARSSRL 560
Cdd:CHL00056 481 AQWIQNTHALAPGATAPGATASTSLTWGGGDLVAVGGKVALLPIPLGTADFLVHHIHAFTIHVTVLILLKGVLFARSSRL 560
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033   561 IPDKANLGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNAISVVIFHFSWKMQSDVWGSISDQGVVTHITGGNFAQSSIT 640
Cdd:CHL00056 561 IPDKANLGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNSISVVIFHFSWKMQSDVWGSISDQGVVTHITGGNFAQSSIT 640
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033   641 INGWLRDFLWAQASQVIQSYGSSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPATQPRALSII 720
Cdd:CHL00056 641 INGWLRDFLWAQASQVIQSYGSSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPAIQPRALSIV 720
                        730       740       750
                 ....*....|....*....|....*....|
gi 7525033   721 QGRAVGVTHYLLGGIATTWAFFLARIIAVG 750
Cdd:CHL00056 721 QGRAVGVAHYLLGGIATTWAFFLARIIAVG 750
psaA TIGR01335
photosystem I core protein PsaA; The core proteins of photosystem I are PsaA and PsaB, ...
1-750 0e+00

photosystem I core protein PsaA; The core proteins of photosystem I are PsaA and PsaB, homologous integral membrane proteins that form a heterodimer. The heterodimer binds the electron-donating chlorophyll dimer P700, as well as chlorophyll, phylloquinone, and 4FE-4S electron acceptors. This model describes PsaA only. [Energy metabolism, Photosynthesis]


Pssm-ID: 130402 [Multi-domain]  Cd Length: 752  Bit Score: 1472.88  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033      1 MIIRSPEPE---VKILVDRDPIKTSFEEWAKPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQ 77
Cdd:TIGR01335   1 MTISPPEREqktAKILVDRDPVPTSFEKWAKPGHFSRTLAKGPKTTTWIWNLHADAHDFDSHTSDLEDISRKIFSAHFGQ 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033     78 LSIIFLWLSGMYFHGARFSNYEAWLSDPTHIGPSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQIWRASGITSELQLY 157
Cdd:TIGR01335  81 LSVIFIWLSGMYFHGARFSNYEAWLSDPTHIKPSAQVVWPIVGQEILNGDVGGGFHGIQITSGFFQLWRASGITNELQLY 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033    158 CTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQVHVSLPINQFLNAGVDPKEIPLP 237
Cdd:TIGR01335 161 VTAIGGLVMAGLMLFAGWFHYHKAAPKLEWFQNVESMLNHHLAGLLGLGSLSWAGHQIHVSLPINKLLDAGVDPKDIPLP 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033    238 HEFILNRDLLAQLYPSFAEGATPFFTLNWSKYSEFLTFRGGLDPVTGGLWLTDIAHHHLAIAILFLIAGHMYRTNWGIGH 317
Cdd:TIGR01335 241 HEFILNRELMAQLYPSFASGLTPFFTLNWGAYSDFLTFRGGLNPVTGGLWLSDIAHHHLAIAVLFIIAGHMYRTNWGIGH 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033    318 GIKDILEAHKGPFTGQGHKGLYEILTTSWHAQLSLNLAMLGSLTIIVAHHMYSMPPYPYLATDYATQLSLFTHHMWIGGF 397
Cdd:TIGR01335 321 SIKEILEAHKGPFTGSGHKGLYEALTTSWHAQLAINLAMLGSLSIIVAHHMYAMPPYPYLATDYPTQLSLFTHHMWIGGF 400
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033    398 LIVGAAAHAAIFMVRDYDPTNRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQ 477
Cdd:TIGR01335 401 LIVGAAAHGAIFMVRDYDPSQNYNNVLDRVIRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMRALGRPQDMFSDTAIQLQ 480
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033    478 PVFAQWIQNTHALAPGVTAPGETASTSLTWgGGELVAVGGKVALLPIPLGTADFLVHHIHAFTIHVTVLILLKGVLFARS 557
Cdd:TIGR01335 481 PVFAQWIQNLHTLAPGNTAPNALATTSYAF-GGEVVAVGGKVAMMPIKLGTADFMVHHIHAFTIHVTVLILLKGVLFARN 559
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033    558 SRLIPDKANLGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNAISVVIFHFSWKMQSDVWGSISDQGVVTHITGGNFAQS 637
Cdd:TIGR01335 560 SRLIPDKANLGFRFPCDGPGRGGTCQVSGWDHVFLGLFWMYNCISVVIFHFSWKMQSDVWGTVSQNGLVSHITGGNFAQS 639
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033    638 SITINGWLRDFLWAQASQVIQSYGSSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPATQPRAL 717
Cdd:TIGR01335 640 AITINGWLRDFLWAQASQVIQSYGSSLSAYGLMFLGAHFIWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPAIQPRAL 719
                         730       740       750
                  ....*....|....*....|....*....|...
gi 7525033    718 SIIQGRAVGVTHYLLGGIATTWAFFLARIIAVG 750
Cdd:TIGR01335 720 SIIQGRAVGVAHYLLGGIATTWAFFLARIISVG 752
PsaA COG5701
Photosystem I reaction center subunit A1, PsaA [Energy production and conversion]; Photosystem ...
1-750 0e+00

Photosystem I reaction center subunit A1, PsaA [Energy production and conversion]; Photosystem I reaction center subunit A1, PsaA is part of the Pathway/BioSystem: Photosystem I


Pssm-ID: 444411  Cd Length: 755  Bit Score: 1367.60  E-value: 0e+00
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033    1 MIIRSPEPE--VKILVDRDPIKTSFEEWAKPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQL 78
Cdd:COG5701   1 MTISPPEREekVRVPVDNDPVPTSFEKWGKPGHFDRTLAKGPKTTTWIWNLHALAHDFDTHTSDLEEISRKIFSAHFGHL 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033   79 SIIFLWLSGMYFHGARFSNYEAWLSDPTHIGPSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQIWRASGITSELQLYC 158
Cdd:COG5701  81 AVVFIWLSGMFFHGARFSNYTAWLADPTGVKPSAQVVWPIVGQEILNADVGGGFHGIQITSGLFQMWRAWGITNEFQLYC 160
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033  159 TAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQVHVSLPINQFLNAGVDPKEIPLPH 238
Cdd:COG5701 161 TAIGALVMAALMLFAGWFHYHKRAPKLEWFQNVESMLNHHLAGLLGLGSLAWTGHLIHVSLPVNALLDAGVAAADIPLPH 240
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033  239 EFiLNRDLLAQLYPSFAEGATPFFTLNWSKYSEFLTFRGGLDPVTGGLWLTDIAHHHLAIAILFLIAGHMYRTNWGIGHG 318
Cdd:COG5701 241 EF-LNPSLMAQLYPGFASGVGPFFTLNWGAFSDFLTFKGGLNPVTGGLWLTDIAHHHLAIAVLFIIAGHMYRTNWGIGHS 319
                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033  319 IKDILEAHKGP---FTG-QGHKGLYEILTTSWHAQLSLNLAMLGSLTIIVAHHMYSMPPYPYLATDYATQLSLFTHHMWI 394
Cdd:COG5701 320 MKEILEAHKGPpllFTGpEGHKGLYEVLTTSWHAQLAINLAMMGSLSIIVAHHMYAMPPYPYLATDYPTQLSLFTHHMWI 399
                       410       420       430       440       450       460       470       480
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033  395 GGFLIVGAAAHAAIFMVRDYDPTNRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAI 474
Cdd:COG5701 400 GGFLIVGAAAHAAIFMVRDYDPAVNQNNVLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMRALGRPQDMFSDTAI 479
                       490       500       510       520       530       540       550       560
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033  475 QLQPVFAQWIQNTHALAPG-VTAPGETASTSLTWGGGeLVAVGGKVALLPIPLGTADFLVHHIHAFTIHVTVLILLKGVL 553
Cdd:COG5701 480 QLQPVFAQWIQNLHASAPGtATAPNAGGTVSEAFGGD-VVAVGGKVAMMPIPLGTADFMIHHIHAFTIHVTVLILLKGVL 558
                       570       580       590       600       610       620       630       640
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033  554 FARSSRLIPDKANLGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNAISVVIFHFSWKMQSDVWGSISDQGVVTHITGGN 633
Cdd:COG5701 559 FARSSRLIPDKANLGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNSLSVVIFHFSWKMQSDVWGTVNADGSVNHITGGN 638
                       650       660       670       680       690       700       710       720
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033  634 FAQSSITINGWLRDFLWAQASQVIQSYGSSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPATQ 713
Cdd:COG5701 639 FAQSSITINGWLRDFLWAQSSQVINSYGSALSAYGLMFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPAIQ 718
                       730       740       750
                ....*....|....*....|....*....|....*..
gi 7525033  714 PRALSIIQGRAVGVTHYLLGGIATTWAFFLARIIAVG 750
Cdd:COG5701 719 PRALSITQGRAVGVAHYLLGGIATTWAFFLARLIALG 755
PsaA_PsaB pfam00223
Photosystem I psaA/psaB protein;
32-744 0e+00

Photosystem I psaA/psaB protein;


Pssm-ID: 459719  Cd Length: 719  Bit Score: 1252.37  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033     32 FSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSDPTHIGPS 111
Cdd:pfam00223   1 FSQDLAQGPKTTRWIWNLHATAHDFESHDGDTEELSRKIFSAHFGHLAIIFLWLSGNLFHGAWFSNFEAWLADPLHVKPI 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033    112 AQVVWPIVGQEILNG--DVGGGFRGIQITSGFFQIWRASGITSELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQ 189
Cdd:pfam00223  81 AHVVWPHFGQEILNAftDVGAGFPGVQITSGLFQWWRTIGMTTNGQLYAGAIGLLILAALMLFAGWLHYHKFAPKLEWFK 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033    190 DVESMLNHHLAGLLGLGSLSWAGHQVHVSLPINQFLNAGVDPKEIPLPHEFiLNRDLLAQLYPSFAEGATPFFTLNWSKY 269
Cdd:pfam00223 161 NAESMLNHHLAGLFGLGSLAWTGHLIHVAIPESRLLDAGVAAADIPLPHPF-LNPDLMGQLYPSFAAGLGPFFTGNWGAY 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033    270 SEFLTFRGGLDPVTGGLWLTDIAHHHLAIAILFLIAGHMYRTNWGIGHGIKDILEAHKGP--FTGQGHKGLYEILTTSWH 347
Cdd:pfam00223 240 ADILTFKGGLHPQTGSLWLTDIAHHHLAIAVLFIIAGHMYRTNFGIGHSMKEILEAHKGPggFTGEGHKGLYETLNNSWH 319
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033    348 AQLSLNLAMLGSLTIIVAHHMYSMPPYPYLATDYATQLSLFTHHMWIGGFLIVGAAAHAAIFMVRDYDPTNRYNDLLDRV 427
Cdd:pfam00223 320 AQLGLNLAMLGSVTIIVAHHMYALPPYPYIATDYTTQAALFTHHQWIGGFLMVGAFAHGAIFMVRDYDPEVNKNNVLDRV 399
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033    428 LRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPVFAQWIQ----------NTHALAPGVTAP 497
Cdd:pfam00223 400 LEHRDAIISHLSWVCLFLGFHTFGLYVHNDTMRAFGRPEDMFSDTAILLEPVFAQWIQaahgkalygfNLLASAPGSTAP 479
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033    498 GETASTSLTWGGGELVAVGGKVALLPIPLGTADFLVHHIHAFTIHVTVLILLKGVLFARSSRLIPDKANLGFRFPCDGPG 577
Cdd:pfam00223 480 NAGAGVSDVWLPGDAVNVGGKVSLFPIPLGTADFLVHHIIAFGIHVTVLILLKGVLDARSSRLMPDKKDLGFRFPCDGPG 559
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033    578 RGGTCQVSAWDHVFLGLFWMYNAISVVIFHFSWKMQSDVWGSISdqgvvthITGGNFAQSSITINGWLRDFLWAQASQVI 657
Cdd:pfam00223 560 RGGTCQISAWDHVFLGLFWMYNTISWVIFYFHWKMQSDVWGGNV-------ITGGQFAQSSIYINGWLRDFLWAQSSQVI 632
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033    658 QSYGSSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPATQPRALSIIQGRAVGVTHYLLGGIAT 737
Cdd:pfam00223 633 NSYGNSLSVYGLMFLGGHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKLAPLIQPRALSIVQGRAVGVAHFLLGGIVT 712

                  ....*..
gi 7525033    738 TWAFFLA 744
Cdd:pfam00223 713 TWAFFIA 719
 
Name Accession Description Interval E-value
psaA CHL00056
photosystem I P700 chlorophyll a apoprotein A1
1-750 0e+00

photosystem I P700 chlorophyll a apoprotein A1


Pssm-ID: 176996  Cd Length: 750  Bit Score: 1594.39  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033     1 MIIRSPEPEVKILVDRDPIKTSFEEWAKPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQLSI 80
Cdd:CHL00056   1 MIIRSPEPEVKILVDRDPVKTSFEKWAKPGHFSRTLAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQLSI 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033    81 IFLWLSGMYFHGARFSNYEAWLSDPTHIGPSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQIWRASGITSELQLYCTA 160
Cdd:CHL00056  81 IFLWLSGMYFHGARFSNYEAWLSDPTHIKPSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQIWRASGITSELQLYCTA 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033   161 IGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQVHVSLPINQFLNAGVDPKEIPLPHEF 240
Cdd:CHL00056 161 IGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQIHVSLPINQLLDAGVDPKEIPLPHEF 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033   241 ILNRDLLAQLYPSFAEGATPFFTLNWSKYSEFLTFRGGLDPVTGGLWLTDIAHHHLAIAILFLIAGHMYRTNWGIGHGIK 320
Cdd:CHL00056 241 ILNRDLLAQLYPSFAKGLTPFFTLNWSEYSDFLTFRGGLNPVTGGLWLTDIAHHHLAIAVLFLIAGHMYRTNWGIGHSLK 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033   321 DILEAHKGPFTGQGHKGLYEILTTSWHAQLSLNLAMLGSLTIIVAHHMYSMPPYPYLATDYATQLSLFTHHMWIGGFLIV 400
Cdd:CHL00056 321 EILEAHKGPFTGEGHKGLYEILTTSWHAQLALNLAMLGSLTIIVAHHMYSMPPYPYLATDYGTQLSLFTHHMWIGGFLIV 400
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033   401 GAAAHAAIFMVRDYDPTNRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPVF 480
Cdd:CHL00056 401 GAAAHAAIFMVRDYDPTTRYNNLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPIF 480
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033   481 AQWIQNTHALAPGVTAPGETASTSLTWGGGELVAVGGKVALLPIPLGTADFLVHHIHAFTIHVTVLILLKGVLFARSSRL 560
Cdd:CHL00056 481 AQWIQNTHALAPGATAPGATASTSLTWGGGDLVAVGGKVALLPIPLGTADFLVHHIHAFTIHVTVLILLKGVLFARSSRL 560
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033   561 IPDKANLGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNAISVVIFHFSWKMQSDVWGSISDQGVVTHITGGNFAQSSIT 640
Cdd:CHL00056 561 IPDKANLGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNSISVVIFHFSWKMQSDVWGSISDQGVVTHITGGNFAQSSIT 640
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033   641 INGWLRDFLWAQASQVIQSYGSSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPATQPRALSII 720
Cdd:CHL00056 641 INGWLRDFLWAQASQVIQSYGSSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPAIQPRALSIV 720
                        730       740       750
                 ....*....|....*....|....*....|
gi 7525033   721 QGRAVGVTHYLLGGIATTWAFFLARIIAVG 750
Cdd:CHL00056 721 QGRAVGVAHYLLGGIATTWAFFLARIIAVG 750
psaA TIGR01335
photosystem I core protein PsaA; The core proteins of photosystem I are PsaA and PsaB, ...
1-750 0e+00

photosystem I core protein PsaA; The core proteins of photosystem I are PsaA and PsaB, homologous integral membrane proteins that form a heterodimer. The heterodimer binds the electron-donating chlorophyll dimer P700, as well as chlorophyll, phylloquinone, and 4FE-4S electron acceptors. This model describes PsaA only. [Energy metabolism, Photosynthesis]


Pssm-ID: 130402 [Multi-domain]  Cd Length: 752  Bit Score: 1472.88  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033      1 MIIRSPEPE---VKILVDRDPIKTSFEEWAKPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQ 77
Cdd:TIGR01335   1 MTISPPEREqktAKILVDRDPVPTSFEKWAKPGHFSRTLAKGPKTTTWIWNLHADAHDFDSHTSDLEDISRKIFSAHFGQ 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033     78 LSIIFLWLSGMYFHGARFSNYEAWLSDPTHIGPSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQIWRASGITSELQLY 157
Cdd:TIGR01335  81 LSVIFIWLSGMYFHGARFSNYEAWLSDPTHIKPSAQVVWPIVGQEILNGDVGGGFHGIQITSGFFQLWRASGITNELQLY 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033    158 CTAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQVHVSLPINQFLNAGVDPKEIPLP 237
Cdd:TIGR01335 161 VTAIGGLVMAGLMLFAGWFHYHKAAPKLEWFQNVESMLNHHLAGLLGLGSLSWAGHQIHVSLPINKLLDAGVDPKDIPLP 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033    238 HEFILNRDLLAQLYPSFAEGATPFFTLNWSKYSEFLTFRGGLDPVTGGLWLTDIAHHHLAIAILFLIAGHMYRTNWGIGH 317
Cdd:TIGR01335 241 HEFILNRELMAQLYPSFASGLTPFFTLNWGAYSDFLTFRGGLNPVTGGLWLSDIAHHHLAIAVLFIIAGHMYRTNWGIGH 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033    318 GIKDILEAHKGPFTGQGHKGLYEILTTSWHAQLSLNLAMLGSLTIIVAHHMYSMPPYPYLATDYATQLSLFTHHMWIGGF 397
Cdd:TIGR01335 321 SIKEILEAHKGPFTGSGHKGLYEALTTSWHAQLAINLAMLGSLSIIVAHHMYAMPPYPYLATDYPTQLSLFTHHMWIGGF 400
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033    398 LIVGAAAHAAIFMVRDYDPTNRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQ 477
Cdd:TIGR01335 401 LIVGAAAHGAIFMVRDYDPSQNYNNVLDRVIRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMRALGRPQDMFSDTAIQLQ 480
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033    478 PVFAQWIQNTHALAPGVTAPGETASTSLTWgGGELVAVGGKVALLPIPLGTADFLVHHIHAFTIHVTVLILLKGVLFARS 557
Cdd:TIGR01335 481 PVFAQWIQNLHTLAPGNTAPNALATTSYAF-GGEVVAVGGKVAMMPIKLGTADFMVHHIHAFTIHVTVLILLKGVLFARN 559
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033    558 SRLIPDKANLGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNAISVVIFHFSWKMQSDVWGSISDQGVVTHITGGNFAQS 637
Cdd:TIGR01335 560 SRLIPDKANLGFRFPCDGPGRGGTCQVSGWDHVFLGLFWMYNCISVVIFHFSWKMQSDVWGTVSQNGLVSHITGGNFAQS 639
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033    638 SITINGWLRDFLWAQASQVIQSYGSSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPATQPRAL 717
Cdd:TIGR01335 640 AITINGWLRDFLWAQASQVIQSYGSSLSAYGLMFLGAHFIWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPAIQPRAL 719
                         730       740       750
                  ....*....|....*....|....*....|...
gi 7525033    718 SIIQGRAVGVTHYLLGGIATTWAFFLARIIAVG 750
Cdd:TIGR01335 720 SIIQGRAVGVAHYLLGGIATTWAFFLARIISVG 752
PsaA COG5701
Photosystem I reaction center subunit A1, PsaA [Energy production and conversion]; Photosystem ...
1-750 0e+00

Photosystem I reaction center subunit A1, PsaA [Energy production and conversion]; Photosystem I reaction center subunit A1, PsaA is part of the Pathway/BioSystem: Photosystem I


Pssm-ID: 444411  Cd Length: 755  Bit Score: 1367.60  E-value: 0e+00
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033    1 MIIRSPEPE--VKILVDRDPIKTSFEEWAKPGHFSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQL 78
Cdd:COG5701   1 MTISPPEREekVRVPVDNDPVPTSFEKWGKPGHFDRTLAKGPKTTTWIWNLHALAHDFDTHTSDLEEISRKIFSAHFGHL 80
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033   79 SIIFLWLSGMYFHGARFSNYEAWLSDPTHIGPSAQVVWPIVGQEILNGDVGGGFRGIQITSGFFQIWRASGITSELQLYC 158
Cdd:COG5701  81 AVVFIWLSGMFFHGARFSNYTAWLADPTGVKPSAQVVWPIVGQEILNADVGGGFHGIQITSGLFQMWRAWGITNEFQLYC 160
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033  159 TAIGALVFAALMLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQVHVSLPINQFLNAGVDPKEIPLPH 238
Cdd:COG5701 161 TAIGALVMAALMLFAGWFHYHKRAPKLEWFQNVESMLNHHLAGLLGLGSLAWTGHLIHVSLPVNALLDAGVAAADIPLPH 240
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033  239 EFiLNRDLLAQLYPSFAEGATPFFTLNWSKYSEFLTFRGGLDPVTGGLWLTDIAHHHLAIAILFLIAGHMYRTNWGIGHG 318
Cdd:COG5701 241 EF-LNPSLMAQLYPGFASGVGPFFTLNWGAFSDFLTFKGGLNPVTGGLWLTDIAHHHLAIAVLFIIAGHMYRTNWGIGHS 319
                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033  319 IKDILEAHKGP---FTG-QGHKGLYEILTTSWHAQLSLNLAMLGSLTIIVAHHMYSMPPYPYLATDYATQLSLFTHHMWI 394
Cdd:COG5701 320 MKEILEAHKGPpllFTGpEGHKGLYEVLTTSWHAQLAINLAMMGSLSIIVAHHMYAMPPYPYLATDYPTQLSLFTHHMWI 399
                       410       420       430       440       450       460       470       480
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033  395 GGFLIVGAAAHAAIFMVRDYDPTNRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAI 474
Cdd:COG5701 400 GGFLIVGAAAHAAIFMVRDYDPAVNQNNVLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMRALGRPQDMFSDTAI 479
                       490       500       510       520       530       540       550       560
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033  475 QLQPVFAQWIQNTHALAPG-VTAPGETASTSLTWGGGeLVAVGGKVALLPIPLGTADFLVHHIHAFTIHVTVLILLKGVL 553
Cdd:COG5701 480 QLQPVFAQWIQNLHASAPGtATAPNAGGTVSEAFGGD-VVAVGGKVAMMPIPLGTADFMIHHIHAFTIHVTVLILLKGVL 558
                       570       580       590       600       610       620       630       640
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033  554 FARSSRLIPDKANLGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNAISVVIFHFSWKMQSDVWGSISDQGVVTHITGGN 633
Cdd:COG5701 559 FARSSRLIPDKANLGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNSLSVVIFHFSWKMQSDVWGTVNADGSVNHITGGN 638
                       650       660       670       680       690       700       710       720
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033  634 FAQSSITINGWLRDFLWAQASQVIQSYGSSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPATQ 713
Cdd:COG5701 639 FAQSSITINGWLRDFLWAQSSQVINSYGSALSAYGLMFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPAIQ 718
                       730       740       750
                ....*....|....*....|....*....|....*..
gi 7525033  714 PRALSIIQGRAVGVTHYLLGGIATTWAFFLARIIAVG 750
Cdd:COG5701 719 PRALSITQGRAVGVAHYLLGGIATTWAFFLARLIALG 755
PsaA_PsaB pfam00223
Photosystem I psaA/psaB protein;
32-744 0e+00

Photosystem I psaA/psaB protein;


Pssm-ID: 459719  Cd Length: 719  Bit Score: 1252.37  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033     32 FSRTIAKGPDTTTWIWNLHADAHDFDSHTSDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSDPTHIGPS 111
Cdd:pfam00223   1 FSQDLAQGPKTTRWIWNLHATAHDFESHDGDTEELSRKIFSAHFGHLAIIFLWLSGNLFHGAWFSNFEAWLADPLHVKPI 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033    112 AQVVWPIVGQEILNG--DVGGGFRGIQITSGFFQIWRASGITSELQLYCTAIGALVFAALMLFAGWFHYHKAAPKLAWFQ 189
Cdd:pfam00223  81 AHVVWPHFGQEILNAftDVGAGFPGVQITSGLFQWWRTIGMTTNGQLYAGAIGLLILAALMLFAGWLHYHKFAPKLEWFK 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033    190 DVESMLNHHLAGLLGLGSLSWAGHQVHVSLPINQFLNAGVDPKEIPLPHEFiLNRDLLAQLYPSFAEGATPFFTLNWSKY 269
Cdd:pfam00223 161 NAESMLNHHLAGLFGLGSLAWTGHLIHVAIPESRLLDAGVAAADIPLPHPF-LNPDLMGQLYPSFAAGLGPFFTGNWGAY 239
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033    270 SEFLTFRGGLDPVTGGLWLTDIAHHHLAIAILFLIAGHMYRTNWGIGHGIKDILEAHKGP--FTGQGHKGLYEILTTSWH 347
Cdd:pfam00223 240 ADILTFKGGLHPQTGSLWLTDIAHHHLAIAVLFIIAGHMYRTNFGIGHSMKEILEAHKGPggFTGEGHKGLYETLNNSWH 319
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033    348 AQLSLNLAMLGSLTIIVAHHMYSMPPYPYLATDYATQLSLFTHHMWIGGFLIVGAAAHAAIFMVRDYDPTNRYNDLLDRV 427
Cdd:pfam00223 320 AQLGLNLAMLGSVTIIVAHHMYALPPYPYIATDYTTQAALFTHHQWIGGFLMVGAFAHGAIFMVRDYDPEVNKNNVLDRV 399
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033    428 LRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPVFAQWIQ----------NTHALAPGVTAP 497
Cdd:pfam00223 400 LEHRDAIISHLSWVCLFLGFHTFGLYVHNDTMRAFGRPEDMFSDTAILLEPVFAQWIQaahgkalygfNLLASAPGSTAP 479
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033    498 GETASTSLTWGGGELVAVGGKVALLPIPLGTADFLVHHIHAFTIHVTVLILLKGVLFARSSRLIPDKANLGFRFPCDGPG 577
Cdd:pfam00223 480 NAGAGVSDVWLPGDAVNVGGKVSLFPIPLGTADFLVHHIIAFGIHVTVLILLKGVLDARSSRLMPDKKDLGFRFPCDGPG 559
                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033    578 RGGTCQVSAWDHVFLGLFWMYNAISVVIFHFSWKMQSDVWGSISdqgvvthITGGNFAQSSITINGWLRDFLWAQASQVI 657
Cdd:pfam00223 560 RGGTCQISAWDHVFLGLFWMYNTISWVIFYFHWKMQSDVWGGNV-------ITGGQFAQSSIYINGWLRDFLWAQSSQVI 632
                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033    658 QSYGSSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPATQPRALSIIQGRAVGVTHYLLGGIAT 737
Cdd:pfam00223 633 NSYGNSLSVYGLMFLGGHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKLAPLIQPRALSIVQGRAVGVAHFLLGGIVT 712

                  ....*..
gi 7525033    738 TWAFFLA 744
Cdd:pfam00223 713 TWAFFIA 719
psaB CHL00054
photosystem I P700 chlorophyll a apoprotein A2
32-744 0e+00

photosystem I P700 chlorophyll a apoprotein A2


Pssm-ID: 176995  Cd Length: 734  Bit Score: 664.50  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033    32 FSRTIAKGPdTTTWIWNLHADAHDFDSHTSDLEE-ISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSDPTHIGP 110
Cdd:CHL00054   8 FSQGLAQDP-TTRRIWFGIATAHDFESHDDITEErLYQKIFASHFGQLAIIFLWTSGNLFHVAWQGNFEAWVQDPLHVRP 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033   111 SAQVVW-PIVGQEILNGDVGGGFRG-IQI-TSGFFQIWRASGITSELQLYCTAIGALVFAALMLFAGWFHYH-KAAPKLA 186
Cdd:CHL00054  87 IAHAIWdPHFGQPAVEAFTRGGALGpVNIaYSGVYQWWYTIGLRTNEDLYTGALFLLFLSALSLIAGWLHLQpKWKPSVS 166
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033   187 WFQDVESMLNHHLAGLLGLGSLSWAGHQVHVSLPINQFLNAGVDPKEIPLPHefilnrdllaqlypsfAEGATPFFTLNW 266
Cdd:CHL00054 167 WFKNAESRLNHHLSGLFGVSSLAWTGHLVHVAIPESRGEHVRWNNFLDVLPH----------------PQGLGPLFTGQW 230
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033   267 SKYSE------------------FLTFRGGLDPVTGGLWLTDIAHHHLAIAILFLIAGHMYRTNWGIGHGIKDILEAHKG 328
Cdd:CHL00054 231 NLYAQnpdssshlfgtsqgagtaILTFLGGFHPQTQSLWLTDIAHHHLAIAVVFLIAGHMYRTNFGIGHSMKDILEAHIP 310
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033   329 P--FTGQGHKGLYEILTTSWHAQLSLNLAMLGSLTIIVAHHMYSMPPYPYLATDYATQLSLFTHHMWIGGFLIVGAAAHA 406
Cdd:CHL00054 311 PggRLGRGHKGLYDTINNSLHFQLGLALASLGVITSLVAQHMYSLPAYAFIAQDFTTQAALYTHHQYIAGFIMTGAFAHG 390
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033   407 AIFMVRDYDPTNRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMfsdtaIQLQPVFAQWIQN 486
Cdd:CHL00054 391 AIFFIRDYNPEQNEDNVLARMLDHKEAIISHLSWASLFLGFHTLGLYVHNDVMLAFGTPEKQ-----ILIEPIFAQWIQS 465
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033   487 THA--------LAPGVTAPGETASTSLtWGGGELVAVGGKVALLPIPLGTADFLVHHIHAFTIHVTVLILLKGVLFARSS 558
Cdd:CHL00054 466 AHGktsygfdvLLSSTNSPAFNAGRSI-WLPGWLNAINENSNSLFLTIGPGDFLVHHAIALGLHTTTLILVKGALDARGS 544
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033   559 RLIPDKANLGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNAISVVIFHFSWKMQSdVWgsisdQGVVthitgGNFAQSS 638
Cdd:CHL00054 545 KLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYLAVFWMLNTIGWVTFYWHWKHIT-LW-----QGNV-----SQFNESS 613
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033   639 ITINGWLRDFLWAQASQVIQSYG----SSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPATQ- 713
Cdd:CHL00054 614 TYLMGWLRDYLWLNSSQLINGYNpfgmNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLAWAHERTPLANLIRw 693
                        730       740       750
                 ....*....|....*....|....*....|....
gi 7525033   714 ---PRALSIIQGRAVGVTHYLLGGIATTWAFFLA 744
Cdd:CHL00054 694 rdkPVALSIVQARLVGLAHFSVGYIFTYAAFLIA 727
PsaB COG5702
Photosystem I reaction center subunit A2, PsaB [Energy production and conversion]; Photosystem ...
32-744 0e+00

Photosystem I reaction center subunit A2, PsaB [Energy production and conversion]; Photosystem I reaction center subunit A2, PsaB is part of the Pathway/BioSystem: Photosystem I


Pssm-ID: 444412  Cd Length: 741  Bit Score: 641.93  E-value: 0e+00
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033   32 FSRTIAKGPdTTTWIWNLHADAHDFDSHTSDLEE-ISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSDPTHIGP 110
Cdd:COG5702   8 FSQDLAQDP-TTRRIWYGIATAHDFESHDGMTEEnLYQKIFATHFGHLAIIFLWSSGNLFHVAWQGNFEQWIQDPLNVRP 86
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033  111 SAQVVW-PIVGQEILNG-DVGGGFRGIQIT-SGFFQIWRASGITSELQLYCTAIGALVFAALMLFAGWFHYH-KAAPKLA 186
Cdd:COG5702  87 IAHAIWdPHFGKPAIEAfTQAGASNPVNICySGLYHWWYTIGMRTNTDLYQGSIFLLLLAAVMLFAGWLHLQpKFRPSLA 166
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033  187 WFQDVESMLNHHLAGLLGLGSLSWAGHQVHVSLPINQFLNAGVDPKEIPLPHefilnrdllaqlypsfAEGATPFFTLNW 266
Cdd:COG5702 167 WFKNAESRLNHHLAGLFGVSSLAWTGHLVHVAIPESRGQHVGWDNFLSTLPH----------------PAGLAPFFTGNW 230
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033  267 SKYSE------------------FLTFRGGLDPVTGGLWLTDIAHHHLAIAILFLIAGHMYRTNWGIGHGIKDILEAHKG 328
Cdd:COG5702 231 GVYAQnpdtaghafgtsqgagtaILTFLGGFHPQTESLWLTDIAHHHLAIAVIFIIAGHMYRTNFGIGHSIKEILEAHQG 310
                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033  329 P------FTGQGHKGLYEILTTSWHAQLSLNLAMLGSLTIIVAHHMYSMPPYPYLATDYATQLSLFTHHMWIGGFLIVGA 402
Cdd:COG5702 311 PgrsgffKTGLGHKGLYDTINNSLHFQLGLALACLGVITSLVAQHMYALPPYAFIAQDYTTQAALYTHHQYIAGFLMIGA 390
                       410       420       430       440       450       460       470       480
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033  403 AAHAAIFMVRDYDPTNRYNDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMfsdtaIQLQPVFAQ 482
Cdd:COG5702 391 FAHGAIFFVRDYDPEANKDNVLARMLEHKEAIISHLSWVSLFLGFHTLGLYVHNDVVVAFGTPEKQ-----ILIEPVFAQ 465
                       490       500       510       520       530       540       550       560
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033  483 WIQNTHALA----------PGVTAPGETASTSLTWGGGELVAVGGKVALLPIPLGTADFLVHHIHAFTIHVTVLILLKGV 552
Cdd:COG5702 466 FIQAAHGKVlygidtllsnPDSVASTAWPNYGNVWLPGWLEAVNNGANSLFLTIGPGDFLVHHAIALGLHTTTLILVKGA 545
                       570       580       590       600       610       620       630       640
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033  553 LFARSSRLIPDKANLGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNAISVVIFHFSWKMQSdVWGSISDQgvvthitgg 632
Cdd:COG5702 546 LDARGSKLMPDKKDFGYAFPCDGPGRGGTCDISAWDSFYLATFWMLNTIGWVTFYWHWKHLS-IWSGNVAQ--------- 615
                       650       660       670       680       690       700       710       720
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7525033  633 nFAQSSITINGWLRDFLWAQASQVIQSYG----SSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKV 708
Cdd:COG5702 616 -FNESSTYLMGWFRDYLWANSAQLINGYSpfgtNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELIETLVWAHERTPL 694
                       730       740       750       760
                ....*....|....*....|....*....|....*....|
gi 7525033  709 A----PATQPRALSIIQGRAVGVTHYLLGGIATTWAFFLA 744
Cdd:COG5702 695 AnlvrWKDKPVALSIVQARLVGLTHFTVGYIVTYAAFLIA 734
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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