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Conserved domains on  [gi|6981200|ref|NP_036943|]
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lactadherin isoform 2 precursor [Rattus norvegicus]

Protein Classification

EGF_CA and FA58C domain-containing protein( domain architecture ID 11076406)

EGF_CA and FA58C domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FA58C cd00057
Coagulation factor 5/8 C-terminal domain, discoidin domain; Cell surface-attached ...
 274-426 1.21e-58

Coagulation factor 5/8 C-terminal domain, discoidin domain; Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.


:

Pssm-ID: 238014 [Multi-domain]  Cd Length: 143  Bit Score: 188.33  E-value: 1.21e-58
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6981200  274 EPLGLkNNTIPDSQITASSSYKTwnlrafGWYPHLGRLDnqgKINAWTAQSNSAKEWLQVDLGTQKKVTGIITQGARDFG 353
Cdd:cd00057   1 EPLGM-ESGLADDQITASSSYSS------GWEASRARLN---SDNAWTPAVNDPPQWLQVDLGKTRRVTGIQTQGRKGGG 70

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 6981200  354 HIQYVASYKVAHSDDGVQWTVYEEQGTSKVFQGNLDNNSHKKNIFEKPFMARYVRVLPLSWHNRITLRLELLG 426
Cdd:cd00057  71 SSEWVTSYKVQYSLDGETWTTYKDKGEEKVFTGNSDGSTPVTNDFPPPIVARYIRILPTTWNGNISLRLELYG 143
FA58C cd00057
Coagulation factor 5/8 C-terminal domain, discoidin domain; Cell surface-attached ...
 113-266 6.49e-54

Coagulation factor 5/8 C-terminal domain, discoidin domain; Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.


:

Pssm-ID: 238014 [Multi-domain]  Cd Length: 143  Bit Score: 176.00  E-value: 6.49e-54
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6981200  113 TKLGLEGGAiADSQISASSVYMGfmglqRWGPELARLYRTgivNAWTASSYDSKPWIQVDFLRKMRVSGVMTQGASRAGR 192
Cdd:cd00057   1 EPLGMESGL-ADDQITASSSYSS-----GWEASRARLNSD---NAWTPAVNDPPQWLQVDLGKTRRVTGIQTQGRKGGGS 71

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 6981200  193 AEYLKTFKVAYSLDGRRFEFIQDesGTGDKEFMGNQDNNSLKINMFNPTLEAQYIRLYPVSCHRGCTLRFELLG 266
Cdd:cd00057  72 SEWVTSYKVQYSLDGETWTTYKD--KGEEKVFTGNSDGSTPVTNDFPPPIVARYIRILPTTWNGNISLRLELYG 143
EGF pfam00008
EGF-like domain; There is no clear separation between noise and signal. pfam00053 is very ...
 68-106 7.97e-06

EGF-like domain; There is no clear separation between noise and signal. pfam00053 is very similar, but has 8 instead of 6 conserved cysteines. Includes some cytokine receptors. The EGF domain misses the N-terminus regions of the Ca2+ binding EGF domains (this is the main reason of discrepancy between swiss-prot domain start/end and Pfam). The family is hard to model due to many similar but different sub-types of EGF domains. Pfam certainly misses a number of EGF domains.


:

Pssm-ID: 394967  Cd Length: 31  Bit Score: 42.37  E-value: 7.97e-06
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 6981200     68 CSPNPCFHDAKCLVTEDTqrgdifteYICQCPVGYSGIH 106
Cdd:pfam00008   1 CAPNPCSNGGTCVDTPGG--------YTCICPEGYTGKR 31
EGF pfam00008
EGF-like domain; There is no clear separation between noise and signal. pfam00053 is very ...
 28-57 7.96e-04

EGF-like domain; There is no clear separation between noise and signal. pfam00053 is very similar, but has 8 instead of 6 conserved cysteines. Includes some cytokine receptors. The EGF domain misses the N-terminus regions of the Ca2+ binding EGF domains (this is the main reason of discrepancy between swiss-prot domain start/end and Pfam). The family is hard to model due to many similar but different sub-types of EGF domains. Pfam certainly misses a number of EGF domains.


:

Pssm-ID: 394967  Cd Length: 31  Bit Score: 36.59  E-value: 7.96e-04
                          10        20        30
                  ....*....|....*....|....*....|
gi 6981200     28 CDSSLCLNGGTCLMGQdNDIYCLCPEGFTG 57
Cdd:pfam00008   1 CAPNPCSNGGTCVDTP-GGYTCICPEGYTG 29
 
Name Accession Description Interval E-value
FA58C cd00057
Coagulation factor 5/8 C-terminal domain, discoidin domain; Cell surface-attached ...
 274-426 1.21e-58

Coagulation factor 5/8 C-terminal domain, discoidin domain; Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.


Pssm-ID: 238014 [Multi-domain]  Cd Length: 143  Bit Score: 188.33  E-value: 1.21e-58
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6981200  274 EPLGLkNNTIPDSQITASSSYKTwnlrafGWYPHLGRLDnqgKINAWTAQSNSAKEWLQVDLGTQKKVTGIITQGARDFG 353
Cdd:cd00057   1 EPLGM-ESGLADDQITASSSYSS------GWEASRARLN---SDNAWTPAVNDPPQWLQVDLGKTRRVTGIQTQGRKGGG 70

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 6981200  354 HIQYVASYKVAHSDDGVQWTVYEEQGTSKVFQGNLDNNSHKKNIFEKPFMARYVRVLPLSWHNRITLRLELLG 426
Cdd:cd00057  71 SSEWVTSYKVQYSLDGETWTTYKDKGEEKVFTGNSDGSTPVTNDFPPPIVARYIRILPTTWNGNISLRLELYG 143
FA58C cd00057
Coagulation factor 5/8 C-terminal domain, discoidin domain; Cell surface-attached ...
 113-266 6.49e-54

Coagulation factor 5/8 C-terminal domain, discoidin domain; Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.


Pssm-ID: 238014 [Multi-domain]  Cd Length: 143  Bit Score: 176.00  E-value: 6.49e-54
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6981200  113 TKLGLEGGAiADSQISASSVYMGfmglqRWGPELARLYRTgivNAWTASSYDSKPWIQVDFLRKMRVSGVMTQGASRAGR 192
Cdd:cd00057   1 EPLGMESGL-ADDQITASSSYSS-----GWEASRARLNSD---NAWTPAVNDPPQWLQVDLGKTRRVTGIQTQGRKGGGS 71

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 6981200  193 AEYLKTFKVAYSLDGRRFEFIQDesGTGDKEFMGNQDNNSLKINMFNPTLEAQYIRLYPVSCHRGCTLRFELLG 266
Cdd:cd00057  72 SEWVTSYKVQYSLDGETWTTYKD--KGEEKVFTGNSDGSTPVTNDFPPPIVARYIRILPTTWNGNISLRLELYG 143
FA58C smart00231
Coagulation factor 5/8 C-terminal domain, discoidin domain; Cell surface-attached ...
 271-427 7.47e-42

Coagulation factor 5/8 C-terminal domain, discoidin domain; Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.


Pssm-ID: 214572  Cd Length: 139  Bit Score: 144.57  E-value: 7.47e-42
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6981200     271 GCSEPLGLKNntipDSQITASSSYktwnlrafgWYPHLGRLdNQGKINAWTAQSNSAKEWLQVDLGTQKKVTGIITQGAR 350
Cdd:smart00231   1 PCNEPLGLES----DSQITASSSY---------WAAKIARL-NGGSDGGWCPAKNDLPPWIQVDLGRLRTVTGVITGRRH 66

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 6981200     351 DFGHIQYvasYKVAHSDDGVQWTVYEEqGTSKVFQGNLDNNSHKKNIFEKPFMARYVRVLPLSWHNRITLRLELLGC 427
Cdd:smart00231  67 GNGDWVT---YKLEYSDDGVNWTTYKD-GNSKVFPGNSDAGTVVLNDFPPPIVARYVRILPTGWNGNIILRVELLGC 139
FA58C smart00231
Coagulation factor 5/8 C-terminal domain, discoidin domain; Cell surface-attached ...
 110-267 1.44e-39

Coagulation factor 5/8 C-terminal domain, discoidin domain; Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.


Pssm-ID: 214572  Cd Length: 139  Bit Score: 138.41  E-value: 1.44e-39
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6981200     110 GCSTKLGLEGgaiaDSQISASSVYmgfmglqrWGPELARLYRtGIVNAWTASSYDSKPWIQVDFLRKMRVSGVMTQGasR 189
Cdd:smart00231   1 PCNEPLGLES----DSQITASSSY--------WAAKIARLNG-GSDGGWCPAKNDLPPWIQVDLGRLRTVTGVITGR--R 65

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 6981200     190 AGRAEYLKTFKVaYSLDGRRFEFIQDesgTGDKEFMGNQDNNSLKINMFNPTLEAQYIRLYPVSCHRGCTLRFELLGC 267
Cdd:smart00231  66 HGNGDWVTYKLE-YSDDGVNWTTYKD---GNSKVFPGNSDAGTVVLNDFPPPIVARYVRILPTGWNGNIILRVELLGC 139
F5_F8_type_C pfam00754
F5/8 type C domain; This domain is also known as the discoidin (DS) domain family.
 287-424 2.40e-37

F5/8 type C domain; This domain is also known as the discoidin (DS) domain family.


Pssm-ID: 459925 [Multi-domain]  Cd Length: 127  Bit Score: 132.19  E-value: 2.40e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6981200    287 QITASSSYktwnlraFGWYPHLGRLDNQGKiNAWTAQSNSAKEWLQVDLGTQKKVTGIITQGARDfGHIQYVASYKVAHS 366
Cdd:pfam00754   1 QITASSSY-------SGEGPAAAALDGDPN-TAWSAWSGDDPQWIQVDLGKPKKITGVVTQGRQD-GSNGYVTSYKIEYS 71

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 6981200    367 DDGVQWTVYEEQGTskvfQGNLDNNSHKKNIFEKPFMARYVRVLPLSWH--NRITLRLEL 424
Cdd:pfam00754  72 LDGENWTTVKDEKI----PGNNDNNTPVTNTFDPPIKARYVRIVPTSWNggNGIALRAEL 127
F5_F8_type_C pfam00754
F5/8 type C domain; This domain is also known as the discoidin (DS) domain family.
 126-264 9.19e-28

F5/8 type C domain; This domain is also known as the discoidin (DS) domain family.


Pssm-ID: 459925 [Multi-domain]  Cd Length: 127  Bit Score: 106.76  E-value: 9.19e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6981200    126 QISASSVYMGFmglqrwGPELARLyrTGIVN-AWTASSYDSKPWIQVDFLRKMRVSGVMTQGAsRAGRAEYLKTFKVAYS 204
Cdd:pfam00754   1 QITASSSYSGE------GPAAAAL--DGDPNtAWSAWSGDDPQWIQVDLGKPKKITGVVTQGR-QDGSNGYVTSYKIEYS 71

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 6981200    205 LDGRRFEFIQDEsgtgdkEFMGNQDNNSLKINMFNPTLEAQYIRLYPVS--CHRGCTLRFEL 264
Cdd:pfam00754  72 LDGENWTTVKDE------KIPGNNDNNTPVTNTFDPPIKARYVRIVPTSwnGGNGIALRAEL 127
EGF pfam00008
EGF-like domain; There is no clear separation between noise and signal. pfam00053 is very ...
 68-106 7.97e-06

EGF-like domain; There is no clear separation between noise and signal. pfam00053 is very similar, but has 8 instead of 6 conserved cysteines. Includes some cytokine receptors. The EGF domain misses the N-terminus regions of the Ca2+ binding EGF domains (this is the main reason of discrepancy between swiss-prot domain start/end and Pfam). The family is hard to model due to many similar but different sub-types of EGF domains. Pfam certainly misses a number of EGF domains.


Pssm-ID: 394967  Cd Length: 31  Bit Score: 42.37  E-value: 7.97e-06
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 6981200     68 CSPNPCFHDAKCLVTEDTqrgdifteYICQCPVGYSGIH 106
Cdd:pfam00008   1 CAPNPCSNGGTCVDTPGG--------YTCICPEGYTGKR 31
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
 69-108 3.55e-04

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 38.00  E-value: 3.55e-04
                        10        20        30        40
                ....*....|....*....|....*....|....*....|
gi 6981200   69 SPNPCFHDAKCLVTEDTqrgdifteYICQCPVGYSGIHCE 108
Cdd:cd00054   7 SGNPCQNGGTCVNTVGS--------YRCSCPPGYTGRNCE 38
EGF pfam00008
EGF-like domain; There is no clear separation between noise and signal. pfam00053 is very ...
 28-57 7.96e-04

EGF-like domain; There is no clear separation between noise and signal. pfam00053 is very similar, but has 8 instead of 6 conserved cysteines. Includes some cytokine receptors. The EGF domain misses the N-terminus regions of the Ca2+ binding EGF domains (this is the main reason of discrepancy between swiss-prot domain start/end and Pfam). The family is hard to model due to many similar but different sub-types of EGF domains. Pfam certainly misses a number of EGF domains.


Pssm-ID: 394967  Cd Length: 31  Bit Score: 36.59  E-value: 7.96e-04
                          10        20        30
                  ....*....|....*....|....*....|
gi 6981200     28 CDSSLCLNGGTCLMGQdNDIYCLCPEGFTG 57
Cdd:pfam00008   1 CAPNPCSNGGTCVDTP-GGYTCICPEGYTG 29
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
 26-60 9.68e-04

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 36.46  E-value: 9.68e-04
                        10        20        30
                ....*....|....*....|....*....|....*.
gi 6981200   26 DFCDS-SLCLNGGTCLMGqDNDIYCLCPEGFTGLVC 60
Cdd:cd00054   3 DECASgNPCQNGGTCVNT-VGSYRCSCPPGYTGRNC 37
 
Name Accession Description Interval E-value
FA58C cd00057
Coagulation factor 5/8 C-terminal domain, discoidin domain; Cell surface-attached ...
 274-426 1.21e-58

Coagulation factor 5/8 C-terminal domain, discoidin domain; Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.


Pssm-ID: 238014 [Multi-domain]  Cd Length: 143  Bit Score: 188.33  E-value: 1.21e-58
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6981200  274 EPLGLkNNTIPDSQITASSSYKTwnlrafGWYPHLGRLDnqgKINAWTAQSNSAKEWLQVDLGTQKKVTGIITQGARDFG 353
Cdd:cd00057   1 EPLGM-ESGLADDQITASSSYSS------GWEASRARLN---SDNAWTPAVNDPPQWLQVDLGKTRRVTGIQTQGRKGGG 70

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 6981200  354 HIQYVASYKVAHSDDGVQWTVYEEQGTSKVFQGNLDNNSHKKNIFEKPFMARYVRVLPLSWHNRITLRLELLG 426
Cdd:cd00057  71 SSEWVTSYKVQYSLDGETWTTYKDKGEEKVFTGNSDGSTPVTNDFPPPIVARYIRILPTTWNGNISLRLELYG 143
FA58C cd00057
Coagulation factor 5/8 C-terminal domain, discoidin domain; Cell surface-attached ...
 113-266 6.49e-54

Coagulation factor 5/8 C-terminal domain, discoidin domain; Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.


Pssm-ID: 238014 [Multi-domain]  Cd Length: 143  Bit Score: 176.00  E-value: 6.49e-54
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6981200  113 TKLGLEGGAiADSQISASSVYMGfmglqRWGPELARLYRTgivNAWTASSYDSKPWIQVDFLRKMRVSGVMTQGASRAGR 192
Cdd:cd00057   1 EPLGMESGL-ADDQITASSSYSS-----GWEASRARLNSD---NAWTPAVNDPPQWLQVDLGKTRRVTGIQTQGRKGGGS 71

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 6981200  193 AEYLKTFKVAYSLDGRRFEFIQDesGTGDKEFMGNQDNNSLKINMFNPTLEAQYIRLYPVSCHRGCTLRFELLG 266
Cdd:cd00057  72 SEWVTSYKVQYSLDGETWTTYKD--KGEEKVFTGNSDGSTPVTNDFPPPIVARYIRILPTTWNGNISLRLELYG 143
FA58C smart00231
Coagulation factor 5/8 C-terminal domain, discoidin domain; Cell surface-attached ...
 271-427 7.47e-42

Coagulation factor 5/8 C-terminal domain, discoidin domain; Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.


Pssm-ID: 214572  Cd Length: 139  Bit Score: 144.57  E-value: 7.47e-42
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6981200     271 GCSEPLGLKNntipDSQITASSSYktwnlrafgWYPHLGRLdNQGKINAWTAQSNSAKEWLQVDLGTQKKVTGIITQGAR 350
Cdd:smart00231   1 PCNEPLGLES----DSQITASSSY---------WAAKIARL-NGGSDGGWCPAKNDLPPWIQVDLGRLRTVTGVITGRRH 66

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 6981200     351 DFGHIQYvasYKVAHSDDGVQWTVYEEqGTSKVFQGNLDNNSHKKNIFEKPFMARYVRVLPLSWHNRITLRLELLGC 427
Cdd:smart00231  67 GNGDWVT---YKLEYSDDGVNWTTYKD-GNSKVFPGNSDAGTVVLNDFPPPIVARYVRILPTGWNGNIILRVELLGC 139
FA58C smart00231
Coagulation factor 5/8 C-terminal domain, discoidin domain; Cell surface-attached ...
 110-267 1.44e-39

Coagulation factor 5/8 C-terminal domain, discoidin domain; Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.


Pssm-ID: 214572  Cd Length: 139  Bit Score: 138.41  E-value: 1.44e-39
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6981200     110 GCSTKLGLEGgaiaDSQISASSVYmgfmglqrWGPELARLYRtGIVNAWTASSYDSKPWIQVDFLRKMRVSGVMTQGasR 189
Cdd:smart00231   1 PCNEPLGLES----DSQITASSSY--------WAAKIARLNG-GSDGGWCPAKNDLPPWIQVDLGRLRTVTGVITGR--R 65

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 6981200     190 AGRAEYLKTFKVaYSLDGRRFEFIQDesgTGDKEFMGNQDNNSLKINMFNPTLEAQYIRLYPVSCHRGCTLRFELLGC 267
Cdd:smart00231  66 HGNGDWVTYKLE-YSDDGVNWTTYKD---GNSKVFPGNSDAGTVVLNDFPPPIVARYVRILPTGWNGNIILRVELLGC 139
F5_F8_type_C pfam00754
F5/8 type C domain; This domain is also known as the discoidin (DS) domain family.
 287-424 2.40e-37

F5/8 type C domain; This domain is also known as the discoidin (DS) domain family.


Pssm-ID: 459925 [Multi-domain]  Cd Length: 127  Bit Score: 132.19  E-value: 2.40e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6981200    287 QITASSSYktwnlraFGWYPHLGRLDNQGKiNAWTAQSNSAKEWLQVDLGTQKKVTGIITQGARDfGHIQYVASYKVAHS 366
Cdd:pfam00754   1 QITASSSY-------SGEGPAAAALDGDPN-TAWSAWSGDDPQWIQVDLGKPKKITGVVTQGRQD-GSNGYVTSYKIEYS 71

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 6981200    367 DDGVQWTVYEEQGTskvfQGNLDNNSHKKNIFEKPFMARYVRVLPLSWH--NRITLRLEL 424
Cdd:pfam00754  72 LDGENWTTVKDEKI----PGNNDNNTPVTNTFDPPIKARYVRIVPTSWNggNGIALRAEL 127
F5_F8_type_C pfam00754
F5/8 type C domain; This domain is also known as the discoidin (DS) domain family.
 126-264 9.19e-28

F5/8 type C domain; This domain is also known as the discoidin (DS) domain family.


Pssm-ID: 459925 [Multi-domain]  Cd Length: 127  Bit Score: 106.76  E-value: 9.19e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6981200    126 QISASSVYMGFmglqrwGPELARLyrTGIVN-AWTASSYDSKPWIQVDFLRKMRVSGVMTQGAsRAGRAEYLKTFKVAYS 204
Cdd:pfam00754   1 QITASSSYSGE------GPAAAAL--DGDPNtAWSAWSGDDPQWIQVDLGKPKKITGVVTQGR-QDGSNGYVTSYKIEYS 71

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 6981200    205 LDGRRFEFIQDEsgtgdkEFMGNQDNNSLKINMFNPTLEAQYIRLYPVS--CHRGCTLRFEL 264
Cdd:pfam00754  72 LDGENWTTVKDE------KIPGNNDNNTPVTNTFDPPIKARYVRIVPTSwnGGNGIALRAEL 127
EGF pfam00008
EGF-like domain; There is no clear separation between noise and signal. pfam00053 is very ...
 68-106 7.97e-06

EGF-like domain; There is no clear separation between noise and signal. pfam00053 is very similar, but has 8 instead of 6 conserved cysteines. Includes some cytokine receptors. The EGF domain misses the N-terminus regions of the Ca2+ binding EGF domains (this is the main reason of discrepancy between swiss-prot domain start/end and Pfam). The family is hard to model due to many similar but different sub-types of EGF domains. Pfam certainly misses a number of EGF domains.


Pssm-ID: 394967  Cd Length: 31  Bit Score: 42.37  E-value: 7.97e-06
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 6981200     68 CSPNPCFHDAKCLVTEDTqrgdifteYICQCPVGYSGIH 106
Cdd:pfam00008   1 CAPNPCSNGGTCVDTPGG--------YTCICPEGYTGKR 31
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
 69-108 3.55e-04

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 38.00  E-value: 3.55e-04
                        10        20        30        40
                ....*....|....*....|....*....|....*....|
gi 6981200   69 SPNPCFHDAKCLVTEDTqrgdifteYICQCPVGYSGIHCE 108
Cdd:cd00054   7 SGNPCQNGGTCVNTVGS--------YRCSCPPGYTGRNCE 38
EGF pfam00008
EGF-like domain; There is no clear separation between noise and signal. pfam00053 is very ...
 28-57 7.96e-04

EGF-like domain; There is no clear separation between noise and signal. pfam00053 is very similar, but has 8 instead of 6 conserved cysteines. Includes some cytokine receptors. The EGF domain misses the N-terminus regions of the Ca2+ binding EGF domains (this is the main reason of discrepancy between swiss-prot domain start/end and Pfam). The family is hard to model due to many similar but different sub-types of EGF domains. Pfam certainly misses a number of EGF domains.


Pssm-ID: 394967  Cd Length: 31  Bit Score: 36.59  E-value: 7.96e-04
                          10        20        30
                  ....*....|....*....|....*....|
gi 6981200     28 CDSSLCLNGGTCLMGQdNDIYCLCPEGFTG 57
Cdd:pfam00008   1 CAPNPCSNGGTCVDTP-GGYTCICPEGYTG 29
EGF_CA cd00054
Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular ...
 26-60 9.68e-04

Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.


Pssm-ID: 238011  Cd Length: 38  Bit Score: 36.46  E-value: 9.68e-04
                        10        20        30
                ....*....|....*....|....*....|....*.
gi 6981200   26 DFCDS-SLCLNGGTCLMGqDNDIYCLCPEGFTGLVC 60
Cdd:cd00054   3 DECASgNPCQNGGTCVNT-VGSYRCSCPPGYTGRNC 37
EGF cd00053
Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large ...
 67-108 5.99e-03

Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.


Pssm-ID: 238010  Cd Length: 36  Bit Score: 34.37  E-value: 5.99e-03
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....
gi 6981200   67 PCS-PNPCFHDAKCLVTEDTqrgdifteYICQCPVGYSG-IHCE 108
Cdd:cd00053   1 ECAaSNPCSNGGTCVNTPGS--------YRCVCPPGYTGdRSCE 36
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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