NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|6678395|ref|NP_033433|]
View 

spermatid nuclear transition protein 1 [Mus musculus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
TP1 super family cl15500
Nuclear transition protein 1;
1-51 1.01e-08

Nuclear transition protein 1;


The actual alignment was detected with superfamily member pfam02079:

Pssm-ID: 460439  Cd Length: 51  Bit Score: 45.47  E-value: 1.01e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 6678395     1 MSTSRKLKTHGMRRGKNRAPHKGVKRGGSKRKYRKSVLKSRKRGDDASRNY 51
Cdd:pfam02079  1 MSSRKKKKHGGMRGGKNAAHHGGKKGGGKKKKRKGGLKKRKKCCDAANNNR 51
 
Name Accession Description Interval E-value
TP1 pfam02079
Nuclear transition protein 1;
1-51 1.01e-08

Nuclear transition protein 1;


Pssm-ID: 460439  Cd Length: 51  Bit Score: 45.47  E-value: 1.01e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 6678395     1 MSTSRKLKTHGMRRGKNRAPHKGVKRGGSKRKYRKSVLKSRKRGDDASRNY 51
Cdd:pfam02079  1 MSSRKKKKHGGMRGGKNAAHHGGKKGGGKKKKRKGGLKKRKKCCDAANNNR 51
 
Name Accession Description Interval E-value
TP1 pfam02079
Nuclear transition protein 1;
1-51 1.01e-08

Nuclear transition protein 1;


Pssm-ID: 460439  Cd Length: 51  Bit Score: 45.47  E-value: 1.01e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 6678395     1 MSTSRKLKTHGMRRGKNRAPHKGVKRGGSKRKYRKSVLKSRKRGDDASRNY 51
Cdd:pfam02079  1 MSSRKKKKHGGMRGGKNAAHHGGKKGGGKKKKRKGGLKKRKKCCDAANNNR 51
TP1 pfam02079
Nuclear transition protein 1;
2-52 3.02e-08

Nuclear transition protein 1;


Pssm-ID: 460439  Cd Length: 51  Bit Score: 44.31  E-value: 3.02e-08
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 6678395     2 STSRKLKTHGMRRGKNRAPHKGVKRGGSKRKYRKSVLKSRKRGDDASRNYR 52
Cdd:pfam02079  1 MSSRKKKKHGGMRGGKNAAHHGGKKGGGKKKKRKGGLKKRKKCCDAANNNR 51
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH