NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2563195369|ref|NP_001410736|]
View 

serine/arginine repetitive matrix protein 4 [Danio rerio]

Protein Classification

SRRM_C domain-containing protein( domain architecture ID 10633612)

SRRM_C domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
SRRM_C pfam15230
Serine/arginine repetitive matrix protein C-terminus; This domain is found near to the ...
 440-499 3.01e-12

Serine/arginine repetitive matrix protein C-terminus; This domain is found near to the C-terminus of Serine/arginine repetitive matrix proteins 3 and 4.


:

Pssm-ID: 464573  Cd Length: 67  Bit Score: 61.75  E-value: 3.01e-12
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2563195369 440 HSRCTTHRFRERKRYCSSCKS-----RKHSRRRPSSPMRKRRRDSPSHLEARRITSARKRPIPYY 499
Cdd:pfam15230   1 RSRSSSSRERDSKSKSSSSGSspareRARRRSRSYSPIRKRRRDSPSHLEARRITSARKRPIPYY 65
 
Name Accession Description Interval E-value
SRRM_C pfam15230
Serine/arginine repetitive matrix protein C-terminus; This domain is found near to the ...
 440-499 3.01e-12

Serine/arginine repetitive matrix protein C-terminus; This domain is found near to the C-terminus of Serine/arginine repetitive matrix proteins 3 and 4.


Pssm-ID: 464573  Cd Length: 67  Bit Score: 61.75  E-value: 3.01e-12
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2563195369 440 HSRCTTHRFRERKRYCSSCKS-----RKHSRRRPSSPMRKRRRDSPSHLEARRITSARKRPIPYY 499
Cdd:pfam15230   1 RSRSSSSRERDSKSKSSSSGSspareRARRRSRSYSPIRKRRRDSPSHLEARRITSARKRPIPYY 65
 
Name Accession Description Interval E-value
SRRM_C pfam15230
Serine/arginine repetitive matrix protein C-terminus; This domain is found near to the ...
 440-499 3.01e-12

Serine/arginine repetitive matrix protein C-terminus; This domain is found near to the C-terminus of Serine/arginine repetitive matrix proteins 3 and 4.


Pssm-ID: 464573  Cd Length: 67  Bit Score: 61.75  E-value: 3.01e-12
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2563195369 440 HSRCTTHRFRERKRYCSSCKS-----RKHSRRRPSSPMRKRRRDSPSHLEARRITSARKRPIPYY 499
Cdd:pfam15230   1 RSRSSSSRERDSKSKSSSSGSspareRARRRSRSYSPIRKRRRDSPSHLEARRITSARKRPIPYY 65
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH