|
Name |
Accession |
Description |
Interval |
E-value |
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
160-736 |
3.08e-62 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 228.94 E-value: 3.08e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 160 LQHQNTDLQRELGNLKRELELTNQKLGSSMHSIKTFWSPELKKERALRKEESAKYSLINDQLKLLSTENQKQAMLVRQLE 239
Cdd:pfam10174 1 LQAQLRDLQRENELLRRELDIKESKLGSSMNSIKTFWSPELKKERALRKEEAARISVLKEQYRVTQEENQHLQLTIQALQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 240 EELRLR-----MRQPNLEM---------------QQQMEAIYAENDHLQREISILRETIKDLECRVETQKQTLIARDESI 299
Cdd:pfam10174 81 DELRAQrdlnqLLQQDFTTspvdgedkfstpeltEENFRRLQSEHERQAKELFLLRKTLEEMELRIETQKQTLGARDESI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 300 KKLLEMLQAKGMGK------------------------------------------------------------------ 313
Cdd:pfam10174 161 KKLLEMLQSKGLPKksgeedwertrriaeaemqlghlevlldqkekenihlreelhrrnqlqpdpaktkalqtviemkdt 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 314 ------------EEERQMFQQMQAMAQKQ---------------------LDEFRLEIQRRDQEILAMAAKMKTLEEQHQ 360
Cdd:pfam10174 241 kisslernirdlEDEVQMLKTNGLLHTEDreeeikqmevykshskfmknkIDQLKQELSKKESELLALQTKLETLTNQNS 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 361 DYQRHIAVLKESLCAKEEHYNMLQTDVEEMRARLEEKNRLIEKKTQGTLQTVQERNRLTSELTELKDHMDIKDRKISVLQ 440
Cdd:pfam10174 321 DCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKSTLAGEIRDLKDMLDVKERKINVLQ 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 441 RKIENLEDLLKEKDNQVDMARARLSAMQAHHSSSEGALTSLEEAIGDKEKQMAQLRDQRDRAEHEKQEERDLHEREVADY 520
Cdd:pfam10174 401 KKIENLQEQLRDKDKQLAGLKERVKSLQTDSSNTDTALTTLEEALSEKERIIERLKEQREREDRERLEELESLKKENKDL 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 521 KIKLRAAESEVEKLQTRL----ERAVTERER----------LEIKLEASQSELGKSKAELEKATcEMGRSSADWESTKQR 586
Cdd:pfam10174 481 KEKVSALQPELTEKESSLidlkEHASSLASSglkkdsklksLEIAVEQKKEECSKLENQLKKAH-NAEEAVRTNPEINDR 559
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 587 IARLELENERLKHDLERSQV----LMQLEEQTTLHKTTFGRTTMTTSQELDRAQERADKASAELRRTQAELRvTQGETEK 662
Cdd:pfam10174 560 IRLLEQEVARYKEESGKAQAeverLLGILREVENEKNDKDKKIAELESLTLRQMKEQNKKVANIKHGQQEMK-KKGAQLL 638
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2329048320 663 RFSDAERAREEAAALQEKLEKSQGEVYRLKAKLENAQGEQESLRQELEKAQSGVSRIHADRDRAFSEVEKIKEE 736
Cdd:pfam10174 639 EEARRREDNLADNSQQLQLEELMGALEKTRQELDATKARLSSTQQSLAEKDGHLTNLRAERRKQLEEILEMKQE 712
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
418-1214 |
6.00e-25 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 113.61 E-value: 6.00e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 418 LTSELTELKDHMDIKDRKISVLQRKIENLEDLLKEKDNQVDMARARLSAMQAHHSSSEGALTSLEEAIGDKEKQMAQLRD 497
Cdd:TIGR02168 230 LVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 498 QRDRAEHEKQEerdlHEREVADYKIKLRAAESEVEKLQTRLERAVTERERLEIKLEASQSELGKSKAELEKATCEMGRSS 577
Cdd:TIGR02168 310 RLANLERQLEE----LEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLR 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 578 ADWESTKQRIARLELENERLKHDLERSQvlmqlEEQTTLHKTTFGRTTMTTSQELDRAQERADKASAELRRTQAELRVTQ 657
Cdd:TIGR02168 386 SKVAQLELQIASLNNEIERLEARLERLE-----DRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLE 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 658 GETEKRFSDAERAREEAAALQEKLEKSQGEVYRLKAKLENAQGEQESLRQELEKAqsgvSRIHADRDRAfSEVEKIKEEM 737
Cdd:TIGR02168 461 EALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQ----SGLSGILGVL-SELISVDEGY 535
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 738 ERTQATLGKSQLQHeKLQNSLDKAQNEVDHLQDKLDKACTENRRLVLEKEKLTYDYDNLQSQLDKALGQAARMQKERETL 817
Cdd:TIGR02168 536 EAAIEAALGGRLQA-VVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKL 614
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 818 S------LDTDRIREKLEKTQVQLGRIQKERDQFSDELETLKER------SESAQTLLMKAARDREAMQTDLEVLKERYE 885
Cdd:TIGR02168 615 RkalsylLGGVLVVDDLDNALELAKKLRPGYRIVTLDGDLVRPGgvitggSAKTNSSILERRREIEELEEKIEELEEKIA 694
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 886 KSHAIQQKLQMERDDAVTEVEILKEKLDKALYASQKLIDEKDTSNKEFEKMLEKYDRAQNEIYRLQSRCDTAEADRARLE 965
Cdd:TIGR02168 695 ELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAE 774
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 966 VEAERSGLAASKAREDLRKLQDESTRLQEACDRAALQLSRAKECEDNARSELEHSRDRFDKLQTDIRRAQGEKEHFQSEL 1045
Cdd:TIGR02168 775 EELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDI 854
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1046 ERVTYELERAHAAQTKASASVEAAKEEAAHYAVELEKMRDRYEKSQVELRKLQDT-DTFGRETRRLKEENERLREKLDKT 1124
Cdd:TIGR02168 855 ESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKrSELRRELEELREKLAQLELRLEGL 934
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1125 LMELETIRGK-SQYESESFEKYKDKYEKIEMEVQNMESKLHETSLQLElSKGEVAKM----LANQEKQRSELERAHIERE 1199
Cdd:TIGR02168 935 EVRIDNLQERlSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIK-ELGPVNLAaieeYEELKERYDFLTAQKEDLT 1013
|
810
....*....|....*
gi 2329048320 1200 KARDKHEKLLKEVDR 1214
Cdd:TIGR02168 1014 EAKETLEEAIEEIDR 1028
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
473-1322 |
1.00e-21 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 103.21 E-value: 1.00e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 473 SSEGALTSLEEAIGDKEKQMAQLRDQRDRAEHEKQEERDLHEREVADYKIKLRAAESEVEKLQTRLERAVTERERLEIKL 552
Cdd:TIGR02168 183 RTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAEL 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 553 EASQSELGKSKAELEKATCEMGRSSADWESTKQRIARLELENERLKHDLERSQvlmqleeqttlhkttfgRTTMTTSQEL 632
Cdd:TIGR02168 263 QELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLE-----------------RQLEELEAQL 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 633 DRAQERADKASAELRRTQAELrvtqgetekrfsdaerareeaAALQEKLEKSQGEVYRLKAKLENAQGEQESLRQELEKA 712
Cdd:TIGR02168 326 EELESKLDELAEELAELEEKL---------------------EELKEELESLEAELEELEAELEELESRLEELEEQLETL 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 713 QSGVSRIHADRDRAFSEVEKIKEEMERTQATLGK-----SQLQHEKLQNSLDKAQNEVDHLQDKLDKACTENRRLVLEKE 787
Cdd:TIGR02168 385 RSKVAQLELQIASLNNEIERLEARLERLEDRRERlqqeiEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALE 464
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 788 KLTYDYDNLQSQLDKALGQAARMQKERETLsldtDRIREKLEKTQVQLGRIQKERDQFSDELETLKER------------ 855
Cdd:TIGR02168 465 ELREELEEAEQALDAAERELAQLQARLDSL----ERLQENLEGFSEGVKALLKNQSGLSGILGVLSELisvdegyeaaie 540
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 856 ---SESAQTLLMKaarDREAMQTDLEVLKE-RYEKSHAIQQKLQMERDDAVTEVEILKEKLDKALYASQkLIDEKDTSNK 931
Cdd:TIGR02168 541 aalGGRLQAVVVE---NLNAAKKAIAFLKQnELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKD-LVKFDPKLRK 616
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 932 EFEKML------EKYDRAQNEI--YRLQSRCDTAEADRARleveaeRSGLAASKAREDLRKLQDESTRLqeacDRAALQL 1003
Cdd:TIGR02168 617 ALSYLLggvlvvDDLDNALELAkkLRPGYRIVTLDGDLVR------PGGVITGGSAKTNSSILERRREI----EELEEKI 686
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1004 SRAKECEDNARSELEHSRDRFDKLQTDIRRAQGEKEHFQSELERVTYELERAHAAQTKASASVEAAKEEAAHYAVELEKM 1083
Cdd:TIGR02168 687 EELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEEL 766
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1084 RDRYEKSQVELrklqdtdtfgretRRLKEENERLREKLDKTLMELETIRGKSQYESESFEKYKDKYEKIEMEVQNMESKL 1163
Cdd:TIGR02168 767 EERLEEAEEEL-------------AEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRI 833
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1164 HETSLQLELSKGEVAKMLANQEKQRSELERAHIEREKARDKHEKLLKEVDRLRLQQSSVspgdpvrastsssSALSAGER 1243
Cdd:TIGR02168 834 AATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALL-------------RSELEELS 900
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1244 QEIDRLRDRLEKALQSRDATELEAGRLAKELEKAQMHLAKQQEN-TESTRIEFERMGAELGRLHDRLEKAEAEREALRQA 1322
Cdd:TIGR02168 901 EELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERlSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENK 980
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
528-1320 |
2.51e-19 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 95.13 E-value: 2.51e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 528 ESEVEKLQTRLERAVTERERLEIKLEASQSELGKSKAELEKAtcemgRSSADWESTKQRIARLELENERLKHDLERSQVL 607
Cdd:TIGR02169 169 DRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKA-----ERYQALLKEKREYEGYELLKEKEALERQKEAIE 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 608 MQL----EEQTTLHKTTFGRTTMTTSQELDRAQERA---DKASAELRRTQAELRVTQGETEKRFSDAERAREEAAALQEK 680
Cdd:TIGR02169 244 RQLasleEELEKLTEEISELEKRLEEIEQLLEELNKkikDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEER 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 681 LEKSQGEVYRLKAKLENAQGEQESLRQELEKAQSGVSRIHADRDRAFSEVEKIKEEMERTQATLGKSQLQHEKLQNSLDK 760
Cdd:TIGR02169 324 LAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINE 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 761 AQNEVDHLQDKLDKACTENRRLVLEKEKLTYDYDNLQSQLDKALGQAARMQKERETLSLDTDRIREKLEKTQVQLGRIQK 840
Cdd:TIGR02169 404 LKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEK 483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 841 ERDQFSDELETLKERSESAQTLLMKAARDREAMQTDLE----------VLKERYEK------SHAIQQKLQMERDDAVTE 904
Cdd:TIGR02169 484 ELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQgvhgtvaqlgSVGERYATaievaaGNRLNNVVVEDDAVAKEA 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 905 VEILKEKldKALYASQKLIDEKDTSNKEFEKMLE---------------KYDRAQNEIYR---LQSRCDTAEA--DRARL 964
Cdd:TIGR02169 564 IELLKRR--KAGRATFLPLNKMRDERRDLSILSEdgvigfavdlvefdpKYEPAFKYVFGdtlVVEDIEAARRlmGKYRM 641
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 965 EVEA----ERSG------LAASKAREDLRKLQDESTRLQEACDRAALQLSRAKECEDNARSELEHSRDRFDKLQTDIRRA 1034
Cdd:TIGR02169 642 VTLEgelfEKSGamtggsRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEI 721
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1035 QGEKEHFQSELERVTYELERAHAAQTKASASVEAAKEEAAHYAVELEKMRDRYEKSQVELRKLQD--TDTFGRETRRLKE 1112
Cdd:TIGR02169 722 EKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEArlSHSRIPEIQAELS 801
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1113 ENERLREKLDKTLMELETIRGKSQYESESFEKYKDKYEKIEMEVQNMESKLHETSLQLELSKGEVAKMLANQEKQRSELE 1192
Cdd:TIGR02169 802 KLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLE 881
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1193 RAHIEREKARDKHEKLLKEVDRLRLQQSSVSpgDPVRASTSSSSALSAGERQEIDRLrDRLEKALQSRDATELEAGRLAK 1272
Cdd:TIGR02169 882 SRLGDLKKERDELEAQLRELERKIEELEAQI--EKKRKRLSELKAKLEALEEELSEI-EDPKGEDEEIPEEELSLEDVQA 958
|
810 820 830 840
....*....|....*....|....*....|....*....|....*...
gi 2329048320 1273 ELEKAQMHLAKQQENTESTRIEFERMGAELGRLHDRLEKAEAEREALR 1320
Cdd:TIGR02169 959 ELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAIL 1006
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
690-1429 |
6.03e-18 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 90.89 E-value: 6.03e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 690 RLKAKLENAQGEQEsLRQELEKAQSGVS-----RIHADRDRAFSEVEKIKEEMERTQATLGKSQLQHEKLQNSLDKAQNE 764
Cdd:TIGR02168 204 SLERQAEKAERYKE-LKAELRELELALLvlrleELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEE 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 765 VDHLQDKLDKACTENRRLVLEKEKLTYDYDNLQSQLDKALGQAARMQKERETLSLDTDRIREKLEKTQVQLGRIQKERDQ 844
Cdd:TIGR02168 283 IEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEE 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 845 FSDELETLKERSESAQTLLMKAARDR--------------EAMQTDLEVLKERYEKSHAIQQKLQM-----ERDDAVTEV 905
Cdd:TIGR02168 363 LEAELEELESRLEELEEQLETLRSKVaqlelqiaslnneiERLEARLERLEDRRERLQQEIEELLKkleeaELKELQAEL 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 906 EILKEKLDKALYASQKLIDEKDTSNKEFEKMLEKYDRAQNEIYRLQSRCDTAEADRARLE--------VEAERSGLAASK 977
Cdd:TIGR02168 443 EELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEgfsegvkaLLKNQSGLSGIL 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 978 AR-EDLRKLQDESTRLQEACDRAALQ------LSRAKEC-------EDNARSELEHSRDRFDKLQTDIRRAQGEKEHFQS 1043
Cdd:TIGR02168 523 GVlSELISVDEGYEAAIEAALGGRLQavvvenLNAAKKAiaflkqnELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLG 602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1044 ELERVTYELERAHAA-----------QTKASASVEAAKEEAAHYAVELEKMRDRYEKSQVELRKLQDTDTFGR--ETRRL 1110
Cdd:TIGR02168 603 VAKDLVKFDPKLRKAlsyllggvlvvDDLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERrrEIEEL 682
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1111 KEENERLREKLDKTLMELETIRgksqyesESFEKYKDKYEKIEMEVQNMESKLHETSLQLELSKGEVAKMLANQEKQRSE 1190
Cdd:TIGR02168 683 EEKIEELEEKIAELEKALAELR-------KELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKE 755
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1191 LERAHIEREKARDKHEKLLKEVDRLRLQQSSVSPG-DPVRASTSSSSALSAGERQEIDRLRDRLEKALQSRDATELEAGR 1269
Cdd:TIGR02168 756 LTELEAEIEELEERLEEAEEELAEAEAEIEELEAQiEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAA 835
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1270 LAKELEKAQMHLAKQQENTESTRIEFERMGAELGRLHDRLEKAEAEREALRQANRSggagaaphpqLEKHVQKLESDVKQ 1349
Cdd:TIGR02168 836 TERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALAL----------LRSELEELSEELRE 905
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1350 LAMEREQLVLQLEKSQEILMNFQKELQNAEAELQKTREenrKLRNGHQVPPVA-APPAGPSPAEFQAMQKEIQTLQQKLQ 1428
Cdd:TIGR02168 906 LESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQE---RLSEEYSLTLEEaEALENKIEDDEEEARRRLKRLENKIK 982
|
.
gi 2329048320 1429 E 1429
Cdd:TIGR02168 983 E 983
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
629-1174 |
1.55e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 86.14 E-value: 1.55e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 629 SQELDRAQERAdkASAELRRTQAELRVTQGETEKRFSDAERAREEAAALQEKLEKSQGEVYRLKAKLENAQGEQESLRQE 708
Cdd:COG1196 219 KEELKELEAEL--LLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 709 LEKAQSGVSRIHADRDRAFSEVEKIKEEMERTQATLGKSQLQHEKLQNSLDKAQNEVDHLQDKLDKACTENRRLVLEKEK 788
Cdd:COG1196 297 LARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAE 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 789 LTYDYDNLQSQLDKALGQAARMQKERETLSLDTDRIREKLEKTQVQLGRIQKERDQFSDELETLKERSESAQTLLMKAAR 868
Cdd:COG1196 377 AEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEE 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 869 DREAMQTDLEVLKERYEKSHAIQQKLQMERDDAVTEVEILKEKLD-----------KALYASQKLIDEKDTSNKEFEKML 937
Cdd:COG1196 457 EEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEAdyegflegvkaALLLAGLRGLAGAVAVLIGVEAAY 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 938 EKYDRAQNEIYRLQSRCDTAEADRARLEVEAERSGLAASKAREDL---RKLQDESTRLQEACDRAALQLSRAKECEDNAR 1014
Cdd:COG1196 537 EAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKiraRAALAAALARGAIGAAVDLVASDLREADARYY 616
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1015 SELEHSRDRfDKLQTDIRRAQGEKEHFQSELERVTYELERAHAAQTKASASVEAAKEEAAhyavELEKMRDRYEKSQVEL 1094
Cdd:COG1196 617 VLGDTLLGR-TLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALL----EAEAELEELAERLAEE 691
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1095 RKLQDTDTFGRETRRLKEENERLREKLDKTLMELETIRGKSQYESESFEKYKDKYEKIEMEVQNMESKLHETSLQLELSK 1174
Cdd:COG1196 692 ELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELER 771
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
199-880 |
8.43e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 83.95 E-value: 8.43e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 199 ELKKERALRKEESAKYSLINDQLKLLSTENQKQAMLVRQLEEEL-RLRMRQPNLEMQQQMeaIYAENDHLQREISILRET 277
Cdd:TIGR02168 247 ELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELyALANEISRLEQQKQI--LRERLANLERQLEELEAQ 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 278 IKDLECRVETQKQTLIARD---ESIKKLLEMLQAKGMGKEEERQMFQQMQAMAQKQLDEFRLEIQRRDQEILAMAAKMKT 354
Cdd:TIGR02168 325 LEELESKLDELAEELAELEeklEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIER 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 355 LEEQHQDYQRHIAVLKESLcaKEEHYNMLQTDVEEMRARLEEKNRLIEKkTQGTLQTVQER--------NRLTSELTELK 426
Cdd:TIGR02168 405 LEARLERLEDRRERLQQEI--EELLKKLEEAELKELQAELEELEEELEE-LQEELERLEEAleelreelEEAEQALDAAE 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 427 DHMDIKDRKISVLQRKIENLEDLLKEKdNQVDMARARLSAMQAHHSSS----EGALTSLEEAIG---------DKEKQMA 493
Cdd:TIGR02168 482 RELAQLQARLDSLERLQENLEGFSEGV-KALLKNQSGLSGILGVLSELisvdEGYEAAIEAALGgrlqavvveNLNAAKK 560
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 494 ----------------QLRDQRDRAEHEKQEERDLHEREVADYKIKLRAAESEVEK--------------LQTRLERAVT 543
Cdd:TIGR02168 561 aiaflkqnelgrvtflPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKalsyllggvlvvddLDNALELAKK 640
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 544 ERERLEI-----------------KLEASQSELGKSKaELEKATCEMGRSSADWESTKQRIARLELENERLKHDLErsQV 606
Cdd:TIGR02168 641 LRPGYRIvtldgdlvrpggvitggSAKTNSSILERRR-EIEELEEKIEELEEKIAELEKALAELRKELEELEEELE--QL 717
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 607 LMQLEEQTTLHKtTFGRTTMTTSQELDRAQERADKASAELRRTQAELRVTQGETEKRFSDAERAREEAAALQEKLEKSQG 686
Cdd:TIGR02168 718 RKELEELSRQIS-ALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKE 796
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 687 EVYRLKAKLENAQGEQESLRQELEKAQSGVSRIHADRDRAFSEVEKIKEEMERTQATLGKSQLQHEKLQNSLDKAQNEVD 766
Cdd:TIGR02168 797 ELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELE 876
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 767 HLQDKLDKACTENRRLVLEKEKLTYDYDNLQSQLDKALGQAARMQKERETlsldtdrIREKLEKTQVQLGRIQKE-RDQF 845
Cdd:TIGR02168 877 ALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQ-------LELRLEGLEVRIDNLQERlSEEY 949
|
730 740 750
....*....|....*....|....*....|....*
gi 2329048320 846 SDELETLKERSESAQTLLMKAARDREAMQTDLEVL 880
Cdd:TIGR02168 950 SLTLEEAEALENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
827-1569 |
1.03e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 83.57 E-value: 1.03e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 827 KLEKTQVQLGRIQKERDQFSDELETLKERSESAQTLLMKAARDREAmqtDLEVLKERYEKSHAIQQKLQMERDDAVTEVE 906
Cdd:TIGR02168 180 KLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELREL---ELALLVLRLEELREELEELQEELKEAEEELE 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 907 ILKEKLDKALYASQKLIDEKDTSNKEFEKMLEKYDRAQNEIYRL-------QSRCDTAEADRARLEVEAERSGLAASKAR 979
Cdd:TIGR02168 257 ELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLeqqkqilRERLANLERQLEELEAQLEELESKLDELA 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 980 EDLRKLQDESTRLQEACDRAALQLSRAKECEDNARSELEHSRDRFDKLQTDIRRAQGEKEHFQSELERVTYELERAHAAQ 1059
Cdd:TIGR02168 337 EELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRR 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1060 TKASASVEAAKEEAAhyAVELEKMRDRYEKSQVELRKLQDTDTFGRET-RRLKEENERLREKLDKTLMELETIRGKSQYE 1138
Cdd:TIGR02168 417 ERLQQEIEELLKKLE--EAELKELQAELEELEEELEELQEELERLEEAlEELREELEEAEQALDAAERELAQLQARLDSL 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1139 SESFEKYKDKYEKIEMEVQNmesklhetSLQLELSKGEVAKMLANQEKQRSELERA--------HIEREKARDKHEKLLK 1210
Cdd:TIGR02168 495 ERLQENLEGFSEGVKALLKN--------QSGLSGILGVLSELISVDEGYEAAIEAAlggrlqavVVENLNAAKKAIAFLK 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1211 EVDRLR---LQQSSVSPGDP--VRASTSSSSALSAGERQEIDRLRDRLEKALQSRDATEL------EAGRLAKELEKAQM 1279
Cdd:TIGR02168 567 QNELGRvtfLPLDSIKGTEIqgNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLvvddldNALELAKKLRPGYR 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1280 HLAKQQEN-TESTRIEFERMGAELGRLHDR--LEKAEAEREALRQANRsggagaaphpQLEKHVQKLESDVKQLAMEREQ 1356
Cdd:TIGR02168 647 IVTLDGDLvRPGGVITGGSAKTNSSILERRreIEELEEKIEELEEKIA----------ELEKALAELRKELEELEEELEQ 716
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1357 LVLQLEKSQEILMNFQKELQNAEAELQKTREENRKLR----NGHQVPPVAAPPAGPSPAEFQAMQKEIQTLQQKLQESER 1432
Cdd:TIGR02168 717 LRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSkeltELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKE 796
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1433 ALQAAGPQQAQAAAAAGASREEIEQWRKVIEQEKSRADMADKAAQEMHKRIQLMDQHIKDQHAQMQKMQQQMQQQQQAAQ 1512
Cdd:TIGR02168 797 ELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELE 876
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*..
gi 2329048320 1513 QAVQQAAQQQQSAAGAGgadpKELEKVRGELQAACTERDRFQQQLELLVTELEKSKM 1569
Cdd:TIGR02168 877 ALLNERASLEEALALLR----SELEELSEELRELESKRSELRRELEELREKLAQLEL 929
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
333-914 |
1.27e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 83.06 E-value: 1.27e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 333 EFRLEIQRRDQEILAMA-----AKMKTLEEQHQDYQRHIAVLKESLCAKEEHYNMLQTDVEEMRARLEEKNRLIEKKTQG 407
Cdd:COG1196 217 ELKEELKELEAELLLLKlreleAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 408 TLQTVQERNRLTSELTELKDHMDIKDRKISVLQRKIENLEDLLKEKDNQVDMARARLSAMQAHHSSSEGALTSLEEAIGD 487
Cdd:COG1196 297 LARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAE 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 488 KEKQMAQLRDQRDRAEHEKQEERDlherevadykiKLRAAESEVEKLQTRLERAVTERERLEIKLEASQSELGKSKAELE 567
Cdd:COG1196 377 AEEELEELAEELLEALRAAAELAA-----------QLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALE 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 568 KATCEMGRSSAdwESTKQRIARLELENERLKHDLERSQVLMQLEEQTTLHKTTFGRTTMTTSQELDRAQERADKASAELR 647
Cdd:COG1196 446 EAAEEEAELEE--EEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLA 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 648 RTQAELRVTQGETEKRFSDAERAREEAAALQEKLEKSQGEVYRLKAKLENAQGEQESLRQELEKAQSGVSRIHADRDRAF 727
Cdd:COG1196 524 GAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDL 603
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 728 SEVEKIKEEMERTQatlgksqlqhekLQNSLDKAQNEVDHLQDKLDKACTENRRLVLEKEKLTYDYDNLQSQLDKALGQA 807
Cdd:COG1196 604 VASDLREADARYYV------------LGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELL 671
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 808 ARMQKERETLSLDTDRIREKLEKTQVQLGRIQKERDQFSDELETLKERSESAQTLLMKAARDREAMQTDLEVLKERYEKS 887
Cdd:COG1196 672 AALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEE 751
|
570 580
....*....|....*....|....*..
gi 2329048320 888 HAIQQKLQMERDDAVTEVEILKEKLDK 914
Cdd:COG1196 752 ALEELPEPPDLEELERELERLEREIEA 778
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
244-998 |
1.87e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 82.80 E-value: 1.87e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 244 LRMRQPNLEMQ----QQMEAIYAENDHLQREISILRetIKDLECRVETQKQTLIA---RDESIKKLLEMLQAKGMGKEEE 316
Cdd:TIGR02168 198 LERQLKSLERQaekaERYKELKAELRELELALLVLR--LEELREELEELQEELKEaeeELEELTAELQELEEKLEELRLE 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 317 RQMFQQMQAMAQKQLDEFRLEIQRRDQEILAMAAKMKTL-------EEQHQDYQRHIAVLKESLCAKEEHYNMLQTDVEE 389
Cdd:TIGR02168 276 VSELEEEIEELQKELYALANEISRLEQQKQILRERLANLerqleelEAQLEELESKLDELAEELAELEEKLEELKEELES 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 390 MRARLEEKNRLIEKKTQGTLQTVQERNRLTSELTELKdhmdikdRKISVLQRKIENLEDLLKEKDNQVDMARARLSAMQA 469
Cdd:TIGR02168 356 LEAELEELEAELEELESRLEELEEQLETLRSKVAQLE-------LQIASLNNEIERLEARLERLEDRRERLQQEIEELLK 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 470 hhSSSEGALTSLEEAIGDKEKQMAQLRDQRDRAEHEK---QEERDLHEREVADYKIKLRAAESEVEKLQTRLERAVTERE 546
Cdd:TIGR02168 429 --KLEEAELKELQAELEELEEELEELQEELERLEEALeelREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSE 506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 547 RL-EIKLEASQ--------SELGKSKAELEKATCEMGRSSA------DWESTKQRIARLELENERLKHDLERSQVLMQLE 611
Cdd:TIGR02168 507 GVkALLKNQSGlsgilgvlSELISVDEGYEAAIEAALGGRLqavvveNLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEI 586
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 612 EQTTLHKTTFGRTTMTTSQELDRAQERADK-----------------ASAELRRTQAELR-VTQ------------GETE 661
Cdd:TIGR02168 587 QGNDREILKNIEGFLGVAKDLVKFDPKLRKalsyllggvlvvddldnALELAKKLRPGYRiVTLdgdlvrpggvitGGSA 666
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 662 KRFSDAERAREEAAALQEKLEKSQGEVYRLKAKLENAQGEQESLRQELEKAQSG-------VSRIHADRDRAFSEVEKIK 734
Cdd:TIGR02168 667 KTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKEleelsrqISALRKDLARLEAEVEQLE 746
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 735 EEMERTQATLGKSQLQHEKLQNSLDKAQNEVDHLQDKLDKACTENRRLVLEKEKLTYDYDNLQSQLDKALGQAARMQKER 814
Cdd:TIGR02168 747 ERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERL 826
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 815 ETLSLDTDRIREKLEKTQVQLGRIQKERDQFSDELETLKERSESAQTLLMKAARDREAMQTDLEVLKERYEKshaiqqkl 894
Cdd:TIGR02168 827 ESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEE-------- 898
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 895 qmerddavteveiLKEKLDKALYASQKLIDEKDTSNKEFEKMLEKYDRAQNEIYRLQSRCdtaeadRARLEVEAERSGLA 974
Cdd:TIGR02168 899 -------------LSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL------SEEYSLTLEEAEAL 959
|
810 820
....*....|....*....|....
gi 2329048320 975 ASKAREDLRKLQDESTRLQEACDR 998
Cdd:TIGR02168 960 ENKIEDDEEEARRRLKRLENKIKE 983
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
703-1492 |
2.17e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 82.41 E-value: 2.17e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 703 ESLRQELEKAqSGVSRIHADRDRAFSEVEKIKEEMERTQATLGKSQLQHEKLQNSLDKAQNEVDhLQDKLDKactenrrl 782
Cdd:TIGR02168 155 EERRAIFEEA-AGISKYKERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKE-LKAELRE-------- 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 783 vLEKEKLTYDYDNLQSQLDKALGQAARMQKERETLSLDTDRIREKLEKTQVQLGR-------IQKERDQFSDELETLKER 855
Cdd:TIGR02168 225 -LELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSEleeeieeLQKELYALANEISRLEQQ 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 856 SESAQTLLMKAARDREAMQTDLEVLKERYEKSHAIQQKLQMERDDAVTEVEILKEKLDKALYASQKLIDEKDTSNKEFEK 935
Cdd:TIGR02168 304 KQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLET 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 936 MLEKYDRAQNEIYRLQSRCDTAEADRARLEVEAERsgLAASKAREDLRKLQDESTRLQEACDRAALQLSRAKECEDNARS 1015
Cdd:TIGR02168 384 LRSKVAQLELQIASLNNEIERLEARLERLEDRRER--LQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEE 461
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1016 ELEHSRDRFDKLQTDIRRAQGEKEHFQSELERVTYELERAHAAQTKASASVEAAKEEAAHYAV--ELEKMRDRYEKS-QV 1092
Cdd:TIGR02168 462 ALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVlsELISVDEGYEAAiEA 541
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1093 ELRK-LQDTDTFGRETRRLKEENERLREKLDKTLMELETIRG-KSQYESESFEKYKDKYEKIEMEVQNMESKLhETSLQL 1170
Cdd:TIGR02168 542 ALGGrLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGtEIQGNDREILKNIEGFLGVAKDLVKFDPKL-RKALSY 620
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1171 ELSKGEVAKMLANQEKQRSELERahierekardkhekllkEVDRLRLQQSSVSPGDPVRASTSSSSALSAGERQEIDRLR 1250
Cdd:TIGR02168 621 LLGGVLVVDDLDNALELAKKLRP-----------------GYRIVTLDGDLVRPGGVITGGSAKTNSSILERRREIEELE 683
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1251 DRLEKALQSRDATELEAGRLAKELEKAQMHLAKQQENTESTRIEFERMGAELGRLhdrLEKAEAEREALRQANRSGGAGA 1330
Cdd:TIGR02168 684 EKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARL---EAEVEQLEERIAQLSKELTELE 760
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1331 APHPQLEKHVQKLESDVKQLAMEREQLVLQLEKSQEILMNFQKELQNAEAELQKTREENRKLRNGHQVPPVAAPpagpsp 1410
Cdd:TIGR02168 761 AEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIA------ 834
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1411 aefqAMQKEIQTLQQKLQESERALQAAGPQQAQAAAAAGASREEIEQWRKVIEQEKSRADMADKAAQEMHKRIQLMDQHI 1490
Cdd:TIGR02168 835 ----ATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKR 910
|
..
gi 2329048320 1491 KD 1492
Cdd:TIGR02168 911 SE 912
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
629-1382 |
9.83e-15 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 80.11 E-value: 9.83e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 629 SQELDRAQERADKASA--ELRRTQAELRVTQGETEKRfsdaeRAREEAAALQEKLEKSQGEVYRLKAKLENAQGEQESLR 706
Cdd:TIGR02169 197 RQQLERLRREREKAERyqALLKEKREYEGYELLKEKE-----ALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 707 QELEKAQSGVSRIHADRDRAF-SEVEKIKEEMERTQATLGKSQLQHEKLQNSLDKAQNEVDHLQDKLDKACTENRRLVLE 785
Cdd:TIGR02169 272 QLLEELNKKIKDLGEEEQLRVkEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKR 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 786 KEKLTYDYDNLQSQLDKALGQAARMQKERETLSLDTDRIREKLEKTQVQLGRIQKERDQFSDELETLKERsesaqtllmk 865
Cdd:TIGR02169 352 RDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEE---------- 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 866 aardREAMQTDLEVLKERyekshaiQQKLQMERDDAVTEVEILKEKLdkalyasQKLIDEKDTSNKEFEKMLEKYDRAQN 945
Cdd:TIGR02169 422 ----LADLNAAIAGIEAK-------INELEEEKEDKALEIKKQEWKL-------EQLAADLSKYEQELYDLKEEYDRVEK 483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 946 EIYRLQSRCDTAEAdRARLEVEAERSGLAASKARED--------LRKLQDESTRLQEACDRAA---LQL------SRAKE 1008
Cdd:TIGR02169 484 ELSKLQRELAEAEA-QARASEERVRGGRAVEEVLKAsiqgvhgtVAQLGSVGERYATAIEVAAgnrLNNvvveddAVAKE 562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1009 CEDNARSElEHSRDRFDKLqTDIRRAQGEKEHFQSE------LERVTYELERAHA-----AQTKASASVEAAKEEAAHY- 1076
Cdd:TIGR02169 563 AIELLKRR-KAGRATFLPL-NKMRDERRDLSILSEDgvigfaVDLVEFDPKYEPAfkyvfGDTLVVEDIEAARRLMGKYr 640
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1077 AVELEKmrDRYEKSQVELRKLQDTDTFGRETRRLKEENERLREKLDKTLMELETIRGK-SQYESESFEKYKdkyekiemE 1155
Cdd:TIGR02169 641 MVTLEG--ELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSElRRIENRLDELSQ--------E 710
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1156 VQNMESKLHETSLQLELSKGEVAKMLANQEKQRSELERAHIEREKARDKHEKLLKEVDRLRLQQSSVSP--GDPVRASTS 1233
Cdd:TIGR02169 711 LSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEalNDLEARLSH 790
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1234 SSSALSAGERQEIDRLRDRLEKALQSRDAT----ELEAGRLAKELEKAQMHLAKQQENTESTRIEFERMGAELGRLHDRL 1309
Cdd:TIGR02169 791 SRIPEIQAELSKLEEEVSRIEARLREIEQKlnrlTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEEL 870
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2329048320 1310 EKAEAEREALRqanrsggagaAPHPQLEKHVQKLESDVKQLAMEREQLVLQLEKSQEILMNFQKELQNAEAEL 1382
Cdd:TIGR02169 871 EELEAALRDLE----------SRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEEL 933
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
230-810 |
5.74e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 77.67 E-value: 5.74e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 230 KQAMLVRQLEEELRLRMRQPNL----EMQQQMEAIYAENDHLQREISILRETIKDLECRVETQKQTLIARDESIKKLLEM 305
Cdd:COG1196 210 EKAERYRELKEELKELEAELLLlklrELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 306 LQAKGMGKEEERQmfqqMQAMAQKQLDEFRLEIQRRDQEILAMAAKMKTLEEQHQDYQRHIAVLKESLCAKEEHYNMLQT 385
Cdd:COG1196 290 EYELLAELARLEQ----DIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEE 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 386 DVEEMRARLEEKNRLIEKKTQGTLQTVQERNRLTSELTELKDHMDIKDRKISVLQRKIENLEDLLKEKDNQVDMARARLS 465
Cdd:COG1196 366 ALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALE 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 466 AMQAHHSSSEGALTSLEEAIGDKEKQMAQLRDQRDRAEHEKQEERDLHEREVADYKIKLRAAESEVEKLQTRLERAVTER 545
Cdd:COG1196 446 EAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGA 525
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 546 ERLEIKLEAsqselgksKAELEKATCEMGRSSADWESTKQRIARLElenERLKHDLERSQVLMQLEEQTTLHKTTFGRTT 625
Cdd:COG1196 526 VAVLIGVEA--------AYEAALEAALAAALQNIVVEDDEVAAAAI---EYLKAAKAGRATFLPLDKIRARAALAAALAR 594
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 626 MTTSQELDRAQERADKASAELRRTQAELRVTQGETEKRFSDAERAREEAAALQEKLEKSQGEVYRLKAKLENAQGEQESL 705
Cdd:COG1196 595 GAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAAL 674
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 706 RQELEKAQSGVSRIHADRDRAFSEVEKIKEEMERTQATLGKSQLQHEKLQNSLDKAQNEVDHLQDKLDKACTENRRLVLE 785
Cdd:COG1196 675 LEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALE 754
|
570 580
....*....|....*....|....*
gi 2329048320 786 KEKLTYDYDNLQSQLDKALGQAARM 810
Cdd:COG1196 755 ELPEPPDLEELERELERLEREIEAL 779
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
201-883 |
7.78e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 73.95 E-value: 7.78e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 201 KKERALRKEESAKYSL---------INDQLKLLSTENQK----QAMLVRQLEEELRLRMRQPNlEMQQQMEAIYAENDHL 267
Cdd:TIGR02169 171 KKEKALEELEEVEENIerldliideKRQQLERLRREREKaeryQALLKEKREYEGYELLKEKE-ALERQKEAIERQLASL 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 268 QREISILRETIKDLECRVETQKQTLIARDESIKKLLE----MLQAKGMGKEEERQMFQQMQAMAQKQLDEFRLEIQRRDQ 343
Cdd:TIGR02169 250 EEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEeeqlRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEA 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 344 EILAMAAKMKTLEEQHQDYQRHIAVLKESLCAKEEHYNMLQTDVEEMRARLEEknrliekktqgtlqTVQERNRLTSELT 423
Cdd:TIGR02169 330 EIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAE--------------TRDELKDYREKLE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 424 ELKdhmdikdRKISVLQRKIENLEDLLKEKDNQVDMARARLSAMQAHHSSSEGALTSLEEAIGDKEKQMAQLRDQRDRAE 503
Cdd:TIGR02169 396 KLK-------REINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYE 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 504 hekQEERDLHErEVADYKIKLRAAESEVEKLQTR---LERAVTERERLEIKLEASQ-------SELGKSKAELEKAtCEM 573
Cdd:TIGR02169 469 ---QELYDLKE-EYDRVEKELSKLQRELAEAEAQaraSEERVRGGRAVEEVLKASIqgvhgtvAQLGSVGERYATA-IEV 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 574 GRSSA------DWESTKQ--------------------RIARLELENERLK----------------------------- 598
Cdd:TIGR02169 544 AAGNRlnnvvvEDDAVAKeaiellkrrkagratflplnKMRDERRDLSILSedgvigfavdlvefdpkyepafkyvfgdt 623
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 599 ---HDLERSQVLMQLEEQTTL----------------HKTTFGRTTMTTSQELDRAQERADKASAELRRTQAELRVTQGE 659
Cdd:TIGR02169 624 lvvEDIEAARRLMGKYRMVTLegelfeksgamtggsrAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENR 703
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 660 TEKRFSDAERAREEAAALQEKLEKSQGEVYRLKAKLENAQGEQESLRQELEKAQSGVSRIHADRDRAFSEVEKIKEEMER 739
Cdd:TIGR02169 704 LDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALND 783
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 740 TQATLGKSQLQheKLQNSLDKAQNEVDHLQDKLDKACTENRRLVLEKEKLTYDYDNLQSQLDKALGQAARMQKERETLSL 819
Cdd:TIGR02169 784 LEARLSHSRIP--EIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNG 861
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2329048320 820 DTDRIREKLEKTQV-------QLGRIQKERDQFSDELETLKERSESAQTLLMKAARDREAMQTDLEVLKER 883
Cdd:TIGR02169 862 KKEELEEELEELEAalrdlesRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEE 932
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
375-1156 |
5.04e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 71.25 E-value: 5.04e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 375 AKEEHYNMLQTDVEEMRARLeeknRLIEKKTqgtlqTVQERNRLTSELTELKDHMDIKDRKISVLQRKIENLEDLLKEKD 454
Cdd:TIGR02169 208 EKAERYQALLKEKREYEGYE----LLKEKEA-----LERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELN 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 455 NQV-DMARARLSAMQAHHSSSEGALTSLEEAIGDKEKQMAQLRDQRDRAE---HEKQEERDLHEREVADYKIKLRAAESE 530
Cdd:TIGR02169 279 KKIkDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEaeiDKLLAEIEELEREIEEERKRRDKLTEE 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 531 VEKLQTRLERAVTERERLEIKLEASQSELGKSKAELEKATCEMGRSSADWESTKQRIARLELENERLKHDLER-SQVLMQ 609
Cdd:TIGR02169 359 YAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGiEAKINE 438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 610 LEEQttlhKTTFGRTTMTTSQELDRAQERADKASAELRRTQAELRVTQGETEKRFSDAERAREEAAALQEKLEKSQGEVY 689
Cdd:TIGR02169 439 LEEE----KEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEE 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 690 RLKAKLENAQGEQESLRQELEKAQSGV-----SRIHA----DRDRAFSEVEKIKEEMERTQATLGKSQLQHEKLQNSLDK 760
Cdd:TIGR02169 515 VLKASIQGVHGTVAQLGSVGERYATAIevaagNRLNNvvveDDAVAKEAIELLKRRKAGRATFLPLNKMRDERRDLSILS 594
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 761 AQNEVDHLQDKLD-------------------------KACTENRRLV------LEK--------EKLTYDYDNLQSQLD 801
Cdd:TIGR02169 595 EDGVIGFAVDLVEfdpkyepafkyvfgdtlvvedieaaRRLMGKYRMVtlegelFEKsgamtggsRAPRGGILFSRSEPA 674
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 802 KALGQAAR---MQKERETLSLDTDRI-------REKLEKTQVQLGRIQKERDQFSDELETLKERSESAQTLLMKAARDRE 871
Cdd:TIGR02169 675 ELQRLRERlegLKRELSSLQSELRRIenrldelSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIE 754
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 872 AMQTDLEVLKERYEKSHAIQQKLQMERDDAvteveilkekldkalyasqklidEKDTSNKEFEKMLEKYDRAQNEIYRLQ 951
Cdd:TIGR02169 755 NVKSELKELEARIEELEEDLHKLEEALNDL-----------------------EARLSHSRIPEIQAELSKLEEEVSRIE 811
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 952 SRCDTAEADRARLEVEAERSGLAASKAREDLRKLQDESTRLQEACDRAALQLSRAKECEDNARSELEHSRDRFDKLQTDI 1031
Cdd:TIGR02169 812 ARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKER 891
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1032 RRAQGEKEHFQSELERVTYELERAHAAQTKASASVEAAKEEAAHYavELEKMRDRYEKSQV-ELRKLQDT-DTFGRETRR 1109
Cdd:TIGR02169 892 DELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEI--EDPKGEDEEIPEEElSLEDVQAElQRVEEEIRA 969
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1110 LKEENERLREKLD---KTLMELETIRGKSQYESESFEKYKDKYEKIEMEV 1156
Cdd:TIGR02169 970 LEPVNMLAIQEYEevlKRLDELKEKRAKLEEERKAILERIEEYEKKKREV 1019
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
706-1432 |
7.12e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 70.87 E-value: 7.12e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 706 RQELEKAQSGVSRIHADRDRAFSEVEKIKEEMERTQATLGKSQLQHEKLQNSLDKAQnEVDHLQDKLDKacTENRRLVLE 785
Cdd:TIGR02169 155 RRKIIDEIAGVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAE-RYQALLKEKRE--YEGYELLKE 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 786 KEKLTYDYDNLQSQLDKALGQAARMQKERETLSLDTDRIREKLE--------KTQVQLGRIQKERDQFSDELETLKERSE 857
Cdd:TIGR02169 232 KEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEelnkkikdLGEEEQLRVKEKIGELEAEIASLERSIA 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 858 SAQTLLMKAARDREAMQTDLEVLKERYEKSHAIQQKLQMERDDAVTEVEILKEKLDKALYASQKLIDEKDTSNKEFEKML 937
Cdd:TIGR02169 312 EKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYR 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 938 EKYDRAQNEIYRLQSRCDTAEADRARLEVEAERSGLAASKAREDLRKLQDESTRLQEACDRAALQLSRAKECEDNARSEL 1017
Cdd:TIGR02169 392 EKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQEL 471
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1018 EhsrdrfdKLQTDIRRAQGEKEHFQSELERVTYELERAHAAQTKASASVEAAKE--EAAHYAV-ELEKMRDRYEKS---- 1090
Cdd:TIGR02169 472 Y-------DLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKAsiQGVHGTVaQLGSVGERYATAieva 544
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1091 ---QVELRKLQDTDTFGRETRRLKEENERlreklDKTLMELETIRGKSQYESESFEK-----------YKDKYEKI---- 1152
Cdd:TIGR02169 545 agnRLNNVVVEDDAVAKEAIELLKRRKAG-----RATFLPLNKMRDERRDLSILSEDgvigfavdlveFDPKYEPAfkyv 619
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1153 ---EMEVQNMES-KLHETSLQLELSKGEV----AKMLANQEKQRSELERAHIEREKA---RDKHEKLLKEVDRLRLQQSS 1221
Cdd:TIGR02169 620 fgdTLVVEDIEAaRRLMGKYRMVTLEGELfeksGAMTGGSRAPRGGILFSRSEPAELqrlRERLEGLKRELSSLQSELRR 699
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1222 VspgdpvrastssssalsageRQEIDRLRDRLEKALQSRDATELEAGRLAKELEKAQMHLAKQQENTESTRIEFERMGAE 1301
Cdd:TIGR02169 700 I--------------------ENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSE 759
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1302 LGRLHDRLEKAEAEREALRQANRSGGAGAAPH--PQLEKHVQKLE----------SDVKQLAMEREQLVLQLEKSQEILM 1369
Cdd:TIGR02169 760 LKELEARIEELEEDLHKLEEALNDLEARLSHSriPEIQAELSKLEeevsriearlREIEQKLNRLTLEKEYLEKEIQELQ 839
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2329048320 1370 NFQKELQNAEAELQKTREE-NRKLRNGHQVPPVAAPPAGPSPAEFQAMQKEIQTLQQKLQESER 1432
Cdd:TIGR02169 840 EQRIDLKEQIKSIEKEIENlNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELER 903
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
814-1319 |
1.37e-11 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 69.68 E-value: 1.37e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 814 RETLSLDTDRIREKLEKTQV-QLGRIQKERDQFSDELETLKERSESAQTLLMKAA---RDREAMQTDLEVLKERYEKSHA 889
Cdd:PRK02224 186 RGSLDQLKAQIEEKEEKDLHeRLNGLESELAELDEEIERYEEQREQARETRDEADevlEEHEERREELETLEAEIEDLRE 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 890 IQQKLQMERDDAVTEVEILKEKLDKALYASQKLIDEKDTSNKEFEKMLEKYDRAQNEIYRLQSRCDTAEADRARLEVEAE 969
Cdd:PRK02224 266 TIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAE 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 970 RSGLAASKAREDLRKLQDESTRLQEACDRAALQLSRAKECEDNARSELEHSRDRFDKLQTDIRRAQGEKEHFQSELERV- 1048
Cdd:PRK02224 346 SLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELr 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1049 ------TYELERAHAAQTKASASVEAAKEEAAHYAVELEKMRDRYEKSQVELRKLQDtdtfgrETRRLKEENERLREKLD 1122
Cdd:PRK02224 426 ereaelEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEA------ELEDLEEEVEEVEERLE 499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1123 ktlmeletiRGKSQYESES-FEKYKDKYEKIEMEVQNMESKLHETSLQLELSKGEVAKMLANQEKQRSELERAHIEREKA 1201
Cdd:PRK02224 500 ---------RAEDLVEAEDrIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEA 570
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1202 RD-------KHEKLLKEVDRLRLQQSSVSP----GDPVRASTSSSSALSAGERQEIDRLRDRLEKALQSRDATELEAGRL 1270
Cdd:PRK02224 571 REevaelnsKLAELKERIESLERIRTLLAAiadaEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEARIEE 650
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1271 AKE-LEKAQMHLAKQQENTESTRIEFERMGAELGRLHDRLEKAEAEREAL 1319
Cdd:PRK02224 651 AREdKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEELRERR 700
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
395-1193 |
8.49e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 64.39 E-value: 8.49e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 395 EEKNRLIEKKTQGTLQTVQERNRLTSELTELKDHMDIKDRKISVLQRKIEnlEDLLKEKDNQVDMARARLSAMQAHHSSS 474
Cdd:PTZ00121 1094 EEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAE--EARKAEDAKRVEIARKAEDARKAEEARK 1171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 475 EGALTSLEEAIGDKE-KQMAQLRDQRD--RAEHEKQEERDLHEREVADYKIKLRAAE----SEVEKLQTRLERAVTERER 547
Cdd:PTZ00121 1172 AEDAKKAEAARKAEEvRKAEELRKAEDarKAEAARKAEEERKAEEARKAEDAKKAEAvkkaEEAKKDAEEAKKAEEERNN 1251
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 548 LEIK------LEASQSELGKSKAELEKATCEMGRSSADWESTKQRIARLELENERLKHDLERSQVLMQLEEQTTLHKTTF 621
Cdd:PTZ00121 1252 EEIRkfeearMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKA 1331
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 622 GRTTMTTSQ-----ELDRAQERADKASAELRRTQAELRVTQGETEKRFSDAERAREEAA----ALQEKLEKSQGEVYRLK 692
Cdd:PTZ00121 1332 DAAKKKAEEakkaaEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKkkadEAKKKAEEDKKKADELK 1411
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 693 AKLENAQGEQESLRQELEKAQSGVSRIHADRDRAFSEVEKIKEEMERTQATLGKSQlqhEKLQNSLDKAQNEVDHLQDKL 772
Cdd:PTZ00121 1412 KAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAE---EAKKADEAKKKAEEAKKADEA 1488
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 773 DKACTENRRLVLEKEKltydydnlQSQLDKALGQAARMQKERETLSLDTDRIREKLEKTQVQLGRIQKERDQFSDELETL 852
Cdd:PTZ00121 1489 KKKAEEAKKKADEAKK--------AAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKA 1560
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 853 KERSESAQTllMKAARDREAMQTDLEVLKERYEKSHAIQQKLQMERDDAVTEvEILKEKLDKALYASQKLIDEKDTSNKE 932
Cdd:PTZ00121 1561 EEKKKAEEA--KKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAE-EAKKAEEAKIKAEELKKAEEEKKKVEQ 1637
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 933 FEKMLEKYDRAQNEIYRLQSRCDTAEADRARLEVEAERSGLAASKAREDLRKLQDESTRLQEACDRAalQLSRAKECEDN 1012
Cdd:PTZ00121 1638 LKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKA--EELKKKEAEEK 1715
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1013 ARSELEHSRDRFDKLQTDIRRAQGEKEHFQSELERVTyELERAHAAQTKASASVEAAKEEAAHYAVELEKMRDRYEKSQV 1092
Cdd:PTZ00121 1716 KKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKD-EEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRM 1794
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1093 EL-RKLQDT-DTFGRETRRLKEEN---ERLREKLDKTLMELETIRGKSQYESESFEKYKDKYEKIEMEVQNMESKLHETS 1167
Cdd:PTZ00121 1795 EVdKKIKDIfDNFANIIEGGKEGNlviNDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEK 1874
|
810 820
....*....|....*....|....*.
gi 2329048320 1168 LQLELSKGEVAKMLANQEKQRSELER 1193
Cdd:PTZ00121 1875 DLKEDDEEEIEEADEIEKIDKDDIER 1900
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
331-613 |
1.16e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.55 E-value: 1.16e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 331 LDEFRLEIQRRDQEILAMAAKMKTLEEQHQDYQRHIAVLKESLCAKEEHYNMLQTDVEEMRARLEEKNRLIEKKTQgtlq 410
Cdd:TIGR02169 676 LQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQ---- 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 411 tvqERNRLTSELTELKDHMDIKDRKISVLQRKIENLEDllKEKDNQVDMARARLSAMQAHHSSSEGALTSLEEAIGDKEK 490
Cdd:TIGR02169 752 ---EIENVKSELKELEARIEELEEDLHKLEEALNDLEA--RLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTL 826
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 491 QMAQLRDQRDRAEH---EKQEERDLHEREVADYKIKLRAAESEVEKLQ-------TRLERAVTERERLEIKLEASQSELG 560
Cdd:TIGR02169 827 EKEYLEKEIQELQEqriDLKEQIKSIEKEIENLNGKKEELEEELEELEaalrdleSRLGDLKKERDELEAQLRELERKIE 906
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 2329048320 561 KSKAELEKATCEMGRSSADWESTKQRIARLELENERLKHDLERSQVLMQLEEQ 613
Cdd:TIGR02169 907 ELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAE 959
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
630-1169 |
3.40e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 62.00 E-value: 3.40e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 630 QELDRAQERADKASAELRRTQAELRvtqgETEKRFSDAERAREEAAALQEKLEKSQGEVYRLKAKLENAQGEQESLRQEL 709
Cdd:PRK03918 200 KELEEVLREINEISSELPELREELE----KLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEI 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 710 EKAQSGVSRIHADRDRAfSEVEKIKEEMERTQATLGKSQLQHEKLQNSLDKAQNEVDHLQDKLDKAC-TENRRLVLEKEK 788
Cdd:PRK03918 276 EELEEKVKELKELKEKA-EEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEeLKKKLKELEKRL 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 789 LTYDYDNLQSQLDKALGQAARMQKERETlSLDTDRIREKLEKTQVQLGRIQKERDQFSDELETLKERSESAQTLLM--KA 866
Cdd:PRK03918 355 EELEERHELYEEAKAKKEELERLKKRLT-GLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEelKK 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 867 ARD------REAMQTDLEVLKERYEKSHAIQQKLQMERDDAVTEVEILKEKLDKALYASQKLIDEKDTSN--KEFEKMLE 938
Cdd:PRK03918 434 AKGkcpvcgRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEqlKELEEKLK 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 939 KYD-----RAQNEIYRLQSRCDTAEADRARLEVEAERSGLAASKAREDLRKLQDESTRLQEACDRAALQLSRAKECEDNA 1013
Cdd:PRK03918 514 KYNleeleKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEER 593
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1014 RSELEHSRDRFDKLqtdiRRAQGEKEHFQSELERVTYELERAHAAQTKASASVEAAKEEAAhyavELEKMRDRYEKSQVE 1093
Cdd:PRK03918 594 LKELEPFYNEYLEL----KDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELE----ELEKKYSEEEYEELR 665
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2329048320 1094 LRKLQDTDTFGRETRRLkEENERLREKLDKTLMELET---IRGKSQYESESFEKYKDKYEKIEMEVQNMESKLHETSLQ 1169
Cdd:PRK03918 666 EEYLELSRELAGLRAEL-EELEKRREEIKKTLEKLKEeleEREKAKKELEKLEKALERVEELREKVKKYKALLKERALS 743
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
477-994 |
4.13e-09 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 61.59 E-value: 4.13e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 477 ALTSLEEAIGDKEKQMAQLRDQRDRAEHEKQEERDLHEREvADYKIKLRAAESEVEKLQTRLERAVTERERLEIKLEASQ 556
Cdd:PRK02224 207 RLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEH-EERREELETLEAEIEDLRETIAETEREREELAEEVRDLR 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 557 SELGKSKAELEKATCEMGRSSADWESTKQRIARLELENERLKHDLE--RSQVLMQLEEQTTLHKTTFG-----RTTMTTS 629
Cdd:PRK02224 286 ERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEecRVAAQAHNEEAESLREDADDleeraEELREEA 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 630 QELDRAQERADKASAELRRTQAELRVTQGETEKRFSDAERA----REEAAALQEKLEKSQGEVYRLKAKLENAQGEQESL 705
Cdd:PRK02224 366 AELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDlgnaEDFLEELREERDELREREAELEATLRTARERVEEA 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 706 RQELE-----------KAQSGVSRIHADRDRafseVEKIKEEMERTQATLGKSQLQHEKLQnSLDKAQNEVDHLQDKLDK 774
Cdd:PRK02224 446 EALLEagkcpecgqpvEGSPHVETIEEDRER----VEELEAELEDLEEEVEEVEERLERAE-DLVEAEDRIERLEERRED 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 775 ActeNRRLVLEKEKLTYDYDNLQSQLDKALGQAARMQKEREtlslDTDRIREKLEKTQVQLGRIQKERDQFSDELETLkE 854
Cdd:PRK02224 521 L---EELIAERRETIEEKRERAEELRERAAELEAEAEEKRE----AAAEAEEEAEEAREEVAELNSKLAELKERIESL-E 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 855 RSESAQTLLMKAARDREAMQTDLEVLKERYEKShaiQQKLQMERDdavtEVEILKEKLDKAlyASQKLIDEKDTSNKEFE 934
Cdd:PRK02224 593 RIRTLLAAIADAEDEIERLREKREALAELNDER---RERLAEKRE----RKRELEAEFDEA--RIEEAREDKERAEEYLE 663
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 935 KMLEKYDRAQNEIYRLQSRCDTAEADRARLEVEAERSGLAASKaREDLRKLQDESTRLQE 994
Cdd:PRK02224 664 QVEEKLDELREERDDLQAEIGAVENELEELEELRERREALENR-VEALEALYDEAEELES 722
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
977-1764 |
4.78e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 61.61 E-value: 4.78e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 977 KAREDLRKLQDESTRLQEACDRAALQLSRAKECED--NARSELEHS---------RDRFDKLQTDIRRAQGEKEHFQSEL 1045
Cdd:TIGR02168 183 RTRENLDRLEDILNELERQLKSLERQAEKAERYKElkAELRELELAllvlrleelREELEELQEELKEAEEELEELTAEL 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1046 ERVTYELERAHAAQTKASASVEAAKEEAAHYAVELEKMRDRYEKSQVELRKLQdtdtfgRETRRLKEENERLREKLDKTL 1125
Cdd:TIGR02168 263 QELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLE------RQLEELEAQLEELESKLDELA 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1126 MELETIRGKSQYESESFEKYKDKYEKIEMEVQNMESKLHETSLQLELSKGEVAKMLANQEKQRSELERAHIE-------R 1198
Cdd:TIGR02168 337 EELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARlerledrR 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1199 EKARDKHEKLLKEVDRLRLQQSSVSPGDPVRASTSSSSALSAGERQEIdRLRDRLEKALQSRDATELEAGRLAKELEKAQ 1278
Cdd:TIGR02168 417 ERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALE-ELREELEEAEQALDAAERELAQLQARLDSLE 495
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1279 MHLAKQQENTESTRIEF---ERMGAELGRLHDRLEkAEAEREALRQANRSGGAGAAPHPQLEKHVQKLESDVKQLAMERE 1355
Cdd:TIGR02168 496 RLQENLEGFSEGVKALLknqSGLSGILGVLSELIS-VDEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVT 574
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1356 QLVLQLEKSQEILMNFQKELQNAE------AELQKTREENRKLRNG-----HQVPPVAAPPAGPSPAEFQAMqkeIQTLQ 1424
Cdd:TIGR02168 575 FLPLDSIKGTEIQGNDREILKNIEgflgvaKDLVKFDPKLRKALSYllggvLVVDDLDNALELAKKLRPGYR---IVTLD 651
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1425 QKLQeseRALQAAGPQQAQAAAAAGASREEIEQWRKVIEQEKSRADMADKAAQEMHKRIQLMDQHIKDQHAQMQKMQQQM 1504
Cdd:TIGR02168 652 GDLV---RPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQI 728
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1505 QQQQQAAQQAVqqaaqqqqsaagaggadpKELEKVRGELQAACTERDRFQQQLELLVTELEKSKMSNQEQAKQLQTAQQQ 1584
Cdd:TIGR02168 729 SALRKDLARLE------------------AEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQ 790
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1585 VQQLQQQVQQLQQQMQQLQQAASAGAGATDVQRQQLEQQQKQLEEVRKQIDNQAKATEGERKIIDEQRKQIDAKRKDIEE 1664
Cdd:TIGR02168 791 IEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEE 870
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1665 KEKKMAEFDVQLRKRKEQMDQLEKSLQTQgggAAAAGELNKKLMDTQRQLEAC---VKELQNTKEEHK-KAATETERLLQ 1740
Cdd:TIGR02168 871 LESELEALLNERASLEEALALLRSELEEL---SEELRELESKRSELRRELEELrekLAQLELRLEGLEvRIDNLQERLSE 947
|
810 820
....*....|....*....|....
gi 2329048320 1741 LVQMSQEEQNAKEKTIMDLQQALK 1764
Cdd:TIGR02168 948 EYSLTLEEAEALENKIEDDEEEAR 971
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
256-618 |
8.82e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 60.85 E-value: 8.82e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 256 QMEAIYAENDHLQREISILRETIKDLECRVetqKQTLIARDESIKKLLEmlqakgmgKEEERQMFQQMQAMAQKQLDEFR 335
Cdd:TIGR02169 675 ELQRLRERLEGLKRELSSLQSELRRIENRL---DELSQELSDASRKIGE--------IEKEIEQLEQEEEKLKERLEELE 743
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 336 LEIQRRDQEILAMAAKMKTLEEQHQDYQRHIAVLKESLCAKEEHYNM------------LQTDVEEMRARLEEKNRLIEK 403
Cdd:TIGR02169 744 EDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHsripeiqaelskLEEEVSRIEARLREIEQKLNR 823
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 404 KTQGTLQTVQERNRLTSELTELKDHMDIKDRKISVLQRKIENLEDLLKEKDNQVDMARARLSamqahhsssegaltSLEE 483
Cdd:TIGR02169 824 LTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLG--------------DLKK 889
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 484 AIGDKEKQMAQLRDQRDRAEHEKQEERDLhereVADYKIKLRAAESEVEKLQTRLERAVTERERlEIKLEASQSELGKSK 563
Cdd:TIGR02169 890 ERDELEAQLRELERKIEELEAQIEKKRKR----LSELKAKLEALEEELSEIEDPKGEDEEIPEE-ELSLEDVQAELQRVE 964
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 2329048320 564 AELEKATCEMGRSSADWESTKQRiaRLELENERLKHDLERSQVLMQLEEQTTLHK 618
Cdd:TIGR02169 965 EEIRALEPVNMLAIQEYEEVLKR--LDELKEKRAKLEEERKAILERIEEYEKKKR 1017
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
217-764 |
9.18e-09 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 60.52 E-value: 9.18e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 217 INDQLKLLSTENQ-KQAMLVRQLEEELRLRMRQPNLEM-----------------QQQMEAIYAE----NDHLQREISIL 274
Cdd:pfam15921 243 VEDQLEALKSESQnKIELLLQQHQDRIEQLISEHEVEItgltekassarsqansiQSQLEIIQEQarnqNSMYMRQLSDL 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 275 RETIKDLECRVETQKQTLIARDESIKKLLEMLQAKGMGKEEERQMFQQMQAMAQKQLDEFRLEIQRRDQEILAMAAKMKT 354
Cdd:pfam15921 323 ESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKR 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 355 LEEQHQDYQRHIAVLKESLCAKEEHYNML-----------QTDVEEMRARLEEKNRLIEKKTQGTLQ---TVQERNRLTS 420
Cdd:pfam15921 403 LWDRDTGNSITIDHLRRELDDRNMEVQRLeallkamksecQGQMERQMAAIQGKNESLEKVSSLTAQlesTKEMLRKVVE 482
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 421 ELTELKDHMDIKDRKISVLQRKIENLEDLLKEKDNQVDMARAR--LSAMQAHHSSSEG--------ALTSLEEAIGDKEK 490
Cdd:pfam15921 483 ELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRvdLKLQELQHLKNEGdhlrnvqtECEALKLQMAEKDK 562
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 491 ----------QMAQLRDQRDRAEHEKQEERDLHEREVADYKIKLRaaesEVEKLQTRLERAVTErerleikLEASQSELG 560
Cdd:pfam15921 563 vieilrqqieNMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQ----EFKILKDKKDAKIRE-------LEARVSDLE 631
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 561 KSKAELEKATCEMGRSSADwesTKQRIARLELENERLKHDLErsqvlmQLEEQTTLHKTTFGRTTMTTSQELDRAQERAD 640
Cdd:pfam15921 632 LEKVKLVNAGSERLRAVKD---IKQERDQLLNEVKTSRNELN------SLSEDYEVLKRNFRNKSEEMETTTNKLKMQLK 702
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 641 KASAELRRTQAELRVTQGETEKRFSDAERAREEAAALQEKLEKSQGEVYRLKAKLENAQGEQESLRQELEKAQSGVSRIH 720
Cdd:pfam15921 703 SAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVA 782
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|.
gi 2329048320 721 ADRDRAFSEVE-------KIKEEMERTQATLGKSQLQHEKLQNSLDKAQNE 764
Cdd:pfam15921 783 TEKNKMAGELEvlrsqerRLKEKVANMEVALDKASLQFAECQDIIQRQEQE 833
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
478-1006 |
1.05e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 60.31 E-value: 1.05e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 478 LTSLEEAIGDKEKQMAQLRDQRDRAEHEKQEERDLHEREVADYKIKLRAAESEVEKLQTRLERAVTERERLEIKLEASQS 557
Cdd:COG4913 237 LERAHEALEDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEA 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 558 ELGKSKAELEKATCEMgrssadWESTKQRIARLELENERLKHDL-ERSQVLMQLEEQTtlhkTTFGRTTMTTSQELDRAQ 636
Cdd:COG4913 317 RLDALREELDELEAQI------RGNGGDRLEQLEREIERLERELeERERRRARLEALL----AALGLPLPASAEEFAALR 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 637 ERADKASAELRRTQAELRVTQGETEKRFSDaerareeaaaLQEKLEKSQGEVYRLKAKLENAQGEQESLRQELEKAqsgv 716
Cdd:COG4913 387 AEAAALLEALEEELEALEEALAEAEAALRD----------LRRELRELEAEIASLERRKSNIPARLLALRDALAEA---- 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 717 SRIHADRDRAFSEVEKIKEEMERTQ-----------------------------ATLGKSQLQHEKLQNSLDKAQNEV-- 765
Cdd:COG4913 453 LGLDEAELPFVGELIEVRPEEERWRgaiervlggfaltllvppehyaaalrwvnRLHLRGRLVYERVRTGLPDPERPRld 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 766 -DHLQDKLDKACTENRRLVLEKEKLTYDY---DNLQ--SQLDKALGQAARMQKERETLSLDTDRI-----------REKL 828
Cdd:COG4913 533 pDSLAGKLDFKPHPFRAWLEAELGRRFDYvcvDSPEelRRHPRAITRAGQVKGNGTRHEKDDRRRirsryvlgfdnRAKL 612
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 829 EKTQVQLGRIQKERDQFSDELETLKERSESAQTLLMKAARDREAMQTDLEVLKERYEKSHAIQQKLQMERDDAvtEVEIL 908
Cdd:COG4913 613 AALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAELERLDASSD--DLAAL 690
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 909 KEKLDKALYASQKLIDEKDTSNKEFEKMLEKYDRAQNEIYRLQSRCDTAEADRA---RLEVEAERSGLAASKAREDLRK- 984
Cdd:COG4913 691 EEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARlelRALLEERFAAALGDAVERELREn 770
|
570 580
....*....|....*....|..
gi 2329048320 985 LQDESTRLQEACDRAALQLSRA 1006
Cdd:COG4913 771 LEERIDALRARLNRAEEELERA 792
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
261-1036 |
1.32e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 60.13 E-value: 1.32e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 261 YAENDHLQREISILRETIKDLECRVETQKQTLIARDESIKKLLEMLQAKGMGKEEERQMFQQMQAMAQKQLDEFRLEIQR 340
Cdd:pfam15921 70 YPGKEHIERVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQN 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 341 RDQEILAmAAKMKtlEEQHQDYQRHIAVLKESLCAKEEHYNMLQT---DVEEMRARleeknRLIEKKTQGTLQTVQERNR 417
Cdd:pfam15921 150 TVHELEA-AKCLK--EDMLEDSNTQIEQLRKMMLSHEGVLQEIRSilvDFEEASGK-----KIYEHDSMSTMHFRSLGSA 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 418 LTSELTELkdhmdikDRKISVLQRKI----ENLEDLLKEKDNQVDMArarlsaMQAHHSSSEGALTSLEEAIGDKEKQMA 493
Cdd:pfam15921 222 ISKILREL-------DTEISYLKGRIfpveDQLEALKSESQNKIELL------LQQHQDRIEQLISEHEVEITGLTEKAS 288
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 494 QLRDQRDRAEHEKQEERDLHEREVADYKIKLRAAESEVEKLQTRLERAvteRERLEIKLEASQSELGKSKAELEKATCEM 573
Cdd:pfam15921 289 SARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREA---KRMYEDKIEELEKQLVLANSELTEARTER 365
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 574 GRSSadwestkQRIARLELENERLKHDLERSQVLMQLEEQttlHKTTFGRTTMTTSQELDRAQERADKASAELRRTQAEL 653
Cdd:pfam15921 366 DQFS-------QESGNLDDQLQKLLADLHKREKELSLEKE---QNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALL 435
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 654 RVTQGETEKRFSDAERAREEAAALQEKLEKSQGEVYRLKAKLENAQGEQESLRQELEKAQSGVSRIHADRDRAFSEVEKI 733
Cdd:pfam15921 436 KAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEAT 515
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 734 KEEME--RTQATLGKSQLQHEKlqnsldkaqNEVDHLQDkLDKACTENRRLVLEKEKLTYDYDNLQSQLDKALGQAAR-- 809
Cdd:pfam15921 516 NAEITklRSRVDLKLQELQHLK---------NEGDHLRN-VQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRta 585
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 810 --MQKERETLSLDTDRIREKLEKTQV----QLGRIQKERDQFSD-ELETLKERSESAQTLL----MKAARDR-------- 870
Cdd:pfam15921 586 gaMQVEKAQLEKEINDRRLELQEFKIlkdkKDAKIRELEARVSDlELEKVKLVNAGSERLRavkdIKQERDQllnevkts 665
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 871 ----EAMQTDLEVLKERY----EKSHAIQQKLQMERDDAVTEVEILKEKLD----------KALYASQKLIDEK----DT 928
Cdd:pfam15921 666 rnelNSLSEDYEVLKRNFrnksEEMETTTNKLKMQLKSAQSELEQTRNTLKsmegsdghamKVAMGMQKQITAKrgqiDA 745
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 929 SNKEFEKMLEKYDRAQNEIYRLQSRCDTAEADRARLEVEAERSGLAASKAREDLRKLQDESTRLQEACDRAALQLSrakE 1008
Cdd:pfam15921 746 LQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFA---E 822
|
810 820
....*....|....*....|....*...
gi 2329048320 1009 CEDNARSELEHSRDRFDKLQTDIRRAQG 1036
Cdd:pfam15921 823 CQDIIQRQEQESVRLKLQHTLDVKELQG 850
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
399-1217 |
1.52e-08 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 59.99 E-value: 1.52e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 399 RLIEKKTQGTLQTVQERNRLTSELTELKDHMDIKDRKISVLQRKIENLEDLLKEKDNQVDMARARLSAMQAHHSSSEGAL 478
Cdd:pfam02463 169 RKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRD 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 479 T----SLEEAIGDKEKQMAQLRDQRDRAEHEKQEERDLHEREVADYKIKLRAAESEVEKLQTRLERAVTERERLEIKLEA 554
Cdd:pfam02463 249 EqeeiESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEK 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 555 SQSELGKSKAELEKATCEMGRSSADWESTKQRIARLELENERLKHDLERSQVLMQLEEQTTLHKTTFGRTTMTTSQELDR 634
Cdd:pfam02463 329 ELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQ 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 635 AQERADKASAELRRTQAELRVTQGETEKRFSDAERAREEAAALQEKLEKSQGEVYRLKAKLENAQGEQESLRQELEKAQS 714
Cdd:pfam02463 409 LLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLEL 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 715 GVSRIHADRDRAFSEVEKIKEEMERTQATLGKSQLQHEKLQNSLDKAQNEVDHLQDKLDKACTENRRLVLEKEKLTYDYD 794
Cdd:pfam02463 489 LLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVR 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 795 NLQSQLDKALGQAARMQKERETL-SLDTDRIREKLEKTQVQLGRIQKERDQFSDELETLKERSESAQTLLMKAARDREAM 873
Cdd:pfam02463 569 ALTELPLGARKLRLLIPKLKLPLkSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGL 648
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 874 QTDLEVLKERYEKSHAIQQKLQMERDDAVTEVEILKEKLDKALYASQKLIDEKDTSNKEFEKMLEKYDRAQNEIYRLQSR 953
Cdd:pfam02463 649 RKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQ 728
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 954 CDTAEADRARLEVEAERSGLAASKAREDLRKLQDESTRLQEACDRAALQLSRAKECEDNARSELEH-SRDRFDKLQTDIR 1032
Cdd:pfam02463 729 EAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEkLKAQEEELRALEE 808
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1033 RAQGEKEHFQSELERVTYELERAHAAQTKASASVEAAKEEAAHYAVELEKMRDRYEKSQVELRKLQDTDTFGRETRRLKE 1112
Cdd:pfam02463 809 ELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDEL 888
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1113 ENERLREKLDKTLMELETIRGKSQYESESFEKYKDKYEKIEMEVQNMESKLHETSLQLELSKGEVAKMLANQEKQRSELE 1192
Cdd:pfam02463 889 ESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLA 968
|
810 820
....*....|....*....|....*
gi 2329048320 1193 RAHIEREKARDKHEKLLKEVDRLRL 1217
Cdd:pfam02463 969 KEELGKVNLMAIEEFEEKEERYNKD 993
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
631-1088 |
1.83e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 59.67 E-value: 1.83e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 631 ELDRAQERADKASAelRRTQAELRVTqgETEKRFSDAERAREEAAALQEKLEKSQGEVYRLKAKLENAQGEQESLRQELE 710
Cdd:PRK02224 221 EIERYEEQREQARE--TRDEADEVLE--EHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERD 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 711 KAQSGVSRIHADRDRAFSEVEKIKEEMERTQATLGKSQLQHEKLQNSLDKAQNEVDHLQDKLDKACTENRRLVLEKEKLT 790
Cdd:PRK02224 297 DLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAR 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 791 YDYDNLQSQLDKALGQAARMQKERETLSLDTDRIREKLEKTQVQLGRIQKERDQFSDELETLKERSESAQTLLmKAARDR 870
Cdd:PRK02224 377 EAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALL-EAGKCP 455
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 871 EAMQT-----DLEVLKERYEKshaiQQKLQMERDDAVTEVEILKEKLDKA----------------LYASQKLIDEK-DT 928
Cdd:PRK02224 456 ECGQPvegspHVETIEEDRER----VEELEAELEDLEEEVEEVEERLERAedlveaedrierleerREDLEELIAERrET 531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 929 SNKEFEKMLEKYDRAQN-----EIYRLQSRCDTAEADRARLEVEAERSGLAASKAR----EDLRKLQDESTRLQEACDRA 999
Cdd:PRK02224 532 IEEKRERAEELRERAAEleaeaEEKREAAAEAEEEAEEAREEVAELNSKLAELKERieslERIRTLLAAIADAEDEIERL 611
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1000 ALQLSRAKECEDNARSELEHSRDRFDKLQTD-----IRRAQGEKEHFQSELERVTYELERAHAAQTKASASVEAAKEEAA 1074
Cdd:PRK02224 612 REKREALAELNDERRERLAEKRERKRELEAEfdearIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELE 691
|
490
....*....|....
gi 2329048320 1075 hyavELEKMRDRYE 1088
Cdd:PRK02224 692 ----ELEELRERRE 701
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1148-1723 |
2.88e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.18 E-value: 2.88e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1148 KYEKIEMEVQNMESKLHETSLQLELSKGEVAKMLANQEKQRSELERAHIEREKARDKHEKLLKEVDRLRLQQssvspgDP 1227
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDI------AR 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1228 VRASTSSSSALSAGERQEIDRLRDRLEKALQSRDATELEAGRLAKELEKAQMHLAKQQENTESTRIEFERMGAELGRLHD 1307
Cdd:COG1196 307 LEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAE 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1308 RLEKAEAEREALRQANRsggagaaphpQLEKHVQKLESDVKQLAMEREQLVLQLEKSQEILMNFQKELQNAEAELQKTRE 1387
Cdd:COG1196 387 ELLEALRAAAELAAQLE----------ELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEE 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1388 ENRKLRnghqvppvaaPPAGPSPAEFQAMQKEIQTLQQKLQESERALQAAGPQQAQAAAAAGASRE--EIEQWRKVIEQE 1465
Cdd:COG1196 457 EEEALL----------ELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAalLLAGLRGLAGAV 526
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1466 KSRADMADKAAQEMHKRIQLMDQHIKDQHAQMQKMQQQMQQQQQAAQQAVQQAAQQQQSAAGAGGADPKELEKVRGELQA 1545
Cdd:COG1196 527 AVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVAS 606
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1546 ACTERDRFQQQLELLVTElekskmSNQEQAKQLQTAQQQVQQLQQQVQQLQQQMQQLQQAASAGAGATDVQRQQLEQQQK 1625
Cdd:COG1196 607 DLREADARYYVLGDTLLG------RTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAE 680
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1626 QLEEVRKQIDNQAKATEGERKIIDEQRKQIDAKRKDIEEKEKKMAEFDVQLRKRKEQMDQLEKSLQTQGGGAAAAGELNK 1705
Cdd:COG1196 681 LEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPP 760
|
570
....*....|....*...
gi 2329048320 1706 KLMDTQRQLeacvKELQN 1723
Cdd:COG1196 761 DLEELEREL----ERLER 774
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
343-916 |
3.09e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 58.77 E-value: 3.09e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 343 QEILAMAAKMKTLEEQHQDYQRHIAvLKESLCAKEEHYNML-----QTDVEEMRARLEEKNRLIEKKTQGTLQTVQERNR 417
Cdd:COG4913 242 EALEDAREQIELLEPIRELAERYAA-ARERLAELEYLRAALrlwfaQRRLELLEAELEELRAELARLEAELERLEARLDA 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 418 LTSELTELK-DHMDIKDRKISVLQRKIENLEDLLKEKDNQVDMARARLSAMQAHHSSSEGALTSLEEAIgdkekqmAQLR 496
Cdd:COG4913 321 LREELDELEaQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEA-------AALL 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 497 DQRDRAEHEKQEERDLHEREVADYKIKLRAAESEVEKLQTrleRAVTERERLEIKLEASQSELGKSKAELEKAtCE---M 573
Cdd:COG4913 394 EALEEELEALEEALAEAEAALRDLRRELRELEAEIASLER---RKSNIPARLLALRDALAEALGLDEAELPFV-GElieV 469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 574 GRSSADWESTKqriarlelenERLKHDLERSQVLmqleeqttlhkttfgrttmttsqeldrAQERADKASAELRRTQAEL 653
Cdd:COG4913 470 RPEEERWRGAI----------ERVLGGFALTLLV---------------------------PPEHYAAALRWVNRLHLRG 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 654 RVTQGETEKRFSDAERAREEAAALQEKLEKSQGEVYR-LKAKLENAQG-----EQESLRQElEKA--------QSGVSRI 719
Cdd:COG4913 513 RLVYERVRTGLPDPERPRLDPDSLAGKLDFKPHPFRAwLEAELGRRFDyvcvdSPEELRRH-PRAitragqvkGNGTRHE 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 720 HADRDRAFS-----------------EVEKIKEEMERTQATLGKSQLQHEKLQNSLDKAQNEVDHLQDKLDKACTENRRL 782
Cdd:COG4913 592 KDDRRRIRSryvlgfdnraklaaleaELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIA 671
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 783 VLEKEKltydydnlqSQLDKALGQAARMQKERETLSLDTDRIREKLEKTQVQLGRIQKERDQFSDELETLKERSESAQTL 862
Cdd:COG4913 672 ELEAEL---------ERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDL 742
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....
gi 2329048320 863 LMKAARDREAMQTDLEVLKERYEKshaIQQKLQMERDDAVTEVEILKEKLDKAL 916
Cdd:COG4913 743 ARLELRALLEERFAAALGDAVERE---LRENLEERIDALRARLNRAEEELERAM 793
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
331-903 |
5.09e-08 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 57.99 E-value: 5.09e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 331 LDEFRLEIQRRDQEILAMAAKMKTLEEQHQDYQRHIAVLKESLCAKEEHYNMLQTDVEEMRARLEEKNRLIE--KKTQGT 408
Cdd:PRK01156 185 IDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYESeiKTAESD 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 409 LQTVQERNRLTSELTElkDHMDIKDRKISVLQRKIENLEDLLKEKDNQVDMArarlsamqahhSSSEGALTSLEEAIgdk 488
Cdd:PRK01156 265 LSMELEKNNYYKELEE--RHMKIINDPVYKNRNYINDYFKYKNDIENKKQIL-----------SNIDAEINKYHAII--- 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 489 eKQMAQLRDQRDRAEHEKQEERDL-HER-EVADYKIKLRAAESEVEKLQTRLERAVTERERLEIKLEASQSELGKSKAEL 566
Cdd:PRK01156 329 -KKLSVLQKDYNDYIKKKSRYDDLnNQIlELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAI 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 567 EKATCEMGRSSADWEStkqRIARLELENERLK-HDLERSQVLMQLEEQ-------TTLHKTTFGRTTMTTSQELDRAQER 638
Cdd:PRK01156 408 KKELNEINVKLQDISS---KVSSLNQRIRALReNLDELSRNMEMLNGQsvcpvcgTTLGEEKSNHIINHYNEKKSRLEEK 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 639 ADKASAELRRTQAELR--------VTQGETEKRFSDAERAREEAAALqEKLEKSQGEVYRLKAKLENAQGEQESL----- 705
Cdd:PRK01156 485 IREIEIEVKDIDEKIVdlkkrkeyLESEEINKSINEYNKIESARADL-EDIKIKINELKDKHDKYEEIKNRYKSLkledl 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 706 ---RQELEKAQSGVSRIHADRDRA-FSEVEK-IKEEMERTQATLGKSQLQHEKLQNSLDKAQNEVDHLQDKLDKAcTENR 780
Cdd:PRK01156 564 dskRTSWLNALAVISLIDIETNRSrSNEIKKqLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEI-QENK 642
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 781 RLVlekEKLTYDYDNLQSQLDKALGqaarMQKERETLSLDTDRIREKLEKTQVQLGRIQKERDQFSDELETLKERSESAQ 860
Cdd:PRK01156 643 ILI---EKLRGKIDNYKKQIAEIDS----IIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELS 715
|
570 580 590 600
....*....|....*....|....*....|....*....|....*....
gi 2329048320 861 TLLMKAARDREAMQT------DLEVLKERYEKShAIQQKLQMERDDAVT 903
Cdd:PRK01156 716 DRINDINETLESMKKikkaigDLKRLREAFDKS-GVPAMIRKSASQAMT 763
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
722-1323 |
5.72e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 58.00 E-value: 5.72e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 722 DRDRAFSEVEKIKEEMErtqatlgksqlQHEKLQNSLDKAQNEVDHLQ------DKLDKACTENRRLVLEKEKLTYD--- 792
Cdd:COG4913 219 EEPDTFEAADALVEHFD-----------DLERAHEALEDAREQIELLEpirelaERYAAARERLAELEYLRAALRLWfaq 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 793 --YDNLQSQLDKALGQAARMQKERETLSLDTDRIREKLEKTQVQLgriqkeRDQFSDELETLKERSESAQTLLMKAARDR 870
Cdd:COG4913 288 rrLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQI------RGNGGDRLEQLEREIERLERELEERERRR 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 871 EAMQTDLEVLKERYEKSHAIQQKLQMERDDAVTEVEILKEKLDKALYASQKlidekdtsnkEFEKMLEKYDRAQNEIYRL 950
Cdd:COG4913 362 ARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEA----------ALRDLRRELRELEAEIASL 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 951 QSRCDT--AEADRARLEVEAersglAASKAREDLR------KLQDESTRLQEACDRA----ALQLSRAKECEDNARSELE 1018
Cdd:COG4913 432 ERRKSNipARLLALRDALAE-----ALGLDEAELPfvgeliEVRPEEERWRGAIERVlggfALTLLVPPEHYAAALRWVN 506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1019 HSRDR----FDKLQTDIRRAQGEKEHFQSELERVTYELERAHA------AQTKASASVEAAKE-EAAHYAVELEKM---- 1083
Cdd:COG4913 507 RLHLRgrlvYERVRTGLPDPERPRLDPDSLAGKLDFKPHPFRAwleaelGRRFDYVCVDSPEElRRHPRAITRAGQvkgn 586
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1084 RDRYEKsqvELRKLQDTD-TFGRETRRLKEENERLREKLDKTLMELETIRGKSQYESESFEKYKDKYEKIE--------- 1153
Cdd:COG4913 587 GTRHEK---DDRRRIRSRyVLGFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAeyswdeidv 663
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1154 MEVQNMESKLHETSLQLELSKGEVAKMLANQEKQRSELERAHIEREKARDKHEKLLKEVDRLRLQQSSVSPGDPVRASTS 1233
Cdd:COG4913 664 ASAEREIAELEAELERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLA 743
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1234 SSSALSAGERQ----EIDRLRDRLEKALQSR-DATELEAGRLAKELEKAQM-HLAKQQENTESTRIEFERMG---AELGR 1304
Cdd:COG4913 744 RLELRALLEERfaaaLGDAVERELRENLEERiDALRARLNRAEEELERAMRaFNREWPAETADLDADLESLPeylALLDR 823
|
650 660
....*....|....*....|.
gi 2329048320 1305 L-HDRLEKAEAE-REALRQAN 1323
Cdd:COG4913 824 LeEDGLPEYEERfKELLNENS 844
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1084-1664 |
1.25e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.87 E-value: 1.25e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1084 RDRYEKSQVELRKLQDtdtfgretRRLKEENERLREKLDKTLMELETIRGKSQYESESFEKYKDKYEKIEMEVQNMESKL 1163
Cdd:COG1196 219 KEELKELEAELLLLKL--------RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEE 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1164 HETSLQLELSKGEVAKMLANQEKQRSELERAHIEREKARDKHEKLLKEVDRLRLQQSSVspgDPVRASTSSSSALSAGER 1243
Cdd:COG1196 291 YELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEA---EEELEEAEAELAEAEEAL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1244 QEIDRLRDRLEKALQSRDATELEAGRLAKELEKAQMHLAKQQENTESTRiefERMGAELGRLHDRLEKAEAEREALRQAN 1323
Cdd:COG1196 368 LEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERL---ERLEEELEELEEALAELEEEEEEEEEAL 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1324 RSGGAGAAPHPQLEKHVQKLESDVKQLAMEREQLVLQLEKSQEILMNFQKELQNAEAELQKTREENRKLRNGHQVPPVAA 1403
Cdd:COG1196 445 EEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAG 524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1404 PPAGPSPAEFQAMQKEIQTLQQKLQESERALQAAGPQQAQAAAAAGASREEIeqwrkvIEQEKSRADMADKAAQEMHKRI 1483
Cdd:COG1196 525 AVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATF------LPLDKIRARAALAAALARGAIG 598
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1484 QLMDQHIKDQHAQMQKMQQQMQQQQQAAQQAVQQAAQQQQSAAGAGGADPKELEKVRGELQAACTERDRFQQQLELLVTE 1563
Cdd:COG1196 599 AAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAE 678
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1564 LEKSKMSNQEQAKQLQTAQQQVQQLQQQVQQLQQQMQQLQQAASAGAGATDVQRQQLEQQQKQLEEvRKQIDNQAKATEG 1643
Cdd:COG1196 679 AELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEE-EELLEEEALEELP 757
|
570 580
....*....|....*....|.
gi 2329048320 1644 ERKIIDEQRKQIDAKRKDIEE 1664
Cdd:COG1196 758 EPPDLEELERELERLEREIEA 778
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
472-1222 |
1.76e-07 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 56.59 E-value: 1.76e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 472 SSSEGALTSLEEAIGDKEKQMAQLRDQRDRAEHEKQEERDLHEREVADYKIKLRAAESEVEKLQTRLERAVTERERLEIK 551
Cdd:TIGR00606 227 TSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQGTDEQLNDL 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 552 LEASQSELGKSKAELEKATCEMGRSSADWESTKQ-------RIARLELENER-----LKHDLERSQVLMQLEEQTTLHKT 619
Cdd:TIGR00606 307 YHNHQRTVREKERELVDCQRELEKLNKERRLLNQektellvEQGRLQLQADRhqehiRARDSLIQSLATRLELDGFERGP 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 620 TFGRTTMTTSQELDRAQERADKASAEL-RRTQAELRVTQGETEKRFSDAERAREEAAALQEKLEKSQGEVYRLKAKLENA 698
Cdd:TIGR00606 387 FSERQIKNFHTLVIERQEDEAKTAAQLcADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQL 466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 699 QGEQESLrqeLEKAQsgvSRIHADRDRAFSEVEKIKEEMERTQATLGKSQLQHEKLQNSLDKAQNEVDHlqdkldKACTE 778
Cdd:TIGR00606 467 EGSSDRI---LELDQ---ELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNH------HTTTR 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 779 NRRLVLEKEKLTYD---YDNLQSQLDKALGQAA------RMQKERETLSLDTDRIREKLEKTQVQLGRIQKERDQFSDEL 849
Cdd:TIGR00606 535 TQMEMLTKDKMDKDeqiRKIKSRHSDELTSLLGyfpnkkQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNEL 614
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 850 ETLKERSESAQTLLMKAArDREAMQTDLEVLKERYEKSHAIQQKLQMERDDAVTEVEILKEKLDKALYASQKLIDEKDTS 929
Cdd:TIGR00606 615 ESKEEQLSSYEDKLFDVC-GSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAEL 693
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 930 NKEFEKMLEKYDRAQNEIYRLQSRCDTAEADRARLEVEAERSGLAASKAREDLRKLQDESTRLQEACDRAALQLSRAKEC 1009
Cdd:TIGR00606 694 QEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETL 773
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1010 EDNARSELEHSRDrfdkLQTDIrraqGEKEHFQSELErvtyELERAHAAQtkasasveAAKEEAAHYAVELEKMRDRYEK 1089
Cdd:TIGR00606 774 LGTIMPEEESAKV----CLTDV----TIMERFQMELK----DVERKIAQQ--------AAKLQGSDLDRTVQQVNQEKQE 833
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1090 SQVELRKLQDTdtfGRETRRLKEENERLREKLDKTLMELETIRGKSQYESESFEKYKDKYEKIEMEVQNMESKLHETSLQ 1169
Cdd:TIGR00606 834 KQHELDTVVSK---IELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQ 910
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|...
gi 2329048320 1170 LELSKGEVAKMlanQEKQRSELERAHIEREKARDKHEKLLKEVDRLRLQQSSV 1222
Cdd:TIGR00606 911 DSPLETFLEKD---QQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDI 960
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
213-993 |
2.01e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 56.28 E-value: 2.01e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 213 KYSLINDQLKLLSTENQKQAMLvrqleeELRLRMRQPNLEMQQQMEAIYAEndhLQREISILRETIKDLECRVETQKQTL 292
Cdd:pfam15921 109 RQSVIDLQTKLQEMQMERDAMA------DIRRRESQSQEDLRNQLQNTVHE---LEAAKCLKEDMLEDSNTQIEQLRKMM 179
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 293 IARDESIKKLLEML----QAKGMGKEEERQM----FQQMQAMAQKQLDEFRLEIQRRDQEILAMAAKMKTLEEQHQD--- 361
Cdd:pfam15921 180 LSHEGVLQEIRSILvdfeEASGKKIYEHDSMstmhFRSLGSAISKILRELDTEISYLKGRIFPVEDQLEALKSESQNkie 259
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 362 --YQRHIAVLKESLCAKEEHYNMLQTDVEEMRARleeknrliEKKTQGTLQTVQE--RNRLTSELTELKDHMDIKDRKIS 437
Cdd:pfam15921 260 llLQQHQDRIEQLISEHEVEITGLTEKASSARSQ--------ANSIQSQLEIIQEqaRNQNSMYMRQLSDLESTVSQLRS 331
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 438 VLQRKIENLEDLLKEKDNQVDMARARLSAMQAHHSSSEGALTSLEEAIgdkEKQMAQLRDQRDRAEHEKQEERDLHEREV 517
Cdd:pfam15921 332 ELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQL---QKLLADLHKREKELSLEKEQNKRLWDRDT 408
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 518 ADykiklraaESEVEKLQTRLERAVTERERLEIKLEASQSElgkSKAELEKATCEMGRSSADWESTKQRIARLELENERL 597
Cdd:pfam15921 409 GN--------SITIDHLRRELDDRNMEVQRLEALLKAMKSE---CQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEML 477
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 598 KHDLERsqvlMQLEEQTTLHKTTFGRTTMTTSQELDRAQERADKASAELRrTQAELRVTQGETEKRFSDaerareeaaal 677
Cdd:pfam15921 478 RKVVEE----LTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLR-SRVDLKLQELQHLKNEGD----------- 541
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 678 qeKLEKSQGEVYRLKAKLENAQGEQESLRQELEKAQSGVSRihADRDRAFSEVEKIKEEMErtqatLGKSQLQHEKLQNS 757
Cdd:pfam15921 542 --HLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQ--HGRTAGAMQVEKAQLEKE-----INDRRLELQEFKIL 612
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 758 LDKAQNEVDHLQDKLDKACTENRRLVLEKEKLTYDYDNLQSQLDKALGQAARMQKERETLSLDTD----RIREKLEKTQV 833
Cdd:pfam15921 613 KDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEvlkrNFRNKSEEMET 692
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 834 QLGRIQKERDQFSDELEtlkersESAQTLLMKAARDREAMQTDLEVLKERYEKSHAIqqklqmerDDAVTEVEILKEKLD 913
Cdd:pfam15921 693 TTNKLKMQLKSAQSELE------QTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQI--------DALQSKIQFLEEAMT 758
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 914 KALYASQKLIDEKDTSNKEFEKMLEKYDRAQNEIYRLQSRCDTAEADRARLEVEAERSGLAASKAREDLRKLQDESTRLQ 993
Cdd:pfam15921 759 NANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQESVRLK 838
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
197-841 |
2.62e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.92 E-value: 2.62e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 197 SPELKKERALRKEESAKyslindqlkllSTENQKQAMLVRQLEEELRLR-MRQPNLEMQQQMEAIYAENDHLQREISILR 275
Cdd:PTZ00121 1190 AEELRKAEDARKAEAAR-----------KAEEERKAEEARKAEDAKKAEaVKKAEEAKKDAEEAKKAEEERNNEEIRKFE 1258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 276 ETIKDLECRVETQKQTLIARD-ESIKKLLEMLQAKGMGKEEERQMFQQMQAMAQKQLDEFRLEIQRRDQEILAMAAKMKT 354
Cdd:PTZ00121 1259 EARMAHFARRQAAIKAEEARKaDELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKA 1338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 355 LEEQHQDyqrHIAVLKESLCAKEEHYNMLQTDVEEMRARLEEKNRLIEKKTQGTLQTVQERNRLTSELTELKDHMdikdR 434
Cdd:PTZ00121 1339 EEAKKAA---EAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADEL----K 1411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 435 KISVLQRKIENLEDLLKEKDNQVDMARARLSAMQAHHSSSEGALTSLEEAIGDKEKQMAQLRDQRDRAEHEKQEERDLHE 514
Cdd:PTZ00121 1412 KAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKK 1491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 515 REVADYKIKLRAAESEVEKLQTRLERAVTERERLEIKL--EASQSELGKSKAELEKATCEMGRSSADWESTKQRIARLEL 592
Cdd:PTZ00121 1492 AEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKaeEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKK 1571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 593 ENERLKHDLERSQVLMQLEEQTTLHKTTFGRTTMTTSQELDRAQERADKASAELRRTQAELRVTQGETEKrfsdaerare 672
Cdd:PTZ00121 1572 AEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKK---------- 1641
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 673 eaaalqEKLEKSQGEVYRLKAKLENAQGEQESLRQELEKAQSGVSRIHADRDRAFSEVEKIKEEMERTQATLGKSQLQHE 752
Cdd:PTZ00121 1642 ------EAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEK 1715
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 753 KLQNSLDKAQNEVDHLQDKLDKACTENRRLVLEKEKLTYDYDNLQSQLDKALGQAARMQKERETLSldTDRIREKLEKTQ 832
Cdd:PTZ00121 1716 KKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVI--EEELDEEDEKRR 1793
|
....*....
gi 2329048320 833 VQLGRIQKE 841
Cdd:PTZ00121 1794 MEVDKKIKD 1802
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
156-912 |
4.23e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 55.36 E-value: 4.23e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 156 YLGDLQHQNTDLQRELGNLKRELELTNQKLGSSMHSIKTFWSPELKKERALRKEESAKYSLIND----QLKLLSTENQKQ 231
Cdd:pfam02463 231 YLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEeeelKSELLKLERRKV 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 232 AMLVRQLEEELRLRMRQPNLEMQQQ-MEAIYAENDHLQREISILRETIKDLECRVETQKQTLIARDESIKKLLEMLQAKG 310
Cdd:pfam02463 311 DDEEKLKESEKEKKKAEKELKKEKEeIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAA 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 311 MGKEEERQMFQQMQAMAQKQLDEFRLEIQRRDQEILAMAAKMKTLEEQHQDYQRHIAVLKESLCAKEEHYNMLQTDVEEM 390
Cdd:pfam02463 391 KLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKS 470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 391 RARLEEKNRLIEKKTQGTLQTVQE-----------RNRLTSELTELKDHMDIKDRKISVLQRKIENLEDLLKEKDNQVDM 459
Cdd:pfam02463 471 EDLLKETQLVKLQEQLELLLSRQKleersqkeskaRSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVI 550
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 460 ARARLSAMQAHHSSSEgaLTSLEEAIGDKEKQMAQLRDQRDRAEHEKQEERDLHEREVADYKIKLRAAESEVEKLQTRLE 539
Cdd:pfam02463 551 VEVSATADEVEERQKL--VRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGI 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 540 RAVTERERLEIKLEASQSELGKSKAELEKATCEMGRSSADWESTKQRIARLELENER---LKHDLERSQVLMQLEEQTTL 616
Cdd:pfam02463 629 LKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAeseLAKEEILRRQLEIKKKEQRE 708
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 617 HKTTFGRTTMTTSQELDRAQERADKASAELRRTQAELRVTQGETEKRFSDAERAREEAAALQEKLEKSqgEVYRLKAKLE 696
Cdd:pfam02463 709 KEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKEL--AEEREKTEKL 786
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 697 NAQGEQESLRQELEKAQSGVSRIHADRDRAFSEVEKIKEEMERTQATLGKSQLQHEKLQNSLDKAQNEVDHLQDKLDKAC 776
Cdd:pfam02463 787 KVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKE 866
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 777 TENRRLVLEKEKLTYDYDNLQSQLDKALGQAARMQKERETLSLDTDRIREKLEKTQVQLGRIQ----------------K 840
Cdd:pfam02463 867 ELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEIllkyeeepeellleeaD 946
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2329048320 841 ERDQFSDELETLKERSESAQTLLMKAARDREAMQTDLEVLKERYEKSHAIQQKLQMERDDAVTEVEILKEKL 912
Cdd:pfam02463 947 EKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQR 1018
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1030-1764 |
4.71e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.15 E-value: 4.71e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1030 DIRRAQGEKEHFQSELERVTYELERAHAAQTKASASVEAAKEEAAHYAVELEKMRDRYEKSQVELRKLQDTDTFGRETRR 1109
Cdd:PTZ00121 1086 DNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARK 1165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1110 LKEENERLREKLDKTLMELETIRgksqyESESFEKYKDKYEKIEMEVQNMESKLHETSLQLELSKGEVAKMLANQEKQRS 1189
Cdd:PTZ00121 1166 AEEARKAEDAKKAEAARKAEEVR-----KAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAE 1240
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1190 ELERAHIEREKARDKHEKLLKEVDRLRLQQSSVS----PGDPVRASTSSSSALSAGERQEIDRLRDRLEKALQSRDATEL 1265
Cdd:PTZ00121 1241 EAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAeearKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEA 1320
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1266 EagrlaKELEKAQMHLAKQQENTESTRIEFERMGAELGRLHDRLEKAEAEREALRQANRSGGAGAAPHPQLEKHVQKLEs 1345
Cdd:PTZ00121 1321 K-----KKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKAD- 1394
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1346 DVKQLAMEREQLVLQLEKSQEILMNFQKELQNAEA-----ELQKTREENRKlrnGHQVPPVAAPPAGPSPAEFQAMQKEI 1420
Cdd:PTZ00121 1395 EAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEkkkadEAKKKAEEAKK---ADEAKKKAEEAKKAEEAKKKAEEAKK 1471
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1421 QTLQQKLQESERALQAAGPQQAQAAAAAGASREEIEQWRKVIE----QEKSRADMADKAaqEMHKRIQLMDQHIKDQHAQ 1496
Cdd:PTZ00121 1472 ADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEakkaEEAKKADEAKKA--EEAKKADEAKKAEEKKKAD 1549
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1497 MQKMQQQMQQQQQAAQQAVQQAAQQQQSAAGAGGADPKELEKVRGELQAACTERDRFQQQLELLVTELEKSKmsnQEQAK 1576
Cdd:PTZ00121 1550 ELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIK---AEELK 1626
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1577 QLQTAQQQVQQLQQQVQQLQQQMQQLQQAASAGAGATDVQRQQLEQQQKQLEEVRKQIDNQAKATEGERKIIDEQRKQID 1656
Cdd:PTZ00121 1627 KAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEE 1706
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1657 AKRKDIEEKekkmaefdvqlrKRKEQMDQLEKSLQTQGGGAAAAGELNKKLMDTQRQLEACVKELQNTKEEHKKAATETE 1736
Cdd:PTZ00121 1707 LKKKEAEEK------------KKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIR 1774
|
730 740
....*....|....*....|....*...
gi 2329048320 1737 RLLQLVqMSQEEQNAKEKTIMDLQQALK 1764
Cdd:PTZ00121 1775 KEKEAV-IEEELDEEDEKRRMEVDKKIK 1801
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
252-774 |
5.97e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 54.68 E-value: 5.97e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 252 EMQQQMEAIYAENDHLQREISILRETIKDLECRVETQKQTLiARDESIKKLLEMLQAKGMGKEEERQMFQQMQAMAQKQL 331
Cdd:PRK03918 197 EKEKELEEVLREINEISSELPELREELEKLEKEVKELEELK-EEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEI 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 332 DEFRlEIQRRDQEILAMAAKMKTLEEQHQDYQRHIAVLKESLCAKEEHYNMLQTDVEEMRARLEEKNRLIEKK--TQGTL 409
Cdd:PRK03918 276 EELE-EKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLkeLEKRL 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 410 QTVQERNRLTSELTELKDHMD-----IKDRKISVLQRKIENLEDLLKEKDNQVDMARARLSAMQAHHSSSEGALTSLEEA 484
Cdd:PRK03918 355 EELEERHELYEEAKAKKEELErlkkrLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKA 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 485 IGDKEKQMAQLrdqrdrAEHEKQEERDLHEREVADYKIKLRAAESEVEKLQTRLER--AVTERERLEIKLEASQSELGKS 562
Cdd:PRK03918 435 KGKCPVCGREL------TEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELREleKVLKKESELIKLKELAEQLKEL 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 563 KAELEKATCE-MGRSSADWESTKQRIARLELENERLKHDLERsqvLMQLEEQTTLHKTTFGRTTMTTSQELDRAQERADK 641
Cdd:PRK03918 509 EEKLKKYNLEeLEKKAEEYEKLKEKLIKLKGEIKSLKKELEK---LEELKKKLAELEKKLDELEEELAELLKELEELGFE 585
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 642 ASAELRRTQAELRvtqgETEKRFSDAERAREEAAALQEKLEKSQGEVYRLKAKLENAQGEQESLRQELEKAQSGVSRiha 721
Cdd:PRK03918 586 SVEELEERLKELE----PFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSE--- 658
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|...
gi 2329048320 722 drdrafSEVEKIKEEMERTQATLGKSQLQHEKLQNSLDKAQNEVDHLQDKLDK 774
Cdd:PRK03918 659 ------EEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEE 705
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
266-856 |
7.76e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 54.30 E-value: 7.76e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 266 HLQREISILRETIK---DLECRVETQKQTLIARDESIKKLLEMLQAKgmgkEEERQMFQQMQAMaqkqLDEFRLEIQRRD 342
Cdd:PRK03918 173 EIKRRIERLEKFIKrteNIEELIKEKEKELEEVLREINEISSELPEL----REELEKLEKEVKE----LEELKEEIEELE 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 343 QEILAMAAKMKTLEEQHQDYQRHIAVLKESLcakeehynmlqTDVEEMRARLEEknrlIEKKTQGTLQTVQERNRLTSEL 422
Cdd:PRK03918 245 KELESLEGSKRKLEEKIRELEERIEELKKEI-----------EELEEKVKELKE----LKEKAEEYIKLSEFYEEYLDEL 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 423 TELKDHMDIKDRKISVLQRKIENLEdllkEKDNQVDMARARLSAMQAHHSSSEGALTSLEEAigdkEKQMAQLRDQRDRA 502
Cdd:PRK03918 310 REIEKRLSRLEEEINGIEERIKELE----EKEERLEELKKKLKELEKRLEELEERHELYEEA----KAKKEELERLKKRL 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 503 EHEKQEERDLHEREVADYKIKLRAAESEVEKLQTRLERAVTERERLEIKLEASQSELGKSKAEL---------EKATCEM 573
Cdd:PRK03918 382 TGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELteehrkellEEYTAEL 461
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 574 GRSSADWESTKQRIARLELENERLKHDLERSQVLMQLEEQTTLHKTTFGRTTMTTSQELDRAQERADKASAELRRTQAEL 653
Cdd:PRK03918 462 KRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEI 541
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 654 RVTQGETEKrfsdAERAREEAAALQEKLEKSQGEVYRLKAKLEN----AQGEQESLRQELEKAQsgvsRIHADRDRAFSE 729
Cdd:PRK03918 542 KSLKKELEK----LEELKKKLAELEKKLDELEEELAELLKELEElgfeSVEELEERLKELEPFY----NEYLELKDAEKE 613
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 730 VEKIKEEMERTQATLGKSQLQHEKLQNSLDKAQNEVDHLQDKLDKACTEN-RRLVLEKEKLTYDYDNLQSQLDKALGQAA 808
Cdd:PRK03918 614 LEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEElREEYLELSRELAGLRAELEELEKRREEIK 693
|
570 580 590 600
....*....|....*....|....*....|....*....|....*...
gi 2329048320 809 RMQKERETLSLDTDRIREKLEKTQVQLGRIQKERDQFSDELETLKERS 856
Cdd:PRK03918 694 KTLEKLKEELEEREKAKKELEKLEKALERVEELREKVKKYKALLKERA 741
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
432-950 |
9.59e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 53.91 E-value: 9.59e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 432 KDRKISVLqRKIENLEDLLKEKDNQVDMARARLSAMQAHHSSSEGALTSLEEAIGDKEKQMAQLRDQRDRAEHEKQEERD 511
Cdd:PRK03918 199 EKELEEVL-REINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEE 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 512 LHEREVADYKIKLRAAE-SEVEKLQTRLERAVTERERLEIKLEASQSELGKSKAELEKATCEMGRSSADWESTKQRIARL 590
Cdd:PRK03918 278 LEEKVKELKELKEKAEEyIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEEL 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 591 ElenERLKHDLERSQVLMQLEEQTTLHKTTFGRTTMTTSQELDRAQERADKASAELRRTQAELRVTQGETEKRFSDAERA 670
Cdd:PRK03918 358 E---ERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKA 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 671 REE---------AAALQEKLEKSQGEVYRLKAKLENAQGEQESLRQE---LEKAQSGVSRIHADRDRAfSEVEKIKEEME 738
Cdd:PRK03918 435 KGKcpvcgreltEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKElreLEKVLKKESELIKLKELA-EQLKELEEKLK 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 739 RTQA-TLGKSQLQHEKLQNSLDKAQNEVDHLQDKLDKACTENRRLVLEKEKLtydyDNLQSQLDKALGQAARMQKERETL 817
Cdd:PRK03918 514 KYNLeELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKL----DELEEELAELLKELEELGFESVEE 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 818 SLDTDRIREKLEKTQVQLGRIQKERDQFSDELETLKERSESAQTLLMKAARDREAMQTDLEVLK-----ERYEKSHAIQQ 892
Cdd:PRK03918 590 LEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEkkyseEEYEELREEYL 669
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*...
gi 2329048320 893 KLQMERDDAVTEVEILKEKLDKALYASQKLIDEKDTSnKEFEKMLEKYDRAQNEIYRL 950
Cdd:PRK03918 670 ELSRELAGLRAELEELEKRREEIKKTLEKLKEELEER-EKAKKELEKLEKALERVEEL 726
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
810-1705 |
1.24e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 53.82 E-value: 1.24e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 810 MQKERETLSLDTD----RIREKLEKTQVQLGRIQKERDQFSDELETLKERSESaqTLLMKAARDREAMQTDLEVLKERYE 885
Cdd:pfam02463 149 MMKPERRLEIEEEaagsRLKRKKKEALKKLIEETENLAELIIDLEELKLQELK--LKEQAKKALEYYQLKEKLELEEEYL 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 886 KSHAIQQKLQMERDDAVTEVEILKEKLDKALYASQKLIDEKDTSNKEFEKMLEKYDRAQNEIYRLQSRCDTAEADRARLE 965
Cdd:pfam02463 227 LYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLE 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 966 VEAERSGLAASKAREDLRKLQDESTRLQEACDRAALQLS---RAKECEDNARSELEHSRDRFDKLQTDIRRAQGEKEHFQ 1042
Cdd:pfam02463 307 RRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKeleIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERL 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1043 SELERvtyELERAHAAQTKASASVEAAKEEAAHYAVELEKMRDRYEKSQVELRKLQDTdtfgretrrlKEENERLREKLD 1122
Cdd:pfam02463 387 SSAAK---LKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIEL----------KQGKLTEEKEEL 453
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1123 KTLMELETIRGKSQYESESFEKYKDKYEKIEMEVQNMESKLHETSLQLELSKGEVAKMLANQEKQRSELERAHIEREKAR 1202
Cdd:pfam02463 454 EKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGD 533
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1203 DKHEKLLKEVDRLRLQQSSVSPGDPVRASTSSSSALSAGERQEIDRLRDRLEKA-LQSRDATELEAGRLAKELEKAQMHL 1281
Cdd:pfam02463 534 LGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLkLPLKSIAVLEIDPILNLAQLDKATL 613
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1282 AKQQENTESTRIEFERMGAELGRLHDRLEKAEAEREALRQANRSGGAGAAPHPQLEKHVQKLesDVKQLAMEREQLVLQL 1361
Cdd:pfam02463 614 EADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKEL--LEIQELQEKAESELAK 691
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1362 EKSQEILMNFQKELQNAEAELQKTREENRKLRNGhqvppVAAPPAGPSPAEFQAMQKEIQTLQQKLQESERALQAAGPQQ 1441
Cdd:pfam02463 692 EEILRRQLEIKKKEQREKEELKKLKLEAEELLAD-----RVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEK 766
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1442 AQAAAAAGASREEIEQWRKVIEQEKSRADMADKAAQEMHKRIQLMDQHIKDQHAQMQKMQQQMQQQQQAAQQAVQQAAQQ 1521
Cdd:pfam02463 767 SELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQ 846
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1522 QQSaagaggadpKELEKVRGELQAACTERDRFQQQLELLVTELEKSKMSNQEQAKQLQTAQQQVQQLQQQVQQLQQQMQQ 1601
Cdd:pfam02463 847 KLE---------KLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKEN 917
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1602 LQQAASAGAGATDVQRQQLEQQQKQLEEVRKQIDNQAKATEGERKIIDEQRKQIDAKRKDIEEKEKKMAEFDVQLRKRKE 1681
Cdd:pfam02463 918 EIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEK 997
|
890 900
....*....|....*....|....
gi 2329048320 1682 QMDQLEKSLQTQGGGAAAAGELNK 1705
Cdd:pfam02463 998 ERLEEEKKKLIRAIIEETCQRLKE 1021
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
802-1397 |
1.64e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.38 E-value: 1.64e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 802 KALGQAARMQKERETLsldtDRIREKLEKTQVQLGRIQKERDQFsDELETLKERSESAQTLlmKAARDREAMQTDLEVLK 881
Cdd:COG4913 222 DTFEAADALVEHFDDL----ERAHEALEDAREQIELLEPIRELA-ERYAAARERLAELEYL--RAALRLWFAQRRLELLE 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 882 ERYEKSHAIQQKLQMERDDAVTEVEILKEKLDKAlyasQKLIDEKDTSNKEfekmlekydRAQNEIYRLQSRCDTAEADR 961
Cdd:COG4913 295 AELEELRAELARLEAELERLEARLDALREELDEL----EAQIRGNGGDRLE---------QLEREIERLERELEERERRR 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 962 ARLEVEAERSGLAASKAREDLRKLQDESTRLQEACDRaalQLSRAKECEDNARSELEHSRDRFDKLQTDIRRAQGEKEHF 1041
Cdd:COG4913 362 ARLEALLAALGLPLPASAEEFAALRAEAAALLEALEE---ELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNI 438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1042 QSELERVTYELERAhaaqtkasasvEAAKEEAAHYAVELEKMRDRYEKSQ--VE-------LRKLQDTDTFGRETRRLKE 1112
Cdd:COG4913 439 PARLLALRDALAEA-----------LGLDEAELPFVGELIEVRPEEERWRgaIErvlggfaLTLLVPPEHYAAALRWVNR 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1113 ENERLR---EKLDKTLMELETIR-------GKSQYESESFEKYkdkyekIEMEVQNM----------ESKLHETSLQLE- 1171
Cdd:COG4913 508 LHLRGRlvyERVRTGLPDPERPRldpdslaGKLDFKPHPFRAW------LEAELGRRfdyvcvdspeELRRHPRAITRAg 581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1172 LSKG---------------------EVAKMLANQEKQRSELERAHIEREKARDKHEKLLKEVDRLRLQQSSVSpgdpvra 1230
Cdd:COG4913 582 QVKGngtrhekddrrrirsryvlgfDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLA------- 654
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1231 STSSSSALSAGERQEIDRLRDRLEKALQSRDateleagrlakELEKAQMHLAKQQENTESTRIEFERMGAELGRLHDRLE 1310
Cdd:COG4913 655 EYSWDEIDVASAEREIAELEAELERLDASSD-----------DLAALEEQLEELEAELEELEEELDELKGEIGRLEKELE 723
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1311 KAEAEREALRQANRSGGAGAAPHPQLEkhvqkLESDVKQLAMEreqlvlqlEKSQEILMNFQKELQNAEAELQKTREENR 1390
Cdd:COG4913 724 QAEEELDELQDRLEAAEDLARLELRAL-----LEERFAAALGD--------AVERELRENLEERIDALRARLNRAEEELE 790
|
....*..
gi 2329048320 1391 KLRNGHQ 1397
Cdd:COG4913 791 RAMRAFN 797
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
297-942 |
1.91e-06 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 52.80 E-value: 1.91e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 297 ESIKKLLEMLQAKGMGKEEERQMFQQMQAMAQKQLDEFRLEIQRRDQEILAMAAKMKTLEEQHQDYQRHIAVLKESLCAK 376
Cdd:pfam05483 88 EKIKKWKVSIEAELKQKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNATRHLCNLLKETCARS 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 377 EEHYNMLQTDVEEMRARLEEKNRLIEKktqgtLQTVQERNRLTSELTELKDHMDIKDRkisvlQRKIENLEDLLKEKDNQ 456
Cdd:pfam05483 168 AEKTKKYEYEREETRQVYMDLNNNIEK-----MILAFEELRVQAENARLEMHFKLKED-----HEKIQHLEEEYKKEIND 237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 457 VDMARARLSAMQAHHSSSEGALTSLEEAIGDKEKQMAQLRDQRDRAEHEKQEERDLHEREVADYKIKLRAAESEVEKLQT 536
Cdd:pfam05483 238 KEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEE 317
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 537 RLERAVTERERLEIKLEASQSELGKSKAELEKATCEMGRSSADWESTkqriarLELENERLKHDLERSQVL-MQLEEQtt 615
Cdd:pfam05483 318 DLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEEL------LRTEQQRLEKNEDQLKIItMELQKK-- 389
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 616 lhkttfgrttmttSQELDRAQERADKASAELRrtqaELRVTQGETEKRFSDaerareeaaalQEKLEKSQGEvyrLKAKL 695
Cdd:pfam05483 390 -------------SSELEEMTKFKNNKEVELE----ELKKILAEDEKLLDE-----------KKQFEKIAEE---LKGKE 438
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 696 ENAQGEQESLRQELEKAQSGVSRIHADRDRAFSEVEKIKEEMERtqatlgksqlqhEKLQNSldkaqnevdHLQDKLDKA 775
Cdd:pfam05483 439 QELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEK------------EKLKNI---------ELTAHCDKL 497
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 776 CTENRRLVLEKEKLTYDYDNLQSQLDKALGQAARMQKERETLSLDTDRIREKLEKTQVQLgriQKERDQFSDELETLKER 855
Cdd:pfam05483 498 LLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEF---IQKGDEVKCKLDKSEEN 574
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 856 SESAQTLLMKAARDREAMQTDLEVLKERYEKSHAIQQKLQMERDDAVTEVEILKEKLDKALYASQKLIDEKDTSNKEFEK 935
Cdd:pfam05483 575 ARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEE 654
|
....*..
gi 2329048320 936 MLEKYDR 942
Cdd:pfam05483 655 IIDNYQK 661
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
637-1216 |
2.09e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 52.76 E-value: 2.09e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 637 ERADKASAELRRtqaELRVTQGETEKRFSDAERAREEAAALQEKLEKSQGEVYRLKAKLENAQGEQESLRQELEkaqsgv 716
Cdd:PRK03918 161 ENAYKNLGEVIK---EIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVK------ 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 717 srihadrdrafsEVEKIKEEMERTQATLGKSQLQHEKLQNSLDKAQNEVDHLQDKLdKACTENRRLVLEKEKLTYDYDNL 796
Cdd:PRK03918 232 ------------ELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEI-EELEEKVKELKELKEKAEEYIKL 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 797 QSQLDKALGQAARMQKERETLSLDTDRIRE---KLEKTQVQLGRIQKERDQFSDELETLKERSESAQTLLMKAARDREAM 873
Cdd:PRK03918 299 SEFYEEYLDELREIEKRLSRLEEEINGIEErikELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLK 378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 874 QT----DLEVLKERYEKSHAIQQKLQMERDDAVTEVEILKEKLDKALYASQKLIDEKDT--------SNKEFEKMLEKYD 941
Cdd:PRK03918 379 KRltglTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKcpvcgrelTEEHRKELLEEYT 458
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 942 RaqnEIYRLQSRCDTAEADRARLEVEAERSGLAASKAREdLRKLQDESTRLQEAcdRAALQLSRAKECEDNARsELEHSR 1021
Cdd:PRK03918 459 A---ELKRIEKELKEIEEKERKLRKELRELEKVLKKESE-LIKLKELAEQLKEL--EEKLKKYNLEELEKKAE-EYEKLK 531
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1022 DRFDKLQTDIRRAQGEKEHFQsELERVTYELERAHAAQTKASASVEAAKEEAAHYAV--------ELEKMRDRYEKSQVE 1093
Cdd:PRK03918 532 EKLIKLKGEIKSLKKELEKLE-ELKKKLAELEKKLDELEEELAELLKELEELGFESVeeleerlkELEPFYNEYLELKDA 610
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1094 LRKLQDTDtfgRETRRLKEENERLREKLDKTLMELETIRGK-----SQYESESFEKYKDKYEKIEMEVQNMESKLHEtsl 1168
Cdd:PRK03918 611 EKELEREE---KELKKLEEELDKAFEELAETEKRLEELRKEleeleKKYSEEEYEELREEYLELSRELAGLRAELEE--- 684
|
570 580 590 600
....*....|....*....|....*....|....*....|....*...
gi 2329048320 1169 qLELSKGEVAKMLANQEKQRSELERAHIEREKArdkhEKLLKEVDRLR 1216
Cdd:PRK03918 685 -LEKRREEIKKTLEKLKEELEEREKAKKELEKL----EKALERVEELR 727
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
578-1221 |
2.48e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 52.53 E-value: 2.48e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 578 ADWESTKQRIARLELENERLKHDLERSQVLMQLEEQTTLHKTTFGRTTMTTSQEL-DRAQERADKASAELRRTQAELRVT 656
Cdd:pfam12128 248 QEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKrDELNGELSAADAAVAKDRSELEAL 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 657 QgETEKRFSDAERAREEAAalQEKLEKSQGEVYRLKAKLENAQGEQESLRQELEKAQSGVS-RIHADRDRAFSEVEKIKE 735
Cdd:pfam12128 328 E-DQHGAFLDADIETAAAD--QEQLPSWQSELENLEERLKALTGKHQDVTAKYNRRRSKIKeQNNRDIAGIKDKLAKIRE 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 736 EMERTQATL-GKSQLQHEKLQNSLDKAQNEVDHLQDKLDKACTENRRL---VLEKEKLTYDYDNLQSQLDKALGQAARMQ 811
Cdd:pfam12128 405 ARDRQLAVAeDDLQALESELREQLEAGKLEFNEEEYRLKSRLGELKLRlnqATATPELLLQLENFDERIERAREEQEAAN 484
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 812 KERETLSLDTDRIREKLEKTQVQLGRIQKERDQFSDELETLKER-SESAQTLLmkaardrEAMQTDLEVLKERYEKSHAI 890
Cdd:pfam12128 485 AEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQlFPQAGTLL-------HFLRKEAPDWEQSIGKVISP 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 891 QQKLQMERDDAVTEVEILKE------KLDKALYASQKLIDEKDTSNKEFEKMLEKYDRAQNEIYRLQSRCDTAEADRARL 964
Cdd:pfam12128 558 ELLHRTDLDPEVWDGSVGGElnlygvKLDLKRIDVPEWAASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKA 637
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 965 EVEAERSGLAASKAREDLRKLQDESTRLQEACDRAalqLSRAKECEDNARSELEHSRDRFDKLQtdirraQGEKEHFQSE 1044
Cdd:pfam12128 638 SREETFARTALKNARLDLRRLFDEKQSEKDKKNKA---LAERKDSANERLNSLEAQLKQLDKKH------QAWLEEQKEQ 708
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1045 LervtyeLERAHAAQTKASASVEAAKEEAAHYAVELEKMRDRYEKSQVELRKLQDTDTFGRET-----RRLKEENERLRE 1119
Cdd:pfam12128 709 K------REARTEKQAYWQVVEGALDAQLALLKAAIAARRSGAKAELKALETWYKRDLASLGVdpdviAKLKREIRTLER 782
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1120 KLDKTLMELETIRGKSQYESESFEKYKDKYekiEMEVQNMESKLHETSLQLELSKGEVAKMLANQEKQRSELERAHIERE 1199
Cdd:pfam12128 783 KIERIAVRRQEVLRYFDWYQETWLQRRPRL---ATQLSNIERAISELQQQLARLIADTKLRRAKLEMERKASEKQQVRLS 859
|
650 660
....*....|....*....|..
gi 2329048320 1200 KARDKHEKLLKEVDRLRLQQSS 1221
Cdd:pfam12128 860 ENLRGLRCEMSKLATLKEDANS 881
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
163-850 |
8.15e-06 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 50.88 E-value: 8.15e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 163 QNTDLQRELGNLKRELELTNQKLGSSMHSIKTFWSPELKKERALRKEESAKYSLINDQLKLLSTENQKQAMLVRQLEEEL 242
Cdd:pfam05483 123 QELQFENEKVSLKLEEEIQENKDLIKENNATRHLCNLLKETCARSAEKTKKYEYEREETRQVYMDLNNNIEKMILAFEEL 202
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 243 RLRMRQPNLEMQQQMEAIYAENDHLQREisiLRETIKDLECRVETQKQTLIARDESIKK---LLEMLQAKGMGKEEERQM 319
Cdd:pfam05483 203 RVQAENARLEMHFKLKEDHEKIQHLEEE---YKKEINDKEKQVSLLLIQITEKENKMKDltfLLEESRDKANQLEEKTKL 279
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 320 FQQMQAMAQKQLDEFRLEIQRRDQEILAMAAKMKTLEEQHQDYQRHIAVLkeslcakeehynmlqtdVEEMRARLEEKNR 399
Cdd:pfam05483 280 QDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTICQL-----------------TEEKEAQMEELNK 342
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 400 liekktqgtlqtvqERNRLTSELTELKDHMDIKDRKISVLQRKIENLEDLLKEKDNQVDMARARLSAMQAHHSSSEGALT 479
Cdd:pfam05483 343 --------------AKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVELE 408
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 480 SLEEAIGDKEKQMAQLRDQRDRAEHEKQEERDLherevadyKIKLRAAESEVEKLQTRLERAVTERERLEIKLEASQSEL 559
Cdd:pfam05483 409 ELKKILAEDEKLLDEKKQFEKIAEELKGKEQEL--------IFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTEL 480
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 560 GKSKAELEKATCEMGRSSADWESTKQRIARLELENERLKHDLE--RSQVLMQLEEQTTLHKTTFGRTTMTTSQELDRAQE 637
Cdd:pfam05483 481 EKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIIncKKQEERMLKQIENLEEKEMNLRDELESVREEFIQK 560
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 638 RaDKASAELRRTQAELRVTQGETEKRFSDAERAREEAAALQEKLEKSQGEVYRLKAKLENAQGEQESLRQELEKAQSGVS 717
Cdd:pfam05483 561 G-DEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVN 639
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 718 RIHADRDrafSEVEKIKEEMERTQATLGKSQLQHEKLQNSLDKAQNEVDH---LQDKLDKACTEN-RRLVLEKEKLTYDY 793
Cdd:pfam05483 640 KLELELA---SAKQKFEEIIDNYQKEIEDKKISEEKLLEEVEKAKAIADEavkLQKEIDKRCQHKiAEMVALMEKHKHQY 716
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2329048320 794 DNLQSQLDKALGQAARMQKE----RETLSLDTDRIREKLEKTQVQLGRIQKERDQFSDELE 850
Cdd:pfam05483 717 DKIIEERDSELGLYKNKEQEqssaKAALEIELSNIKAELLSLKKQLEIEKEEKEKLKMEAK 777
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
125-549 |
8.82e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.84 E-value: 8.82e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 125 LEDELYGRSArqspSAMGGYNTGMGPTSDRAYLGDlqhQNTDLQRELGNLKRELELTNQKLgssmHSIKTfwspELKKER 204
Cdd:TIGR02169 644 LEGELFEKSG----AMTGGSRAPRGGILFSRSEPA---ELQRLRERLEGLKRELSSLQSEL----RRIEN----RLDELS 708
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 205 ALRKEESAKYSLINDQLKLLSTENQKQAMLVRQLEEELRlrmrqpnlEMQQQMEAIYAENDHLQREISILRETIKDLECR 284
Cdd:TIGR02169 709 QELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLS--------SLEQEIENVKSELKELEARIEELEEDLHKLEEA 780
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 285 VETQKQTLiaRDESIKKLLEMLQAkgmgKEEERQmfqqmqaMAQKQLDEFRLEIQRRDQEILAMAAKMKTLEEQHQDYQR 364
Cdd:TIGR02169 781 LNDLEARL--SHSRIPEIQAELSK----LEEEVS-------RIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKE 847
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 365 HIavlkeslcakeehyNMLQTDVEEMRARLEEKNRLIEKKTqgtlqtvQERNRLTSELTELKDHMDIKDRKISVLQRKIE 444
Cdd:TIGR02169 848 QI--------------KSIEKEIENLNGKKEELEEELEELE-------AALRDLESRLGDLKKERDELEAQLRELERKIE 906
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 445 NLEDLLKEKDNQVDMARARLSAMQAHHSSSEGALTSLEEaIGDKEKQMAQLRDQRDRAEHEKQEERDLHEREVADYKIKL 524
Cdd:TIGR02169 907 ELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEE-IPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVL 985
|
410 420
....*....|....*....|....*
gi 2329048320 525 RAAESEVEKLQTRLERAVTERERLE 549
Cdd:TIGR02169 986 KRLDELKEKRAKLEEERKAILERIE 1010
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
338-992 |
9.85e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 50.40 E-value: 9.85e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 338 IQRRDQEILAMAAKMKTLEEQHQDYQRHIAVLKESLCAKEEHYNMLQTDVEEMRARLEE-KNRLIEKKTQgtlqtvqeRN 416
Cdd:TIGR04523 28 ANKQDTEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDlNDKLKKNKDK--------IN 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 417 RLTSELTELKDHMDIKDRKISVLQRKIENLEDLLKEKDNQVDMARARLsamqahhSSSEGALTSLEEAIGDKEKQMAQLR 496
Cdd:TIGR04523 100 KLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEI-------KKKEKELEKLNNKYNDLKKQKEELE 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 497 DQRDRAEHEKQEErdlhEREVADYKIKLRAAESEVEKLQTRLERavteRERLEIKLEASQSELGKSKAELEKATCEMGRS 576
Cdd:TIGR04523 173 NELNLLEKEKLNI----QKNIDKIKNKLLKLELLLSNLKKKIQK----NKSLESQISELKKQNNQLKDNIEKKQQEINEK 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 577 SADWESTKQRIARLELENERLKHDLERSQvlMQLEEQTTLHKTTFGRTTMTTSQELDRAQERADKASAELRrtqAELRVT 656
Cdd:TIGR04523 245 TTEISNTQTQLNQLKDEQNKIKKQLSEKQ--KELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKELK---SELKNQ 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 657 QGETEKRFSDAERAREEAAALQEKLEKsqgevyrLKAKLENAQGEQESLRQELEKAQsgvsrihadrdrafSEVEKIKEE 736
Cdd:TIGR04523 320 EKKLEEIQNQISQNNKIISQLNEQISQ-------LKKELTNSESENSEKQRELEEKQ--------------NEIEKLKKE 378
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 737 MERTQATLGKSQLQHEKLQNSLDKAQNEVDHLQDKLDKACTENRRLVLEKEKLTYDYDNLQSQLDKALGQAARMQKERET 816
Cdd:TIGR04523 379 NQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKN 458
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 817 LSLDTDRIREKLEKTQVQLGRIQKERDQFSDELEtlkersESAQTLLMKAARDREAMQTdLEVLKERYEKSHAIQQKLQM 896
Cdd:TIGR04523 459 LDNTRESLETQLKVLSRSINKIKQNLEQKQKELK------SKEKELKKLNEEKKELEEK-VKDLTKKISSLKEKIEKLES 531
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 897 ERDDAVTEVEILKEKLDKALY--ASQKLIDEKDTSNKEFEKMLEKYDRAQNEIYRLQSRCDTAEADRARLEVEAERSGLA 974
Cdd:TIGR04523 532 EKKEKESKISDLEDELNKDDFelKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKK 611
|
650
....*....|....*...
gi 2329048320 975 ASKAREDLRKLQDESTRL 992
Cdd:TIGR04523 612 ISSLEKELEKAKKENEKL 629
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
252-726 |
1.12e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.42 E-value: 1.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 252 EMQQQMEAIYAENDHLQREISILRETIKDLECRVETQKQTLIARDESIKKLL---EMLQAKGMGKEEERQMFQQMQAMAQ 328
Cdd:PRK02224 248 ERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLaeaGLDDADAEAVEARREELEDRDEELR 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 329 KQLDEFRLEIQRRDQEILAMAAKMKTLEEQHQDYQRHIAVLKESLCAKEEHYNMLQTDVEEMRARLEEknrlIEKKTQGT 408
Cdd:PRK02224 328 DRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEE----LRERFGDA 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 409 lqtvqernrlTSELTELKDHMDIKDRKISVLQRKIENLEDLLKEKDNQVDMARARLSAMQAHHSSSEGALTSLEEAIGDK 488
Cdd:PRK02224 404 ----------PVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEED 473
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 489 EKQMAQLRDQRDRAEHEKQEERDLHEREVAdykikLRAAESEVEKLQTRLERAV----TERERLEIKLEASQsELGKSKA 564
Cdd:PRK02224 474 RERVEELEAELEDLEEEVEEVEERLERAED-----LVEAEDRIERLEERREDLEeliaERRETIEEKRERAE-ELRERAA 547
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 565 ELEkATCEMGRSSAD-----WESTKQRIARLELENERLKHDLERSQVLMQLEEQTTLHKTTFGRTTMTTSQELDRAQERA 639
Cdd:PRK02224 548 ELE-AEAEEKREAAAeaeeeAEEAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDEIERLREKREALAELNDERR 626
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 640 DKASAEL-RRTQAELRVTQGETEKRFSDAERAREEAAALQEKLEKSQGEVYRLKAK---LENAQGEQESLRQELEKAQSG 715
Cdd:PRK02224 627 ERLAEKReRKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEigaVENELEELEELRERREALENR 706
|
490
....*....|.
gi 2329048320 716 VSRIHADRDRA 726
Cdd:PRK02224 707 VEALEALYDEA 717
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
202-573 |
1.47e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.06 E-value: 1.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 202 KERALRKEESAKYSLINDQLKLLSTENQKQAMLVRQLEEELRLRMRQPNLEmqqqmeaiyAENDHLQREISILRETIKDL 281
Cdd:TIGR02168 696 LEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLE---------ERIAQLSKELTELEAEIEEL 766
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 282 ECRVETQKQTLIARDESIKKLlemlqakgmgkEEERQMFQQMQAMAQKQLDEFRLEIQRRDQEILAMAAKMKTLEEQHQD 361
Cdd:TIGR02168 767 EERLEEAEEELAEAEAEIEEL-----------EAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAA 835
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 362 YQRHIAVLKESLCAKEEhynmlqtDVEEMRARLEEKNRLIEKktqgtlqtvqernrLTSELTELKDHMDIKDRKISVLQR 441
Cdd:TIGR02168 836 TERRLEDLEEQIEELSE-------DIESLAAEIEELEELIEE--------------LESELEALLNERASLEEALALLRS 894
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 442 KIENLEDLLKEKDNQVDMARARLSAMQAHHSSSEGALTSLEeaigdkekqmAQLRDQRDRAEHEKQEERDLHEREVADYK 521
Cdd:TIGR02168 895 ELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLE----------VRIDNLQERLSEEYSLTLEEAEALENKIE 964
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2329048320 522 IKLRAAESEVEKLQTRLER-------AVTERERLE---IKLEASQSELGKSKAELEKATCEM 573
Cdd:TIGR02168 965 DDEEEARRRLKRLENKIKElgpvnlaAIEEYEELKeryDFLTAQKEDLTEAKETLEEAIEEI 1026
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
383-589 |
1.85e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.99 E-value: 1.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 383 LQTDVEEMRARLEEKNRLIEKKTQGTLQTVQERNRLTSELTELKDHMDIKDRKISVLQRKIENLE----DLLKEKDNQVD 458
Cdd:COG4942 25 AEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEkeiaELRAELEAQKE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 459 MARARLSAMQAHHSSSEGALTSLEEAIGDKE------KQMAQLRDQRDRAEHEKQEERDLHEREVADYKIKLRAAESEVE 532
Cdd:COG4942 105 ELAELLRALYRLGRQPPLALLLSPEDFLDAVrrlqylKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELE 184
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 2329048320 533 KLQTRLERAVTERERLEIKLEASQSELGKSKAELEKATCEMGRSSADWESTKQRIAR 589
Cdd:COG4942 185 EERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
224-897 |
1.91e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 49.66 E-value: 1.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 224 LSTENQKQAMLVRQLEEELRLRMRQPN---LEMQQQMEAIYAENDHLQREISILRETIKDLEcRVETQKQTLIARDESIK 300
Cdd:TIGR00606 403 QEDEAKTAAQLCADLQSKERLKQEQADeirDEKKGLGRTIELKKEILEKKQEELKFVIKELQ-QLEGSSDRILELDQELR 481
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 301 K------------LLEMLQAKGMGKEEERQMFQQMQAMAQKQLDEFRLEIQRRDQEILAMAAKMKTLEEQHQDYQRHIAV 368
Cdd:TIGR00606 482 KaerelskaeknsLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDE 561
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 369 LKESLC------AKEEHYNMLQTDVEEMRARLEEKNRLIEKKTQGTLQTVQERNRLTSELTELKDHMdIKDRKISVLQRK 442
Cdd:TIGR00606 562 LTSLLGyfpnkkQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKL-FDVCGSQDEESD 640
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 443 IENLEDLLKEKDNQvdmaRARLSAMQAHHSSSEGALTsleeaigDKEKQMAQLRDQRDRAEHEKQEErdlhereVADYKI 522
Cdd:TIGR00606 641 LERLKEEIEKSSKQ----RAMLAGATAVYSQFITQLT-------DENQSCCPVCQRVFQTEAELQEF-------ISDLQS 702
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 523 KLRAAESEVEKLQTRLERAVTERERLEIKLEASQSELGKSKAEL-------EKATCEMGRSSADWESTKQRIARLELENE 595
Cdd:TIGR00606 703 KLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIpelrnklQKVNRDIQRLKNDIEEQETLLGTIMPEEE 782
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 596 RLKHDLERSQVLMQLEEQTT-LHKTTFGRTTMTTSQELDRAQERADKasaELRRTQAELRVTQGETEKRFSDAERAREEA 674
Cdd:TIGR00606 783 SAKVCLTDVTIMERFQMELKdVERKIAQQAAKLQGSDLDRTVQQVNQ---EKQEKQHELDTVVSKIELNRKLIQDQQEQI 859
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 675 AALQEKLEKSQGEVYRLKAKLENAQGEQESLRQELEKAQSGVSRIHADRDRAFSEVEKIKEEMERTQATLGKSQLQHEKL 754
Cdd:TIGR00606 860 QHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKA 939
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 755 QNSLDKAQNEVD----HLQDKLDKACTENRRLVLEKEKltyDYDNLQSQLDKALGQAARMQKERETL--SLDTDRIREKL 828
Cdd:TIGR00606 940 QDKVNDIKEKVKnihgYMKDIENKIQDGKDDYLKQKET---ELNTVNAQLEECEKHQEKINEDMRLMrqDIDTQKIQERW 1016
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2329048320 829 EKTQVQLGRIQKERDQFSDELETLKERSESAQTLLMKAARDReaMQTDLEVLKERYEKSHAIQQKLQME 897
Cdd:TIGR00606 1017 LQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQK--LEENIDLIKRNHVLALGRQKGYEKE 1083
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
336-503 |
3.07e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 47.23 E-value: 3.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 336 LEIQRRDQEILAMAAKMKTLEEQHQDYQRHIAVLKESLCAKEEHYNMLQTDVEEMRARLEEKNRLIEKKT--QGTLQTVQ 413
Cdd:COG1579 10 LDLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEeqLGNVRNNK 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 414 ERNRLTSELTELKdhmdikdRKISVLQRKIENLEDLLKEKDNQVDMARARLSAMQAHHsssEGALTSLEEAIGDKEKQMA 493
Cdd:COG1579 90 EYEALQKEIESLK-------RRISDLEDEILELMERIEELEEELAELEAELAELEAEL---EEKKAELDEELAELEAELE 159
|
170
....*....|
gi 2329048320 494 QLRDQRDRAE 503
Cdd:COG1579 160 ELEAEREELA 169
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
679-1165 |
4.03e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 48.48 E-value: 4.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 679 EKLEKSQGEVYRLKAKLENAQGEQESLRQELEKAQSGVSRIHADRDRAFSEVEKIKEEMERTQATLGKSQLQHEKLQNSL 758
Cdd:TIGR04523 211 QKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQL 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 759 DKAQNEVDHL-----QDKLDKACTENRRLVLEKEKLTYDYDNLQSQLDKALGQAARMQKERETLSLDTDRIREKLEKTQV 833
Cdd:TIGR04523 291 NQLKSEISDLnnqkeQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQN 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 834 QLGRIQKERDQFSDELETLKERSESAQTLLMKAARDREAMQTDLEVLKERYEKSHAIQQKLQMERDDAVTEVEILKEKld 913
Cdd:TIGR04523 371 EIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQ-- 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 914 kaLYASQKLIDEKDTSNKEFEKMLEKYDRAQNEIyrlqsrcdtaeadraRLEVEAERSGLAASKarEDLRKLQDESTRLQ 993
Cdd:TIGR04523 449 --DSVKELIIKNLDNTRESLETQLKVLSRSINKI---------------KQNLEQKQKELKSKE--KELKKLNEEKKELE 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 994 EACDRAALQLSRAKECEDNARSELEHSRDRFDKLQTDIRRAQGE--KEHFQSELERVTYELERAHAAQTKASASVEAAKE 1071
Cdd:TIGR04523 510 EKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFElkKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQE 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1072 EAAHYAVELEKMRDRYEKSQVELRKLQdtdtfgRETRRLKEENERLREKLDKTLMELETIRGKSQYESESFEKYKDKYEK 1151
Cdd:TIGR04523 590 LIDQKEKEKKDLIKEIEEKEKKISSLE------KELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPE 663
|
490
....*....|....
gi 2329048320 1152 IEMEVQNMESKLHE 1165
Cdd:TIGR04523 664 IIKKIKESKTKIDD 677
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
959-1360 |
4.28e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 48.80 E-value: 4.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 959 ADRARLEVEAERSGLAASKAREDLRKLQDESTRLQEACDRAALQLSRAKECEDNARSELEHSRDRFDKLQTDIRrAQGEK 1038
Cdd:COG3096 271 ADYMRHANERRELSERALELRRELFGARRQLAEEQYRLVEMARELEELSARESDLEQDYQAASDHLNLVQTALR-QQEKI 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1039 EHFQSELERVTYELERAHAAqtkasasVEAAKEEAAHYAVELEKMRDRYEKSQVELRKLQDT-DTfgRETRRLKEENERl 1117
Cdd:COG3096 350 ERYQEDLEELTERLEEQEEV-------VEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQAlDV--QQTRAIQYQQAV- 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1118 rekldKTLMELETIRGKSQYESESFEKYkdkyekiEMEVQNMESKLHETSLQLElSKGEVAKMLANQEKQRSELERA--- 1194
Cdd:COG3096 420 -----QALEKARALCGLPDLTPENAEDY-------LAAFRAKEQQATEEVLELE-QKLSVADAARRQFEKAYELVCKiag 486
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1195 HIEREKARDKHEKLLKEVDRLRLQQSSVSPGDPVRASTSSSSALSAGERQEIDRLRDRLEKALQSRDATELEAGRLAKEL 1274
Cdd:COG3096 487 EVERSQAWQTARELLRRYRSQQALAQRLQQLRAQLAELEQRLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQL 566
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1275 EKAQMHLAKQQENTESTRIEFERMGAELGRLHDRLEKAEAEREALRQANRSGGAGAAPHPQLEKHVQKLESDVKQLAMER 1354
Cdd:COG3096 567 EELEEQAAEAVEQRSELRQQLEQLRARIKELAARAPAWLAAQDALERLREQSGEALADSQEVTAAMQQLLEREREATVER 646
|
....*.
gi 2329048320 1355 EQLVLQ 1360
Cdd:COG3096 647 DELAAR 652
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
526-762 |
1.02e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 1.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 526 AAESEVEKLQTRLERAVTERERLEIKLEASQSELGKSKAELEKATCEMGRSSADWESTKQRIARLELENERLKHDLERSQ 605
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 606 VlmQLEEQTTLHKTTFGRTTMTTSQELDRAQERADKASAELRRTQAELRVTQgetekrfsdaerareEAAALQEKLEKSQ 685
Cdd:COG4942 97 A--ELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAP---------------ARREQAEELRADL 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2329048320 686 GEVYRLKAKLENAQGEQESLRQELEKAQSGVSRIHADRDRAFSEVEKIKEEMERTQATLGKSQLQHEKLQNSLDKAQ 762
Cdd:COG4942 160 AELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEA 236
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
751-928 |
1.37e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 46.55 E-value: 1.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 751 HEKLQNSLDKAQNE-VDHLQDKLDKACTENRRLVLEKEKLTYDYDNLQSQLD------KALGQA-ARMQKERETLS---- 818
Cdd:PHA02562 200 YNKNIEEQRKKNGEnIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEdpsaalNKLNTAaAKIKSKIEQFQkvik 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 819 ------------LDTDRIREKLEKTQVQLGRIQKERDQFSDELETLKERSESAQTLLMKA---ARDREAMQTDLEVLKER 883
Cdd:PHA02562 280 myekggvcptctQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLlelKNKISTNKQSLITLVDK 359
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 2329048320 884 YEKSHAIQQKLQMERDDAVTEVEILKEKLDKALYASQKLIDEKDT 928
Cdd:PHA02562 360 AKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYH 404
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
698-976 |
1.53e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 46.36 E-value: 1.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 698 AQGEQESLRQELEKAQSGVSRIHADRDRAFSEVEKIKEEMERTQATLGKSQLQHEKLQNSLDKAQNEVDHLQDKLDKact 777
Cdd:COG3883 14 ADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGE--- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 778 enrrlvlekekltydydnlqsqldkalgQAARMQKERETLS-----LDTDRIREKLEKTQVqLGRIQKERDQFSDELETL 852
Cdd:COG3883 91 ----------------------------RARALYRSGGSVSyldvlLGSESFSDFLDRLSA-LSKIADADADLLEELKAD 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 853 KERSESAQTLLMKAARDREAMQTDLEVLKERYEKSHAIQQKLQMERDDAVTEVEILKEKLDKALYASQKLIDEKDTSNKE 932
Cdd:COG3883 142 KAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAA 221
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 2329048320 933 FEKMLEKYDRAQNEIYRLQSRCDTAEADRARLEVEAERSGLAAS 976
Cdd:COG3883 222 AAAAAAAAAAAAAAAAAAAAAAASAAGAGAAGAAGAAAGSAGAA 265
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
959-1357 |
1.66e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 46.87 E-value: 1.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 959 ADRARLEVEAERSGLAASKAREDL----RKLQDESTRLQEACDRAALQLSRAKECEDnarsELEHSRDRFDKLQTDiRRA 1034
Cdd:PRK04863 272 ADYMRHANERRVHLEEALELRRELytsrRQLAAEQYRLVEMARELAELNEAESDLEQ----DYQAASDHLNLVQTA-LRQ 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1035 QGEKEHFQSELERVTYELERAHAAqtkasasVEAAKEEAAhyavELEKMRDRYEKSQVELRKlQDTDTFGR----ETRRL 1110
Cdd:PRK04863 347 QEKIERYQADLEELEERLEEQNEV-------VEEADEQQE----ENEARAEAAEEEVDELKS-QLADYQQAldvqQTRAI 414
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1111 KEENERlrekldKTLMELETIRGKSQYESESFEKYKDKYekiemevQNMESKLHETSLQLElSKGEVAKMLANQEKQRSE 1190
Cdd:PRK04863 415 QYQQAV------QALERAKQLCGLPDLTADNAEDWLEEF-------QAKEQEATEELLSLE-QKLSVAQAAHSQFEQAYQ 480
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1191 LERA---HIEREKARDKHEKLLKEVDRLRLQQSSVSPgdpvRASTSSSSALSAGERQEIDRLRDRLEKALQSRDATELEA 1267
Cdd:PRK04863 481 LVRKiagEVSRSEAWDVARELLRRLREQRHLAEQLQQ----LRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDEL 556
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1268 GRLAKELEKAQMHLAKQQENTESTRIEFERMGAELGRLHDRLEKAEAE----REALRQANRSGGAGAAPHPQLEKHVQKL 1343
Cdd:PRK04863 557 EQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARAPAwlaaQDALARLREQSGEEFEDSQDVTEYMQQL 636
|
410
....*....|....
gi 2329048320 1344 ESDVKQLAMEREQL 1357
Cdd:PRK04863 637 LERERELTVERDEL 650
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
413-554 |
1.78e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 44.92 E-value: 1.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 413 QERNRLTSELTELKDHMDIKDRKISVLQRKIENLEDLLKEKDNQVDMARARLSAMQAHHSSSEGA---------LTSLEE 483
Cdd:COG1579 24 HRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNkeyealqkeIESLKR 103
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2329048320 484 AIGDKEKQMAQLRDQRDRAEHEKQEERDLHEREVADYKIKLRAAESEVEKLQTRLERAVTERERLEIKLEA 554
Cdd:COG1579 104 RISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAKIPP 174
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
516-732 |
2.16e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.53 E-value: 2.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 516 EVADYKIKLRAAESEVEKLQTRLERAVTERERLEIKLEASQSELGKSKAELEKATCEMGRSSADWESTKQRIARLELENE 595
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 596 RLKHDLERSQVLMQLEEQTTLHK---TTFGRTTMTTSQELDRAQERADKASAE-LRRTQAELRVTQGETEKRFSDAERAR 671
Cdd:COG4942 101 AQKEELAELLRALYRLGRQPPLAlllSPEDFLDAVRRLQYLKYLAPARREQAEeLRADLAELAALRAELEAERAELEALL 180
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2329048320 672 EEAAALQEKLEKSQGEVYRLKAKLENAQGEQESLRQELEKAQSGVSRIHADRDRAFSEVEK 732
Cdd:COG4942 181 AELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1243-1432 |
2.44e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.53 E-value: 2.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1243 RQEIDRLRDRLEKALQSRDATELEAGRLAKELEKAQMHLAKQQENTESTRIEFERMGAELGRLHDRLEKAEAEREALRQA 1322
Cdd:COG4942 26 EAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEE 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1323 -----------NRSGGAGAAPHPQLEKHVQKLESDVKQLAMEREQLVLQLEKSQEILMNFQKELQNAEAELQKTREENRK 1391
Cdd:COG4942 106 laellralyrlGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEE 185
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 2329048320 1392 LRNGHQVPPVAAPPAGPS-PAEFQAMQKEIQTLQQKLQESER 1432
Cdd:COG4942 186 ERAALEALKAERQKLLARlEKELAELAAELAELQQEAEELEA 227
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
459-712 |
3.33e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.14 E-value: 3.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 459 MARARLSAMQAHHSSSEGALTSLEEAIGDKEKQMAQLRDQRDRAehekQEERDLHEREVADYKIKLRAAESEVEKLQTRL 538
Cdd:COG4942 10 LLALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKAL----LKQLAALERRIAALARRIRALEQELAALEAEL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 539 ERAVTERERLEIKLEASQSELgkskAELEKATCEMGRSSAdwestkqriARLELENErlkhDLERSQVLMQLEEQTTLHK 618
Cdd:COG4942 86 AELEKEIAELRAELEAQKEEL----AELLRALYRLGRQPP---------LALLLSPE----DFLDAVRRLQYLKYLAPAR 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 619 TTFGRTTMTTSQELDRAQERADKASAELRRTQAELRVTQGETEKrfsDAERAREEAAALQEKLEKSQGEVYRLKAKLENA 698
Cdd:COG4942 149 REQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEA---LKAERQKLLARLEKELAELAAELAELQQEAEEL 225
|
250
....*....|....
gi 2329048320 699 QGEQESLRQELEKA 712
Cdd:COG4942 226 EALIARLEAEAAAA 239
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
270-843 |
3.75e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.40 E-value: 3.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 270 EISILRETIKDLECRVETQKQTLIARDESIKKLLEMLQAKG---MGKEEERQMFQQMQAMAQKQLDEFRLEIQRRDQEIL 346
Cdd:TIGR04523 76 KIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKeqkNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELE 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 347 AMAAKMKTLEEQHQDYQRHIAVLKE------------------------SLCAKEEHYNMLQTDVEEMRARLEEKNRLIE 402
Cdd:TIGR04523 156 KLNNKYNDLKKQKEELENELNLLEKeklniqknidkiknkllklelllsNLKKKIQKNKSLESQISELKKQNNQLKDNIE 235
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 403 KKTQGTLQTVQERNRLTSELTELKDHMDIKDRKISVLQRKIENLEDLLKEKDNQVDMARARLSAMQahHSSSEGALTSLE 482
Cdd:TIGR04523 236 KKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLN--NQKEQDWNKELK 313
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 483 EAIGDKEKQMAQLRDQRDraehEKQEERDLHEREVADYKIKLRAAESEVEKLQTRLERAVTERERLEIKLEASQSELGKS 562
Cdd:TIGR04523 314 SELKNQEKKLEEIQNQIS----QNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNL 389
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 563 KAELEKATCEMGRSSADWESTKQRIARLELENERLKHDLERSQVLMQLEEQTTLHKTTFGRTTMTTSQELDRA----QER 638
Cdd:TIGR04523 390 ESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTreslETQ 469
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 639 ADKASAELRRTQAELRVTQGETEKRFSDAERAREEAAALQEKLEKSQGEVYRLKAKLENAQGEQESLRQELEKAQSGVSR 718
Cdd:TIGR04523 470 LKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNK 549
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 719 IHADRDRafsevEKIKEEMERTQATLgkSQLQHEklQNSLDKAQNEvdhLQDKLDKACTENRRLVLEKEKLTYDYDNLQS 798
Cdd:TIGR04523 550 DDFELKK-----ENLEKEIDEKNKEI--EELKQT--QKSLKKKQEE---KQELIDQKEKEKKDLIKEIEEKEKKISSLEK 617
|
570 580 590 600
....*....|....*....|....*....|....*....|....*
gi 2329048320 799 QLDKAlgqaarmQKERETLSLDTDRIREKLEKTQVQLGRIQKERD 843
Cdd:TIGR04523 618 ELEKA-------KKENEKLSSIIKNIKSKKNKLKQEVKQIKETIK 655
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
349-471 |
4.13e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 45.23 E-value: 4.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 349 AAKMKTLEEQHQDYQRHIAVLKESLCAKEEHYNMLQTDVEEMRARLEEKNRLIEkktqgtlqtvqernRLTSELTELKDH 428
Cdd:COG2433 391 PEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIE--------------RLERELSEARSE 456
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 2329048320 429 MDI---KDRKISVLQRKIENLEDLLKEKDNQVDMARARLSAMQAHH 471
Cdd:COG2433 457 ERReirKDREISRLDREIERLERELEEERERIEELKRKLERLKELW 502
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1534-1784 |
4.46e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 45.31 E-value: 4.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1534 KELEKVRGELQAACTERDRFQQQLELLVTELEKSKMSNQEQAKQLQTAQQQVQQLQQQVQQLQQQMQQLQQAASAgagat 1613
Cdd:COG1196 239 AELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRE----- 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1614 dvQRQQLEQQQKQLEEVRKQIDNQAKATEGERKIIDEQRKQIDAKRKDIEEKEKKMAEfdvQLRKRKEQMDQLEKSLQTQ 1693
Cdd:COG1196 314 --LEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLE---AEAELAEAEEELEELAEEL 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1694 GGGAAAAGELNKKLMDTQRQLEACVKELQNTKEEHKKAATETERLLQLVQMSQEEQNAKEKTIMDLQQALKIAQAKVKQA 1773
Cdd:COG1196 389 LEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAEL 468
|
250
....*....|.
gi 2329048320 1774 QTQQQQQQDAG 1784
Cdd:COG1196 469 LEEAALLEAAL 479
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
630-852 |
4.95e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.29 E-value: 4.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 630 QELDRAQERADKASAELRRTQAELRVTQGETEKRFS--DAERAREEAAALQ---EKLEKSQGEVYRLKAKLENAQGEQES 704
Cdd:COG4913 624 EELAEAEERLEALEAELDALQERREALQRLAEYSWDeiDVASAEREIAELEaelERLDASSDDLAALEEQLEELEAELEE 703
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 705 LRQELEKAQSGVSRIHADRDRAFSEVEKIK---EEMERTQATLGKSQLQHEKLQNSLDKAQNEV-DHLQDKLDKACTENR 780
Cdd:COG4913 704 LEEELDELKGEIGRLEKELEQAEEELDELQdrlEAAEDLARLELRALLEERFAAALGDAVERELrENLEERIDALRARLN 783
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 781 RLV--LEKEKLTY--DYDNLQSQLDKALGQAARMQKERETLSLD-----TDRIREKLEKTQVQ-----LGRIQKERDQFS 846
Cdd:COG4913 784 RAEeeLERAMRAFnrEWPAETADLDADLESLPEYLALLDRLEEDglpeyEERFKELLNENSIEfvadlLSKLRRAIREIK 863
|
....*.
gi 2329048320 847 DELETL 852
Cdd:COG4913 864 ERIDPL 869
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
244-533 |
6.70e-04 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 44.51 E-value: 6.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 244 LRMRQPNLEMQQQMEAIYAENDHLQREISILRETIKDLECRVETQKQTLIaRDESIKKLLEMLQakgmgkeeerqmfqqm 323
Cdd:PLN02939 145 LLLNQARLQALEDLEKILTEKEALQGKINILEMRLSETDARIKLAAQEKI-HVEILEEQLEKLR---------------- 207
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 324 qamaqkqlDEFRLEIQRRDQEILAMAAKMKTLEEQHQDYQRHIAVLKESLCAKEEHYNMLQTdVEEMRARLEEKNRLIEK 403
Cdd:PLN02939 208 --------NELLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFK-LEKERSLLDASLRELES 278
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 404 KtqgtLQTVQErnrltseltelkDHMDIKDRKISVLQRKIENLEDLLKEKDNQVDMARARLSAMQAHHSSSEGALTSLEE 483
Cdd:PLN02939 279 K----FIVAQE------------DVSKLSPLQYDCWWEKVENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKE 342
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 2329048320 484 AIGDK---------EKQMAQLRDQRDRAEHEKQEERDLHEREVADYKIKLRAAESEVEK 533
Cdd:PLN02939 343 ANVSKfssykvellQQKLKLLEERLQASDHEIHSYIQLYQESIKEFQDTLSKLKEESKK 401
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
767-925 |
6.76e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 43.37 E-value: 6.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 767 HLQDKLDKACTENRRLVLEKEKLTYDYDNLQSQLDKALGQAARMQKERETLSLDTDRIREKLEKTQVQLGRI--QKERDQ 844
Cdd:COG1579 14 ELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVrnNKEYEA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 845 FSDELETLKERSESAQTLLMKAARDREAMQTDLEVLKERYEKSHAIQQKLQMERDDAVTEVEILKEKLDKALYASQKLID 924
Cdd:COG1579 94 LQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAKIP 173
|
.
gi 2329048320 925 E 925
Cdd:COG1579 174 P 174
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
331-563 |
6.83e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 6.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 331 LDEFRLEIQRRDQEILAMAAKMKTLEEQHQDYQRHIAVLKESLCAKEEHYNMLQTDVEEMRARLEEKNRLIEKKTQ--GT 408
Cdd:COG4942 29 LEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEelAE 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 409 LQTVQERNRLTSELTELKDHMDIKDrkisvLQRKIENLEDLLKEKDNQVDMARARLSAMQAHHSSSEGALTSLEEAIGDK 488
Cdd:COG4942 109 LLRALYRLGRQPPLALLLSPEDFLD-----AVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAEL 183
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2329048320 489 EKQMAQLRDQRDraehEKQEERDLHEREVADYKIKLRAAESEVEKLQTRLERAVTERERLEIKLEASQSELGKSK 563
Cdd:COG4942 184 EEERAALEALKA----ERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAALKGK 254
|
|
| PHA00430 |
PHA00430 |
tail fiber protein |
974-1103 |
7.25e-04 |
|
tail fiber protein
Pssm-ID: 222790 [Multi-domain] Cd Length: 568 Bit Score: 44.50 E-value: 7.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 974 AASKAREDLRKLQDESTRLQEACDRAALQLSRAKECEDNARSELEHSRDRFDKLQTDIRRAQGEKEHFQSELERVTYELE 1053
Cdd:PHA00430 167 EANRSRNEADRARNQAERFNNESGASATNTKQWRSEADGSNSEANRFKGYADSMTSSVEAAKGQAESSSKEANTAGDYAT 246
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1054 RAHAAQTKASASVEAAKEEAAHYAVELEKMRDRYEKSQVELRKLQDTDTF 1103
Cdd:PHA00430 247 KAAASASAAHASEVNAANSATAAATSANRAKQQADRAKTEADKLGNMNGF 296
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
343-614 |
7.98e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 44.56 E-value: 7.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 343 QEILAMAAKMKTLEEQHQDYQRHIAVLKESLCAKE--EHYnmlQTDVEEMRARLEEKNRLIEkKTQGTLQTVQERNRLT- 419
Cdd:COG3096 313 RELEELSARESDLEQDYQAASDHLNLVQTALRQQEkiERY---QEDLEELTERLEEQEEVVE-EAAEQLAEAEARLEAAe 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 420 SELTELKDHMDIKDRKISVLQRK------------------------IENLEDLL-------KEKDNQVDMARARLSAMQ 468
Cdd:COG3096 389 EEVDSLKSQLADYQQALDVQQTRaiqyqqavqalekaralcglpdltPENAEDYLaafrakeQQATEEVLELEQKLSVAD 468
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 469 AHHSSSEGALTSLEEAIGDKEKQMA---------QLRDQRDRAEHEKQEERDLHEREVADYkiKLRAAESEVEKLQTRLE 539
Cdd:COG3096 469 AARRQFEKAYELVCKIAGEVERSQAwqtarellrRYRSQQALAQRLQQLRAQLAELEQRLR--QQQNAERLLEEFCQRIG 546
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2329048320 540 RAVTERERLEIKLEASQSELGKSKAELEKATCEMGRSSADWESTKQRIARLElenERLKHDLERSQVLMQLEEQT 614
Cdd:COG3096 547 QQLDAAEELEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELA---ARAPAWLAAQDALERLREQS 618
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
413-644 |
8.56e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.60 E-value: 8.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 413 QERNRLTSELTELKDHMDIKDRKISVLQRKIENLEDLLKEKDNQVDMARARLSAMQAHHSSSEGALTSLEEAIGDKEKQM 492
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 493 AQLRDQRdraeheKQEERDLHEREVADYKIKLRAAES--EVEKLQTRLERAVTERERLEIKLEASQSELGKSKAELEKAT 570
Cdd:COG4942 100 EAQKEEL------AELLRALYRLGRQPPLALLLSPEDflDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAER 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2329048320 571 CEMGRSSADWESTKQRIARLELENERLKHDLERSQvlmQLEEQTTLHKTTFGRTTMTTSQELDRAQERADKASA 644
Cdd:COG4942 174 AELEALLAELEEERAALEALKAERQKLLARLEKEL---AELAAELAELQQEAEELEALIARLEAEAAAAAERTP 244
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
267-644 |
8.66e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 44.56 E-value: 8.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 267 LQREISILRETIKDLECRVETQKQtliaRDEsIKKLLE----MLQAKGMGKEEERQMFQQMQAMAQKQLDEFRLEIQRRD 342
Cdd:PRK04863 232 FQDMEAALRENRMTLEAIRVTQSD----RDL-FKHLITestnYVAADYMRHANERRVHLEEALELRRELYTSRRQLAAEQ 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 343 QEILAMAAKM-------KTLEEQHQDYQRHIAVLKESLCA--KEEHYnmlQTDVEEMRARLEEKNRLIEKKTQGTL---- 409
Cdd:PRK04863 307 YRLVEMARELaelneaeSDLEQDYQAASDHLNLVQTALRQqeKIERY---QADLEELEERLEEQNEVVEEADEQQEenea 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 410 ---QTVQERNRLTSELTELKDHMDIKDRK-------ISVLQR----------KIENLEDLL-------KEKDNQVDMARA 462
Cdd:PRK04863 384 raeAAEEEVDELKSQLADYQQALDVQQTRaiqyqqaVQALERakqlcglpdlTADNAEDWLeefqakeQEATEELLSLEQ 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 463 RLSAMQAHHSSSEGALTSLEEAIGDKEKQMA---------QLRDQRDRAEHEKQEERDLHE------------REVADYK 521
Cdd:PRK04863 464 KLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAwdvarellrRLREQRHLAEQLQQLRMRLSEleqrlrqqqraeRLLAEFC 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 522 IKLRAAESEVEKLQTRLERAVTERERLEIKLE---ASQSELGKSKAELEKATCEMGRSSADWESTKQRIARLElenERLK 598
Cdd:PRK04863 544 KRLGKNLDDEDELEQLQEELEARLESLSESVSearERRMALRQQLEQLQARIQRLAARAPAWLAAQDALARLR---EQSG 620
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 2329048320 599 HDLERSQVLMQLEEQTTLHKTTFGRTTMTTSQELDRAQERADKASA 644
Cdd:PRK04863 621 EEFEDSQDVTEYMQQLLERERELTVERDELAARKQALDEEIERLSQ 666
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
331-544 |
9.32e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 9.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 331 LDEFRLEIQRRDQEILAMAAKMKTLEEQHQDYQRhiavlKESLCAKEEHYNMLQTDVEEMRARLEEKNRLIEK--KTQGT 408
Cdd:COG4913 612 LAALEAELAELEEELAEAEERLEALEAELDALQE-----RREALQRLAEYSWDEIDVASAEREIAELEAELERldASSDD 686
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 409 LQTVQER-NRLTSELTELKDHMDIKDRKISVLQRKIENLEDLLKEKDNQVDmararlsamQAHHSSSEGALTSLEEaigd 487
Cdd:COG4913 687 LAALEEQlEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLE---------AAEDLARLELRALLEE---- 753
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 2329048320 488 kekqmaqLRDQRDRAEHEKQEERDLHERevadykikLRAAESEVEKLQTRLERAVTE 544
Cdd:COG4913 754 -------RFAAALGDAVERELRENLEER--------IDALRARLNRAEEELERAMRA 795
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
629-940 |
1.14e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 43.35 E-value: 1.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 629 SQELDRAQERADKASAELRRTQAELRVTQGETEKRFSDAERAREEAAALQEKLEKSQGEVYRLKAKLENAQGEQESLRQE 708
Cdd:COG4372 30 SEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEE 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 709 LEKAQSGVSRIHADRDRAFSEVEKIKEEMERTQATLGKSQLQHEKLQNSLDKAQNEVDHLQDKLDKACTENRRLVLEKEK 788
Cdd:COG4372 110 AEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEAEQALDELL 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 789 LTYDYDNLQSQLDKALGQAARMQKERETLSLDTDRIREKLEKTQVQLGRIQKERDQFSDELETLKERSESAQTLLMKAAR 868
Cdd:COG4372 190 KEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAILV 269
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2329048320 869 DREAMQTDLEVLKERYEKSHAIQQKLQMERDDAVTEVEILKEKLDKALYASQKLIDEKDTSNKEFEKMLEKY 940
Cdd:COG4372 270 EKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAELAD 341
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
332-915 |
1.17e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 43.80 E-value: 1.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 332 DEFRLEIQRRDQEILAMAAKMKTLEEQHQDYQRHIAVLKESLCAKEEHYNMLQTDVEEMRARLEEKNRLIEKKTQGTLQT 411
Cdd:TIGR00618 155 AQFLKAKSKEKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREA 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 412 VQERNRLTSELTELKDHMDIKDRK---ISVLQRKIENLEDLLKEKDNQ---VDMAR--ARLSAMQAHHSSSEGALTSLEE 483
Cdd:TIGR00618 235 LQQTQQSHAYLTQKREAQEEQLKKqqlLKQLRARIEELRAQEAVLEETqerINRARkaAPLAAHIKAVTQIEQQAQRIHT 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 484 AIGDKEKQMAQLRDQRDRAEHEKQ--EERDLHEREVADYKIKLRAAESEVEKLQTRLERAVTERERL---EIKLEASQSE 558
Cdd:TIGR00618 315 ELQSKMRSRAKLLMKRAAHVKQQSsiEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIhtlQQQKTTLTQK 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 559 LGKSKAELEKATCEMGRssadwestkqrIARLELENERLKHDLERSQVLMQLEEQTTLHKTTFGRTTMTTSQELDRAQER 638
Cdd:TIGR00618 395 LQSLCKELDILQREQAT-----------IDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQE 463
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 639 ADKASAELRRTQAELRVTQGETEKRFSDAERAREEAAALQEKLEKSQGEVYRLKAKLENAQGEQ---ESLRQELEKAQSG 715
Cdd:TIGR00618 464 SAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTrrmQRGEQTYAQLETS 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 716 VSRIHADRDRAFSEVEKIKEEMERTQATLGKSQLQHEKLQNSLDKAQNEVDHLQDKLD-------KACTENRRLVLEKEK 788
Cdd:TIGR00618 544 EEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEklseaedMLACEQHALLRKLQP 623
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 789 LTYDYDNLQSQLDKALGQA-ARMQKERETLSLDTDRIREKLEKTQVQLGRIQKERDQFSDELETLKERSESAQTLLmkaA 867
Cdd:TIGR00618 624 EQDLQDVRLHLQQCSQELAlKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEML---A 700
|
570 580 590 600
....*....|....*....|....*....|....*....|....*...
gi 2329048320 868 RDREAMQTDLEVLKERYEKSHAIQQKLQMERDDAVTEVEILKEKLDKA 915
Cdd:TIGR00618 701 QCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKEL 748
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
263-1125 |
1.27e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 43.81 E-value: 1.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 263 ENDHLQREISILRETIKDLECRVETQKQTLIARDESIKKLLE---MLQAKGMGKEEERQMFQQMQAMAQKQLDEFRLEIQ 339
Cdd:pfam02463 181 ETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEeeyLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEI 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 340 RRDQEILAMAAKMKTLEEQHQDYQRHIAVLKESLCAKEEhynmLQTDVEEMRARLEEKNRLIEKKTQGTLQTVQERNRLT 419
Cdd:pfam02463 261 EKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELK----SELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEE 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 420 SEltELKDHMDIKDRKISVLQRKIENLEDLLkEKDNQVDMARARLSAMQAHHSSSEGALTSLEEAIGDKEKQMAQLRDQR 499
Cdd:pfam02463 337 IE--ELEKELKELEIKREAEEEEEEELEKLQ-EKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLEL 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 500 draeheKQEERDLHEREVADYKIKLRAAESEVEKLQTRLERAVTERERLEIKLEASQSELGKSKAELEKATCEMGRSSad 579
Cdd:pfam02463 414 ------ARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQ-- 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 580 wESTKQRIARLELENERLKHDLERSQVLMQLEEQTTLHKTTFGRTTMTTSQELDRAQERADKASAELRRTQAELRVTQGE 659
Cdd:pfam02463 486 -LELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQ 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 660 TEKR---FSDAERAREEAAALQEKLEKSQGEVYRLKAKLENAQGEQESLRQELEKAQSGVSRIHADRDRAFSEVEKIKEE 736
Cdd:pfam02463 565 KLVRaltELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAK 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 737 MERTQATlgkSQLQHEKLQNSLDKAQNEVDHLQDKLDKACTENRRLVLEKEKLTYDYDNLQSQLDKALGQAARMQKEREt 816
Cdd:pfam02463 645 ESGLRKG---VSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAE- 720
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 817 lSLDTDRIREKLEKTQVQLGRIQKERDQFSDELETLKERSESAQtllmKAARDREAMQTDLEVLKERYEKSHAIQQKLQM 896
Cdd:pfam02463 721 -ELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKE----EEKSELSLKEKELAEEREKTEKLKVEEEKEEK 795
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 897 ERDDAVTEVEILKEKLDKALYASQKLIDEKDTSNKEFEKMLEKYDRAQNEIYRLQSRCDTAEADRARLEVEAERSGLAAS 976
Cdd:pfam02463 796 LKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLK 875
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 977 KAREDLRKLQDESTRLQEACDRAALQLSRAKECEDNARSELEHSRDRFDKLQTDIRRAQGEKEHFQSELERVTYELERAH 1056
Cdd:pfam02463 876 EEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNK 955
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2329048320 1057 AAQTKASASVEAAKEEAAhYAVELEKMRDRYEKSQVELRKLQDTDTFGRETRRLKEENERLREKLDKTL 1125
Cdd:pfam02463 956 EEEEERNKRLLLAKEELG-KVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQRLKEFL 1023
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
383-548 |
1.44e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.47 E-value: 1.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 383 LQTDVEEMRARLE---EKNRLIEKKTQGTlQTVQERNRLTSELTELKDHMDIKDRKISVLQRKIENLEDLLKE--KDNQV 457
Cdd:COG3206 187 LRKELEEAEAALEefrQKNGLVDLSEEAK-LLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPEllQSPVI 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 458 DMARARLSAMQAhhsssegALTSLEEAIGDKEKQMAQLRDQRDRAEHEKQEERdlhEREVADYKIKLRAAESEVEKLQTR 537
Cdd:COG3206 266 QQLRAQLAELEA-------ELAELSARYTPNHPDVIALRAQIAALRAQLQQEA---QRILASLEAELEALQAREASLQAQ 335
|
170
....*....|.
gi 2329048320 538 LERAVTERERL 548
Cdd:COG3206 336 LAQLEARLAEL 346
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
903-1394 |
1.49e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.51 E-value: 1.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 903 TEVEILKEKLDKALYASQKLIDEKDTSNKEFEKMLEKYDRAQNEIYRLQSRCDTAEADRARLEVEAERSGLAASKAREDL 982
Cdd:PRK03918 172 KEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 983 RKLQDESTRLQEACDRAALQLSRAKECEDNAR--SELEHSRDRFDKLqtdirraqgekEHFQSELERVTYELERAHAAQT 1060
Cdd:PRK03918 252 GSKRKLEEKIRELEERIEELKKEIEELEEKVKelKELKEKAEEYIKL-----------SEFYEEYLDELREIEKRLSRLE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1061 KASASVEAAKEEAAHYAVELEKMRDRYEKSQVELRKLQDTDTFGRETRRLKEENERLREKLdkTLMELETIRGKSQYESE 1140
Cdd:PRK03918 321 EEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRL--TGLTPEKLEKELEELEK 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1141 SFEKYKDKYEKIEMEVQNMESKLHETSLQL---------------ELSKGEVAKMLANQEKQRSELERAHIEREKARDKH 1205
Cdd:PRK03918 399 AKEEIEEEISKITARIGELKKEIKELKKAIeelkkakgkcpvcgrELTEEHRKELLEEYTAELKRIEKELKEIEEKERKL 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1206 EKLLKEVDRLRLQQSSVSPgdpvrastssssalsagERQEIDRLRDrLEKALQSRDATELEA-GRLAKELEKAQMHLAKQ 1284
Cdd:PRK03918 479 RKELRELEKVLKKESELIK-----------------LKELAEQLKE-LEEKLKKYNLEELEKkAEEYEKLKEKLIKLKGE 540
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1285 QENTESTRIEFERMGAELGRLHDRLEKAEAEREALRQANRSGGAGAAPhpQLEKHVQKLESDVKQLaMEREQLVLQLEKS 1364
Cdd:PRK03918 541 IKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVE--ELEERLKELEPFYNEY-LELKDAEKELERE 617
|
490 500 510
....*....|....*....|....*....|
gi 2329048320 1365 QEILMNFQKELQNAEAELQKTREENRKLRN 1394
Cdd:PRK03918 618 EKELKKLEEELDKAFEELAETEKRLEELRK 647
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
677-1092 |
1.55e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.22 E-value: 1.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 677 LQEKLEKSQGEVYRLKAKL-ENAQGEQESLRQELEKAQSGVSRIHADRDRaFSEVEKIKEEMERTQATLGKSQLQHEKLQ 755
Cdd:COG4717 47 LLERLEKEADELFKPQGRKpELNLKELKELEEELKEAEEKEEEYAELQEE-LEELEEELEELEAELEELREELEKLEKLL 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 756 NSLD------KAQNEVDHLQDKLDKA---CTENRRLVLEKEKLTYDYDNLQSQLDKAL--------GQAARMQKERETLS 818
Cdd:COG4717 126 QLLPlyqeleALEAELAELPERLEELeerLEELRELEEELEELEAELAELQEELEELLeqlslateEELQDLAEELEELQ 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 819 LDTDRIREKLEKTQVQLGRIQKERDQFSDELETLKERSESAQ---------TLLMKAARDREAMQTDLEVLK-------- 881
Cdd:COG4717 206 QRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEarlllliaaALLALLGLGGSLLSLILTIAGvlflvlgl 285
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 882 -----ERYEKSHAIQQKLQMERDDAVTEVEILKEKLDKALYASQKLIDEKDTSNKEFEKMLEKYDRAQNEI------YRL 950
Cdd:COG4717 286 lallfLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAeeleeeLQL 365
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 951 QSRCDTAEADRARLEVEAERSGLAASKAREDLRKLQDESTRLQEACDRAA--LQLSRAKECEDNARSELEHSRDRFDKLQ 1028
Cdd:COG4717 366 EELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLgeLEELLEALDEEELEEELEELEEELEELE 445
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2329048320 1029 TDIRRAQGEKEHFQSELERVTYELERAHAAQTKASASVEAAKEEAAHYAVE-----LEKMRDRYEKSQV 1092
Cdd:COG4717 446 EELEELREELAELEAELEQLEEDGELAELLQELEELKAELRELAEEWAALKlalelLEEAREEYREERL 514
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
343-568 |
1.59e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 43.08 E-value: 1.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 343 QEILAMAAKMKTLEEQHQDYQRHIAVLKESLCAK-EEHYNMLQTDVEEMRARLEEKNRLIEKktqgTLQTVQERNRLTSE 421
Cdd:PHA02562 181 QQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENiARKQNKYDELVEEAKTIKAEIEELTDE----LLNLVMDIEDPSAA 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 422 LTELKDHMDIKDRKISVLQRKIENLED---------LLKEKDNQVDMARARLSAMQahhssseGALTSLEEAIGDKEKQM 492
Cdd:PHA02562 257 LNKLNTAAAKIKSKIEQFQKVIKMYEKggvcptctqQISEGPDRITKIKDKLKELQ-------HSLEKLDTAIDELEEIM 329
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2329048320 493 AQLRDQRDRAeHEKQEERDLHEREVADYKIKLRAAESEVEKLQtrlERAVTERERLEiKLEASQSELGKSKAELEK 568
Cdd:PHA02562 330 DEFNEQSKKL-LELKNKISTNKQSLITLVDKAKKVKAAIEELQ---AEFVDNAEELA-KLQDELDKIVKTKSELVK 400
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
377-852 |
1.70e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.09 E-value: 1.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 377 EEHYNMLQTDVEEMRARLEEKNRLIEKKTQGTLQTVQERNRLTSELTELKDHMDIKDRKISVLQRKIENL---------- 446
Cdd:TIGR04523 224 KKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLkseisdlnnq 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 447 --EDLLKEKDNQVDMARARLSAMQAHHSSSEGALTSLEEAIGDKEKQMAQLRD---QRDRAEHEKQEERDLHEREVADYK 521
Cdd:TIGR04523 304 keQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESensEKQRELEEKQNEIEKLKKENQSYK 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 522 IKLRAAESEVEKLQTRLERAVTERERLEIKLEASQSE------------------------LGKSKAELEKATCEMGRSS 577
Cdd:TIGR04523 384 QEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEkellekeierlketiiknnseikdLTNQDSVKELIIKNLDNTR 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 578 adwESTKQRIARLELENERLKHDLERSQvlMQLEEQTTLHKTTFGRTtmttsQELDRAQERADKASAELRRTQAELRVTQ 657
Cdd:TIGR04523 464 ---ESLETQLKVLSRSINKIKQNLEQKQ--KELKSKEKELKKLNEEK-----KELEEKVKDLTKKISSLKEKIEKLESEK 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 658 GETEKRFSDAERAREEA------AALQEKLEKSQGEVYRLKAKLENAQGEQESLRQELEKAQSGVSRIHADRDRAFSEVE 731
Cdd:TIGR04523 534 KEKESKISDLEDELNKDdfelkkENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKIS 613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 732 KIKEEMERTQATLGKSQLQHEKLQNSLDKAQNEVDHLQDKLDKACTENRRLVLEKEKLTYDYDNLqSQLDKALGQAARMQ 811
Cdd:TIGR04523 614 SLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESKTKIDDI-IELMKDWLKELSLH 692
|
490 500 510 520
....*....|....*....|....*....|....*....|.
gi 2329048320 812 KERETLSLDTDRIREKLEKTQVQLGRIQKERDQFSDELETL 852
Cdd:TIGR04523 693 YKKYITRMIRIKDLPKLEEKYKEIEKELKKLDEFSKELENI 733
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
803-1074 |
1.91e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.83 E-value: 1.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 803 ALGQAARMQKERETLsldtDRIREKLEKTQVQLGRIQKERDQFSDELETLKERSESAQTLLMKAARDREAMQTDLevlke 882
Cdd:COG4942 15 AAAQADAAAEAEAEL----EQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAEL----- 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 883 ryekshaiqQKLQMERDDAVTEVEILKEKLDKALYASQKLidekdtSNKEFEKMLEKYDRAQNEIYRLQSRCDTAEADRA 962
Cdd:COG4942 86 ---------AELEKEIAELRAELEAQKEELAELLRALYRL------GRQPPLALLLSPEDFLDAVRRLQYLKYLAPARRE 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 963 RLeveaersglaaskarEDLRKLQDESTRLQEACDRAALQLSRAKECEDNARSELEHSRDRFDKLQTDIRRAQGEKEHFQ 1042
Cdd:COG4942 151 QA---------------EELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAEL 215
|
250 260 270
....*....|....*....|....*....|..
gi 2329048320 1043 SELERVTYELERAHAAQTKASASVEAAKEEAA 1074
Cdd:COG4942 216 AELQQEAEELEALIARLEAEAAAAAERTPAAG 247
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1534-1769 |
2.04e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.00 E-value: 2.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1534 KELEKVRGELQAACTERDRFQQQLELLVTELEKSKMSNQEQAKQLQTAQQQVQQLQQQVQQLQQQMQQLQQAASAGAGAT 1613
Cdd:COG1196 260 AELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEEL 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1614 DVQRQQLEQQQKQLEEVRKQIDNQAKATEGERKIIDEQRKQIDAKRKDIEEKEKKMAEfdvQLRKRKEQMDQLEKSLQTQ 1693
Cdd:COG1196 340 EELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAE---LAAQLEELEEAEEALLERL 416
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2329048320 1694 GGGAAAAGELNKKLMDTQRQLEACVKELQNTKEEHKKAATETERLLQLVQMSQEEQNAKEKTIMDLQQALKIAQAK 1769
Cdd:COG1196 417 ERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAAR 492
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
641-1309 |
2.48e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 42.65 E-value: 2.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 641 KASAELRRTQAELRVTQGETEKRFSDAERAREEAAALQEKLEKSQgEVYRLKAKLENAQGEQESLRQELEKAQSGVSRIH 720
Cdd:TIGR00618 226 KELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIE-ELRAQEAVLEETQERINRARKAAPLAAHIKAVTQ 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 721 ADRDRAFSEVEKIKEEMERTQ-----ATLGKSQLQHEKLQNSLDKAQNEVDHLQ----------DKLDKACTENRRLVLE 785
Cdd:TIGR00618 305 IEQQAQRIHTELQSKMRSRAKllmkrAAHVKQQSSIEEQRRLLQTLHSQEIHIRdahevatsirEISCQQHTLTQHIHTL 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 786 KEKLTYDYDNLQSqLDKALGQAARMQKERETLSLDTDRIREKL---EKTQVQLGRIQKERDQFSDELETLKERSESAQTL 862
Cdd:TIGR00618 385 QQQKTTLTQKLQS-LCKELDILQREQATIDTRTSAFRDLQGQLahaKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQE 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 863 LMKAARDREAMQTDLEVLKERYEKSHAIQQKLQMERDDAVTEVEILKEKLDKALYAS----------QKLIDEKDTSNKE 932
Cdd:TIGR00618 464 SAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIdnpgpltrrmQRGEQTYAQLETS 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 933 FEKMLEKYDRAQNEIYRLQSRCDTAEADRARLEVEAERSGLAASKAREDLRKLQDESTRLQEACDRAALQLSRAKEcedn 1012
Cdd:TIGR00618 544 EEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLR---- 619
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1013 arsELEHSRDRFDKLQTD---IRRAQGEKEHFQSELERVTYELERAHAAQTKasasvEAAKEEAAHYAVELEKMRDRYEK 1089
Cdd:TIGR00618 620 ---KLQPEQDLQDVRLHLqqcSQELALKLTALHALQLTLTQERVREHALSIR-----VLPKELLASRQLALQKMQSEKEQ 691
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1090 SQVELRKLQDTDTFGRETRRLKEENERLREKLDKTLMEL-ETIRGKSQYESESFEKYKDKYEKIEMEVQNMESKLHETSL 1168
Cdd:TIGR00618 692 LTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLgSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVT 771
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1169 QLELSKGEVAKMLANQEKQRSELERAHIEREKARDKHEKLLKEVDRLRLQQSSVSPGDpvRASTSSSSALSAGERQEIDR 1248
Cdd:TIGR00618 772 AALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQE--EEQFLSRLEEKSATLGEITH 849
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1249 LRDRLEKALQSRDATELEAGRLAKELEKAQ--------------------------MHLAKQQENTESTRIEFERMGAEL 1302
Cdd:TIGR00618 850 QLLKYEECSKQLAQLTQEQAKIIQLSDKLNginqikiqfdgdalikflheitlyanVRLANQSEGRFHGRYADSHVNARK 929
|
....*..
gi 2329048320 1303 GRLHDRL 1309
Cdd:TIGR00618 930 YQGLALL 936
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
163-567 |
2.49e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 42.70 E-value: 2.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 163 QNTDLQRELGNLKRELE-LTNQKLGSSMHSIKTFWSPELKKERALRKEESAKYSLI---NDQLKLLSTENQKQAMLVRQL 238
Cdd:TIGR04523 282 KIKELEKQLNQLKSEISdLNNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIIsqlNEQISQLKKELTNSESENSEK 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 239 EEELRlrmrqpnlEMQQQMEAIYAENDHLQREISILRETIKDLECRVETQKQTLIARDESIKKLlemlqakgmgkEEERQ 318
Cdd:TIGR04523 362 QRELE--------EKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKL-----------QQEKE 422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 319 MFQQMQAMAQKQLDEFRLEIQRRDQEILAMAAKMKTLEEQHQDYQRHIAVLKESlcakeehYNMLQTDVEEMRARLEEKN 398
Cdd:TIGR04523 423 LLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRS-------INKIKQNLEQKQKELKSKE 495
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 399 RLIEKKTQGTLQTVQERNRLTSELTELKDHMDIKDRKISVLQRKIENLEDLLKEKDnqvdmararlsamqahhssSEGAL 478
Cdd:TIGR04523 496 KELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDD-------------------FELKK 556
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 479 TSLEEAIGDKEKQMAQLR---DQRDRAEHEKQEERDLHEREVADYKIKLRAAESEVEKLQTRLERAVTERERLEIKLEAS 555
Cdd:TIGR04523 557 ENLEKEIDEKNKEIEELKqtqKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNI 636
|
410
....*....|..
gi 2329048320 556 QSELGKSKAELE 567
Cdd:TIGR04523 637 KSKKNKLKQEVK 648
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
701-1053 |
2.56e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 42.20 E-value: 2.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 701 EQESLRQELEKAQSGVSRIHADRDRAFSEVEKIKEEMERTQATLGKSQLQHEKLQNSLDKAQNEVDHLQDKLDKACTENR 780
Cdd:COG4372 11 ARLSLFGLRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQ 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 781 RLVLEKEKLTYDYDNLQSQLDKALGQAARMQKERETLSLDTDRIREKLEKTQVQLGRIQKERDQFSDELETLKERSESAQ 860
Cdd:COG4372 91 AAQAELAQAQEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALE 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 861 TLL--MKAARDREAMQTDLEVLKERYEKSHAIQQKLQMERDD-AVTEVEILKEKLDKALYASQKLIDEKDTSNKEFEKML 937
Cdd:COG4372 171 QELqaLSEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLpRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEE 250
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 938 EKYDRAQNEIYRLQSRCDTAEADRARLEVEAERSGLAASKAREDLRKLQDESTRLQEACDRAALQLSRAKECEDNARSEL 1017
Cdd:COG4372 251 LLEEVILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLEL 330
|
330 340 350
....*....|....*....|....*....|....*.
gi 2329048320 1018 EHSRDRFDKLQTDIRRAQGEKEHFQSELERVTYELE 1053
Cdd:COG4372 331 ALAILLAELADLLQLLLVGLLDNDVLELLSKGAEAG 366
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
1246-1457 |
2.56e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 42.20 E-value: 2.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1246 IDRLRDRLEKALQSRDATELEAGRLAKELEKAQMHLAKQQENTESTRIEFERMGAELGRLHDRLEKAEAEREALRQANRS 1325
Cdd:COG4372 26 IAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELES 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1326 GGAGAAphpQLEKHVQKLESDVKQLAMEREQLVLQLEKSQEILMNFQKELQNAEAELQKTREENRKLRNGHQVPPVAAPP 1405
Cdd:COG4372 106 LQEEAE---ELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEAE 182
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2329048320 1406 AGPSPAEFQAMQKEIQTLQQKLQESERALQAAGPQQAQAAAAAGASREEIEQ 1457
Cdd:COG4372 183 QALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLA 234
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
302-697 |
2.67e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 42.57 E-value: 2.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 302 LLEMLQAKGMGKEEERQMFQQMQAMAQKQLDEFRLEIQRRDQEILAMAAKMKTLEEQHQDYQRHIAVLKeslcakeEHYN 381
Cdd:pfam07888 46 LLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEELS-------EEKD 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 382 MLQTDVEEMRARLEEKNRLIEKKTQGTLQTVQERNRLTSELTELKDHMDIKDRKISVLQRKIENLEDLLKEKDNQVDMAR 461
Cdd:pfam07888 119 ALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRSLSKEFQELR 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 462 ARLSAMQAHHSSSEGALTSLEEAIGDKEKQMAQLrdqrdraEHEKQEERDLHERevadykikLRAAESEVEKLQTRLERA 541
Cdd:pfam07888 199 NSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAEN-------EALLEELRSLQER--------LNASERKVEGLGEELSSM 263
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 542 VTERERLEIKLEASQSELGKSKAELEKATCEMGRSSADWESTKQRIAR-LELENERLkhdLERSQVLMQLEEQTTLHKTT 620
Cdd:pfam07888 264 AAQRDRTQAELHQARLQAAQLTLQLADASLALREGRARWAQERETLQQsAEADKDRI---EKLSAELQRLEERLQEERME 340
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2329048320 621 FGRTTMTTSQELDRAQERADKASAELRRTQAELRVTQGETEKRFSDAERAREEAAALQEKLEKSQGEVYRLKAKLEN 697
Cdd:pfam07888 341 REKLEVELGREKDCNRVQLSESRRELQELKASLRVAQKEKEQLQAEKQELLEYIRQLEQRLETVADAKWSEAALTST 417
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
629-859 |
2.75e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 2.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 629 SQELDRAQERADKASAELRRTQAELRVTQGETEKRFSDAERAREEAAALQEKLEKSQGEVYRLKAKLENAQGEQESLRQE 708
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 709 LEKAQSGVSRIHADRDRAfsevekikeeMERTQATLGKSQLQHEKLQNSLDKAQNEVDHLQDKLDKACTENRRLVLEKEK 788
Cdd:COG4942 99 LEAQKEELAELLRALYRL----------GRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAE 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2329048320 789 LTYDYDNLQSQLDKALGQAARMQKERETLSLDTDRIREKLEKTQVQLGRIQKERDQFSDELETLKERSESA 859
Cdd:COG4942 169 LEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAA 239
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
532-894 |
2.88e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 42.19 E-value: 2.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 532 EKLQTRLERAVTERERLEIKLEASQSELGKSKAELEKATCEMGRSSADWEStkqRIARLELENERLKHDLE----RSQVL 607
Cdd:pfam07888 30 ELLQNRLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELES---RVAELKEELRQSREKHEeleeKYKEL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 608 MQLEEQTTLHKTTFGRTTMTTSQELDRAQERADKASAELRRTQAELRVTQGETEKRFSDAERAREEAAALQEKLEKSQGE 687
Cdd:pfam07888 107 SASSEELSEEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEE 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 688 VYRLKA---KLENAQGEQESLRQELEKAQSGVSRIHADRDRAFSEVEKIKEEMERTQATLGKSQLQHEKLQNSLDKAQNE 764
Cdd:pfam07888 187 LRSLSKefqELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAENEALLEELRSLQERLNASERKVEGLGEELSSMAAQ 266
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 765 VDHLQDKLDKACTENRRLVLEKEKLtydydNLQSQLDKalgqaARMQKERETLSLDTDRIREKLEKTQVQLGR----IQK 840
Cdd:pfam07888 267 RDRTQAELHQARLQAAQLTLQLADA-----SLALREGR-----ARWAQERETLQQSAEADKDRIEKLSAELQRleerLQE 336
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 2329048320 841 ERDQFSDELETLKERSESAQTLLMKAARDREAMQTDLEVLKERYEKSHAIQQKL 894
Cdd:pfam07888 337 ERMEREKLEVELGREKDCNRVQLSESRRELQELKASLRVAQKEKEQLQAEKQEL 390
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
383-589 |
2.96e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.12 E-value: 2.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 383 LQTDVEEMRARLEEKNRLIEKKTQGTLQTVQERNRLTSELTELKDHMDIKDRKISVLQRKIENLEDLLKEkdnqvdmaRA 462
Cdd:COG3883 21 KQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGE--------RA 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 463 RLSAMQAHHSSSEGAL---TSLEEAIGDKEKQMAQLRDQRDRAEHEKQEERDL--HEREVADYKIKLRAAESEVEKLQTR 537
Cdd:COG3883 93 RALYRSGGSVSYLDVLlgsESFSDFLDRLSALSKIADADADLLEELKADKAELeaKKAELEAKLAELEALKAELEAAKAE 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2329048320 538 LERAVTERERLEIKLEASQSELGKSKAELEKATCEMGRSSADWESTKQRIAR 589
Cdd:COG3883 173 LEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAA 224
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
678-1127 |
3.31e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.59 E-value: 3.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 678 QEKLEKSQGEVYRLKAKLENAQGEQESLRQELEKAQSGVSRIHADRDRAFSEVEKIKEEMERTQATLGKSQLQheklqnS 757
Cdd:COG4913 266 AARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGD------R 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 758 LDKAQNEVDHLQDKLDKActENRRLVLEK--EKLTYDYDNLQSQLDKALGQAARMqkeRETLSLDTDRIREKLEKTQVQL 835
Cdd:COG4913 340 LEQLEREIERLERELEER--ERRRARLEAllAALGLPLPASAEEFAALRAEAAAL---LEALEEELEALEEALAEAEAAL 414
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 836 GRIQKERDQFSDELETLKER-------SESAQTLLMKAARDREAmqtDLEVLKE-------------------------- 882
Cdd:COG4913 415 RDLRRELRELEAEIASLERRksniparLLALRDALAEALGLDEA---ELPFVGElievrpeeerwrgaiervlggfaltl 491
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 883 -----------------------RYEKSHAIQQKLQMERDDAVTEVEILKEKLDKAL-YASQKLIDEKDTSNKEFEKMLE 938
Cdd:COG4913 492 lvppehyaaalrwvnrlhlrgrlVYERVRTGLPDPERPRLDPDSLAGKLDFKPHPFRaWLEAELGRRFDYVCVDSPEELR 571
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 939 KYDRA---QNEIYRLQSR--CD-------------TAEADRARLEVEAERSGLAASKAREDLRKLQDESTRLQE------ 994
Cdd:COG4913 572 RHPRAitrAGQVKGNGTRheKDdrrrirsryvlgfDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQErrealq 651
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 995 -------------ACDRAALQLSRAKECEDNARSELEHSRDRFDKLQTDIRRAQGEKEHFQSELERVTYELERAHAAQTK 1061
Cdd:COG4913 652 rlaeyswdeidvaSAEREIAELEAELERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDE 731
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2329048320 1062 ASASVEAA-KEEAAHYAVELEKMRDRYEKSQVELRKLQDtdtFGRETRRLKEENERLREKLDKTLME 1127
Cdd:COG4913 732 LQDRLEAAeDLARLELRALLEERFAAALGDAVERELREN---LEERIDALRARLNRAEEELERAMRA 795
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
709-1317 |
3.50e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 42.36 E-value: 3.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 709 LEKAQSGVSRIHADRDRAFSEVEKIKEEMERTQATLGKSQLQHEKLQNSLDKAQNEVDHLQDKLDKACTENRRLVLEKEK 788
Cdd:PRK03918 160 YENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 789 LTydydnlqsqldkalgqaarmQKERETLSLdtdriREKLEKTQVQLGRIQKERDQFSDELETLKERSEsaqtllmkaar 868
Cdd:PRK03918 240 IE--------------------ELEKELESL-----EGSKRKLEEKIRELEERIEELKKEIEELEEKVK----------- 283
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 869 dreamqtDLEVLKErYEKSHAIQQKLQMERDDAVTEVEILKEKLDKALYASQKLIDEKDTSNKEFEKMLEKYDRAQNEIY 948
Cdd:PRK03918 284 -------ELKELKE-KAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLE 355
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 949 RLQSRCDTAEADRARLEVEAERSGLAASKAREDLRKLQDEstrlqeacdraalqLSRAKECEDNARSELEHSRDRFDKLQ 1028
Cdd:PRK03918 356 ELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEE--------------LEKAKEEIEEEISKITARIGELKKEI 421
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1029 TDIRRAQGEKEHFQSELERVTYELERAHAAQTKASASVEAAKEEAahyavELEKMRDRYEKSQVELRKLQDTDTFGRETR 1108
Cdd:PRK03918 422 KELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEK-----ELKEIEEKERKLRKELRELEKVLKKESELI 496
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1109 RLK---EENERLREKLDKTLMEletirgKSQYESESFEKYKDKYEKIEMEVQNMESKLHETSlQLELSKGEVAKMLANQE 1185
Cdd:PRK03918 497 KLKelaEQLKELEEKLKKYNLE------ELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLE-ELKKKLAELEKKLDELE 569
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1186 KQRSELEraHIEREKARDKHEKLLKEVDRLRlqqssvsPGDPVRASTSSSSALSAGERQEIDRLRDRLEKALQSRDATEL 1265
Cdd:PRK03918 570 EELAELL--KELEELGFESVEELEERLKELE-------PFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEK 640
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|..
gi 2329048320 1266 EAGRLAKELEKAQMHLAkqQENTESTRIEFERMGAELGRLHDRLEKAEAERE 1317
Cdd:PRK03918 641 RLEELRKELEELEKKYS--EEEYEELREEYLELSRELAGLRAELEELEKRRE 690
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
973-1224 |
4.01e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.21 E-value: 4.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 973 LAASKAREDLRKLQDESTRLqeacDRAALQLSRAKECEDnARSELEHSRDRFDKLQTDIRRAQGEKEHFQSELERVTYEL 1052
Cdd:COG4913 218 LEEPDTFEAADALVEHFDDL----ERAHEALEDAREQIE-LLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLEL 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1053 ERAHAAQTKASASVEAAKEEAAhyAVELEKMRDRYEKSQVELRKLQdtdtfGRETRRLKEENERLREKLDKTLMELetir 1132
Cdd:COG4913 293 LEAELEELRAELARLEAELERL--EARLDALREELDELEAQIRGNG-----GDRLEQLEREIERLERELEERERRR---- 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1133 gksqyesesfEKYKDKYEKIEMEVQNMESKLHETSLQLELSKGEVAKMLANQEKQRSELERAhieREKARDKHEKLLKEV 1212
Cdd:COG4913 362 ----------ARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAA---LRDLRRELRELEAEI 428
|
250
....*....|..
gi 2329048320 1213 DRLRLQQSSVSP 1224
Cdd:COG4913 429 ASLERRKSNIPA 440
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
253-763 |
4.36e-03 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 42.05 E-value: 4.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 253 MQQQMEAIYAENDHLQR---EISILRETIKDLECRVETQKQTLIA---RDESIKKLLEMLQAKGMGKEEERQMFQQMQAM 326
Cdd:pfam07111 61 LSQQAELISRQLQELRRleeEVRLLRETSLQQKMRLEAQAMELDAlavAEKAGQAEAEGLRAALAGAEMVRKNLEEGSQR 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 327 AQKQLDEFRLE-----IQRRDQEILAMAAKMKTLEEQHQDYQRHIAVLKESLCAKEEHYNMLQTDVEEMRARLEEKNRLI 401
Cdd:pfam07111 141 ELEEIQRLHQEqlsslTQAHEEALSSLTSKAEGLEKSLNSLETKRAGEAKQLAEAQKEAELLRKQLSKTQEELEAQVTLV 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 402 EKKTQGTLQTVQ----------ERNRLTSELTELKDHMDIKDRKISVLQRKIENLEDLLKEKDNQVDMARARLSAMQAHH 471
Cdd:pfam07111 221 ESLRKYVGEQVPpevhsqtwelERQELLDTMQHLQEDRADLQATVELLQVRVQSLTHMLALQEEELTRKIQPSDSLEPEF 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 472 SSSEGALTS------------LEEAIGDKEKQMAQLRDQrdRAEHEKQEERDLHEREVADYKIKLRAAESEVEK-----L 534
Cdd:pfam07111 301 PKKCRSLLNrwrekvfalmvqLKAQDLEHRDSVKQLRGQ--VAELQEQVTSQSQEQAILQRALQDKAAEVEVERmsakgL 378
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 535 QTRLERAVTERERLEIKLEASQSEL-------GKSKAELEKATCEMGRSSADWESTKQRIARLELENERLKHDLERSQVL 607
Cdd:pfam07111 379 QMELSRAQEARRRQQQQTASAEEQLkfvvnamSSTQIWLETTMTRVEQAVARIPSLSNRLSYAVRKVHTIKGLMARKVAL 458
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 608 MQLEEQTTLHKTTFGRTTMTTSQELDRAQERADKASAELRRTQAELRVTQGET-EKRFSDAERAREEAAALQEKLEKSQG 686
Cdd:pfam07111 459 AQLRQESCPPPPPAPPVDADLSLELEQLREERNRLDAELQLSAHLIQQEVGRArEQGEAERQQLSEVAQQLEQELQRAQE 538
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 687 EVYRLKAKLENA-QGEQES------LRQELEKAQSGVSRIHADRdraFSEVE-KIKEEMERTQATLGKSQLQHEKLQNSL 758
Cdd:pfam07111 539 SLASVGQQLEVArQGQQESteeaasLRQELTQQQEIYGQALQEK---VAEVEtRLREQLSDTKRRLNEARREQAKAVVSL 615
|
....*
gi 2329048320 759 DKAQN 763
Cdd:pfam07111 616 RQIQH 620
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
343-764 |
4.42e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.68 E-value: 4.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 343 QEILAMAAKMKTLEEQHQDYQRHIAVLKEslcaKEEHYNMLQTDVEEMRARLEEKNRLIEKktQGTLQTVQERNRLTSEL 422
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAELQEELEE----LEEELEELEAELEELREELEKLEKLLQL--LPLYQELEALEAELAEL 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 423 TELKDHMDIKDRKISVLQRKIENLEDLLKEKDNQVDMARARLSAMQAH--------HSSSEGALTSLEEAIGDKEKQMAQ 494
Cdd:COG4717 145 PERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEelqdlaeeLEELQQRLAELEEELEEAQEELEE 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 495 LRDQRDRAEHEKQEERDLHEREVADYKIKLRAAESEVEKLQTRLERAVTERERLeIKLEASQSELGKSKAELEKATCEMG 574
Cdd:COG4717 225 LEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGV-LFLVLGLLALLFLLLAREKASLGKE 303
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 575 RSSADWESTKQRIARLELENER----LKHDLERSQVLMQLEEQTTLHKTTFGRTTMTTSQELDRAQERAD---------- 640
Cdd:COG4717 304 AEELQALPALEELEEEELEELLaalgLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAallaeagved 383
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 641 --------KASAELRRTQAELRVTQGETEKRFSDAERAREE--AAALQEKLEKSQGEVYRLKAKLENAQGEQESLRQELE 710
Cdd:COG4717 384 eeelraalEQAEEYQELKEELEELEEQLEELLGELEELLEAldEEELEEELEELEEELEELEEELEELREELAELEAELE 463
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 2329048320 711 KAQSGvsrihADRDRAFSEVEKIKEEMERTQATLGKSQLQHEKLQNSLDKAQNE 764
Cdd:COG4717 464 QLEED-----GELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYREE 512
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
752-867 |
4.55e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 41.82 E-value: 4.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 752 EKLQNSLDKAQNEVDH-LQDKLDKACTENRRLVLEK-EKLTYDYDNLQSQLDKALGQAARMQKERETL------------ 817
Cdd:PRK11281 39 ADVQAQLDALNKQKLLeAEDKLVQQDLEQTLALLDKiDRQKEETEQLKQQLAQAPAKLRQAQAELEALkddndeetretl 118
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 2329048320 818 -SLDTDRIREKLEKTQVQLGRIQKERDQFSDELETLKERSESAQTLLMKAA 867
Cdd:PRK11281 119 sTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANS 169
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
689-908 |
4.83e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.93 E-value: 4.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 689 YRLKAKLENAQGEQESLRQELEKAQSGVSRIHADRdRAFSEVEKI---KEEMERTQATLGKSQLQHEKLQNSLDKAQNEV 765
Cdd:COG3206 164 QNLELRREEARKALEFLEEQLPELRKELEEAEAAL-EEFRQKNGLvdlSEEAKLLLQQLSELESQLAEARAELAEAEARL 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 766 DHLQDKLDKACTENRRLVLEKE--KLTYDYDNLQSQLDKALG-------QAARMQKERETL-SLDTDRIREKLEKTQVQL 835
Cdd:COG3206 243 AALRAQLGSGPDALPELLQSPViqQLRAQLAELEAELAELSArytpnhpDVIALRAQIAALrAQLQQEAQRILASLEAEL 322
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2329048320 836 GRIQKERDQFSDELETLKERSESaqtlLMKAARDREAMQTDLEVLKERYEKSHAIQQKLQMERDDAVTEVEIL 908
Cdd:COG3206 323 EALQAREASLQAQLAQLEARLAE----LPELEAELRRLEREVEVARELYESLLQRLEEARLAEALTVGNVRVI 391
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
726-1309 |
4.93e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 41.75 E-value: 4.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 726 AFSEVEKIKEEMERTQATLGKSQLQHEKLQNSLDKAQNEVDHLQDKLDKACTENR-RLVLEKEKLTYDYDNLQSQLDKAL 804
Cdd:pfam12128 249 EFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRdELNGELSAADAAVAKDRSELEALE 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 805 GQAARMQKER-ETLSLDTDRirekLEKTQVQLGRIQKERDQFSDELETLKERSESAQTLL-MKAARDREAMQTDLEVLKE 882
Cdd:pfam12128 329 DQHGAFLDADiETAAADQEQ----LPSWQSELENLEERLKALTGKHQDVTAKYNRRRSKIkEQNNRDIAGIKDKLAKIRE 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 883 RYEKSHA--------IQQKLQMERDDAVTEVEILKEKLDKALYASQKLIDEKDTSNKEFEkmlekyDRAQNeiyrlQSRC 954
Cdd:pfam12128 405 ARDRQLAvaeddlqaLESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLL------QLENF-----DERI 473
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 955 DTA--EADRARLEVEAERSGLAASKARED--LRKLQDESTRLQE---ACDRAALQL------------SRAKECEDN--- 1012
Cdd:pfam12128 474 ERAreEQEAANAEVERLQSELRQARKRRDqaSEALRQASRRLEErqsALDELELQLfpqagtllhflrKEAPDWEQSigk 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1013 -ARSELEHSRD----------------------------------------RFDKLQTDIRRAQGEKEHFQSELERVTYE 1051
Cdd:pfam12128 554 vISPELLHRTDldpevwdgsvggelnlygvkldlkridvpewaaseeelreRLDKAEEALQSAREKQAAAEEQLVQANGE 633
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1052 LERAHAAQTKASASVEAAKEEAAHYAVELEKMRDRYEKSQVELRKLQDTD--TFGRETRRLKEENERLREKLDKTLMELE 1129
Cdd:pfam12128 634 LEKASREETFARTALKNARLDLRRLFDEKQSEKDKKNKALAERKDSANERlnSLEAQLKQLDKKHQAWLEEQKEQKREAR 713
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1130 TIRGKSQYESESFEKYKDKYEKIEMEVQNMESKLHETSLQLEL-----SKGEVAKMLANQEKQRSELERAhIEReKARDK 1204
Cdd:pfam12128 714 TEKQAYWQVVEGALDAQLALLKAAIAARRSGAKAELKALETWYkrdlaSLGVDPDVIAKLKREIRTLERK-IER-IAVRR 791
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1205 HEKLLKEvdrlRLQQSSVSPGDPVRASTSSSSALSAGE-RQEIDRL----RDRLEKALQSRDATELEAGRLAKELEK--- 1276
Cdd:pfam12128 792 QEVLRYF----DWYQETWLQRRPRLATQLSNIERAISElQQQLARLiadtKLRRAKLEMERKASEKQQVRLSENLRGlrc 867
|
650 660 670
....*....|....*....|....*....|....*...
gi 2329048320 1277 -----AQMHLAKQQENTESTRIEFERMGAELGRLHDRL 1309
Cdd:pfam12128 868 emsklATLKEDANSEQAQGSIGERLAQLEDLKLKRDYL 905
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
791-947 |
5.16e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.68 E-value: 5.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 791 YDYDNLQSQLDKALGQAARMQKERETLSLDTDRIREKLEKTQVQLGRIQKERDQFSDELETLKERSESAQTLLM--KAAR 868
Cdd:COG1579 10 LDLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGnvRNNK 89
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2329048320 869 DREAMQTDLEVLKERYEKSHAIQQKLQMERDDAVTEVEILKEKLDKALYASQKLIDEKDTSNKEFEKMLEKYDRAQNEI 947
Cdd:COG1579 90 EYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREEL 168
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1054-1212 |
5.82e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 41.30 E-value: 5.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1054 RAHAAQTKASASVEAAKEEAAHYAVELE-KMRDRYE--KSQVELRKLQDTDTFGRETRRLKEENERLREK---LDKTLME 1127
Cdd:PRK12704 32 KIKEAEEEAKRILEEAKKEAEAIKKEALlEAKEEIHklRNEFEKELRERRNELQKLEKRLLQKEENLDRKlelLEKREEE 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1128 LETIRGKSQYESESFEKYKDKYEKIEMEVQNmesKLHETSlqlELSKGEVAKMLANQEKQRSELERAHIER---EKARDK 1204
Cdd:PRK12704 112 LEKKEKELEQKQQELEKKEEELEELIEEQLQ---ELERIS---GLTAEEAKEILLEKVEEEARHEAAVLIKeieEEAKEE 185
|
....*...
gi 2329048320 1205 HEKLLKEV 1212
Cdd:PRK12704 186 ADKKAKEI 193
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
587-912 |
6.07e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 41.42 E-value: 6.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 587 IARLELENERLKHDLERSQVLMQLEEQTTLHKTTFGRTTMTTSQELDRAQERADKASAELRRTQAELRVTQGETEKRfsd 666
Cdd:pfam07888 26 VPRAELLQNRLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEK--- 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 667 aerareeaaalQEKLEKSQGEVYRLKAKLENAQGEQESLRQELEKAQSGVSRIHADRDrafSEVEKIKEEMERTQATLGK 746
Cdd:pfam07888 103 -----------YKELSASSEELSEEKDALLAQRAAHEARIRELEEDIKTLTQRVLERE---TELERMKERAKKAGAQRKE 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 747 SQLQHEKLQNSLDKAQNEVDHLQDKLDKActenRRLVLEKEKLTYDYDNLQSQLDKALGQAARMQKERETLSLDTDRIRE 826
Cdd:pfam07888 169 EEAERKQLQAKLQQTEEELRSLSKEFQEL----RNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAENEALLEELRSLQE 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 827 KLEKTQ-------VQLGRIQKERDQFSDELEtlKERSESAQTLLMKA-------------ARDREAMQTDLEVLKERYEK 886
Cdd:pfam07888 245 RLNASErkveglgEELSSMAAQRDRTQAELH--QARLQAAQLTLQLAdaslalregrarwAQERETLQQSAEADKDRIEK 322
|
330 340
....*....|....*....|....*.
gi 2329048320 887 SHAIQQKLQMERDDAVTEVEILKEKL 912
Cdd:pfam07888 323 LSAELQRLEERLQEERMEREKLEVEL 348
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
630-1073 |
7.12e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.29 E-value: 7.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 630 QELDRAQERADKASAELRRTQAELRVTQGETEK--RFSDAERAREEAAALQEKLEKSQGEVYRLKAKLEnaqgEQESLRQ 707
Cdd:COG4717 88 EEYAELQEELEELEEELEELEAELEELREELEKleKLLQLLPLYQELEALEAELAELPERLEELEERLE----ELRELEE 163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 708 ELEKAQSGVSRIHADRDRAFSEV-EKIKEEMERTQATLGKSQLQHEKLQNSLDKAQNEVDHLQDKLDKactenrrlvLEK 786
Cdd:COG4717 164 ELEELEAELAELQEELEELLEQLsLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQ---------LEN 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 787 EKLTYDYDNLQSQLDKALGQAARMQKERETLSLDTDRIREKLEKTQVQLGRIQKERDQFSDELETLKERSESAQTLLMKA 866
Cdd:COG4717 235 ELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALE 314
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 867 ARDREAMQTDLEV--LKERYEKSHAIQQKLQMER-DDAVTEVEILKEKLDKALYASQK---LIDEKDTSNKEFEKMLEKY 940
Cdd:COG4717 315 ELEEEELEELLAAlgLPPDLSPEELLELLDRIEElQELLREAEELEEELQLEELEQEIaalLAEAGVEDEEELRAALEQA 394
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 941 DRAQNEiyrlqsrcdTAEADRARLEVEAERSGLAASKAREDLRKLQDESTRLQEACDRAALQLSRAKECEDNARSELEHS 1020
Cdd:COG4717 395 EEYQEL---------KEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQL 465
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 2329048320 1021 RDrfdklQTDIRRAQGEKEHFQSELErvtyELERAHAAQTKASASVEAAKEEA 1073
Cdd:COG4717 466 EE-----DGELAELLQELEELKAELR----ELAEEWAALKLALELLEEAREEY 509
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
794-1008 |
7.63e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.90 E-value: 7.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 794 DNLQSQLDKALGQAARMQKERETLSLDTDRIREKLEKTQVQLGRIQKERDQFSDELETLKERsesaqtlLMKAARDREAM 873
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAE-------LAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 874 QTDLEVLKERYEKSHAIQQKL-----------QMERDDAVTEVEILK---EKLDKALYASQKLIDEKDTSNKEFEKMLEK 939
Cdd:COG4942 96 RAELEAQKEELAELLRALYRLgrqpplalllsPEDFLDAVRRLQYLKylaPARREQAEELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2329048320 940 YDRAQNEIYRLQSRCDTAEADRARLEVEAERSglaASKAREDLRKLQDESTRLQEACDRAALQLSRAKE 1008
Cdd:COG4942 176 LEALLAELEEERAALEALKAERQKLLARLEKE---LAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
972-1202 |
8.25e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.52 E-value: 8.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 972 GLAASKAREDLRKLQDESTRLQEACDRAALQLSRAKECEDNARSELEHSRDRFDKLQTDIRRAqgekehfQSELERVTYE 1051
Cdd:COG4942 12 ALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRAL-------EQELAALEAE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 1052 LERAHAAQTKASASVEAAKEEAAHYAVELEKM-RDRYEKSQVELRKLQDTDTFGRETRRLKEENERLREKLDKTLMELET 1130
Cdd:COG4942 85 LAELEKEIAELRAELEAQKEELAELLRALYRLgRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAA 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2329048320 1131 IRGKSQYESESFEKYKDKYEKIEMEVQNMESKLHETSLQLELSKGEVAKMLANQEKQRSELER--AHIEREKAR 1202
Cdd:COG4942 165 LRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEAliARLEAEAAA 238
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
386-540 |
8.39e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 41.00 E-value: 8.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 386 DVEEMRARLeeknrlIEKKTQGTLQTVQERNRLTSELTELKDHMDIKDRKISVLQRKIENLEDLLKEkdnqvdmararls 465
Cdd:COG2433 364 DRDEVKARV------IRGLSIEEALEELIEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVER------------- 424
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2329048320 466 aMQAHHSSSEGALTSLEEAIGDKEKQMAQLRDQRdRAEHEKQEERDLHEREVADYKIKLRAAESEVEKLQTRLER 540
Cdd:COG2433 425 -LEAEVEELEAELEEKDERIERLERELSEARSEE-RREIRKDREISRLDREIERLERELEEERERIEELKRKLER 497
|
|
| Borrelia_P83 |
pfam05262 |
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins. |
582-765 |
9.11e-03 |
|
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins.
Pssm-ID: 114011 [Multi-domain] Cd Length: 489 Bit Score: 40.76 E-value: 9.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 582 STKQRIARLELENERlkhDLERSQVLMQLEEQTTlhkTTFGRTTMTTSQELDRAQERADKASAELRRTQAELRVTQGETE 661
Cdd:pfam05262 178 SDKKVVEALREDNEK---GVNFRRDMTDLKERES---QEDAKRAQQLKEELDKKQIDADKAQQKADFAQDNADKQRDEVR 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2329048320 662 KRFSDAERAREEAAALQEKLEKSQGEvyRLKAKLENAQGEQESLRQELEKAQSgvsrihadrDRAFSEVEKIKEEMERTQ 741
Cdd:pfam05262 252 QKQQEAKNLPKPADTSSPKEDKQVAE--NQKREIEKAQIEIKKNDEEALKAKD---------HKAFDLKQESKASEKEAE 320
|
170 180
....*....|....*....|....
gi 2329048320 742 ATLGKSQLQHEKLQNSLDKAQNEV 765
Cdd:pfam05262 321 DKELEAQKKREPVAEDLQKTKPQV 344
|
|
| |
