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Conserved domains on  [gi|2208424306|ref|NP_001389418|]
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NALCN channel auxiliary factor 1 isoform 2 [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Mid1 super family cl15172
Stretch-activated Ca2+-permeable channel component; MID1 is a yeast Saccharomyces cerevisiae ...
278-323 2.61e-03

Stretch-activated Ca2+-permeable channel component; MID1 is a yeast Saccharomyces cerevisiae gene encoding a plasma membrane protein required for Ca2+ influx induced by the mating pheromone, alpha-factor. Mid1 protein plays a crucial role in supplying Ca2+ during the mating process. Mid1 is composed of 548-amino-acid residues with four hydrophobic regions named H1, H2, H3 and H4, and two cysteine-rich regions (C1 and C2) at the C-terminal. This family contains the H3, H4, C1 and C2 regions. suggesting that H1 is a signal sequence responsible for the alpha-factor-induced Mid1 delivery to the plasma membrane. The region from H1 to H3 is required for the localization of Mid1 in the plasma and ER membranes. Trafficking of Mid1-GFP to the plasma membrane is dependent on the N-glycosylation of Mid1 and the transporter protein Sec12. This findings suggests that the trafficking of Mid1-GFP to the plasma membrane requires a Sec12-dependent pathway from the ER to the Golgi, and that Mid1 is recruited via a Sec6- and Sec7-independent pathway from the Golgi to the plasma membrane.


The actual alignment was detected with superfamily member pfam12929:

Pssm-ID: 432882  Cd Length: 429  Bit Score: 39.53  E-value: 2.61e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2208424306 278 QDYDHHAQEKYEEFEsvlhKYLQ-------SD-EYS-VKSCpEDCKIVYKAWLCS 323
Cdd:pfam12929 276 KFYDDYARSLYANFS----KALQqipcdteSDaRYSlARTC-DDCARAYKNWLCA 325
 
Name Accession Description Interval E-value
Mid1 pfam12929
Stretch-activated Ca2+-permeable channel component; MID1 is a yeast Saccharomyces cerevisiae ...
278-323 2.61e-03

Stretch-activated Ca2+-permeable channel component; MID1 is a yeast Saccharomyces cerevisiae gene encoding a plasma membrane protein required for Ca2+ influx induced by the mating pheromone, alpha-factor. Mid1 protein plays a crucial role in supplying Ca2+ during the mating process. Mid1 is composed of 548-amino-acid residues with four hydrophobic regions named H1, H2, H3 and H4, and two cysteine-rich regions (C1 and C2) at the C-terminal. This family contains the H3, H4, C1 and C2 regions. suggesting that H1 is a signal sequence responsible for the alpha-factor-induced Mid1 delivery to the plasma membrane. The region from H1 to H3 is required for the localization of Mid1 in the plasma and ER membranes. Trafficking of Mid1-GFP to the plasma membrane is dependent on the N-glycosylation of Mid1 and the transporter protein Sec12. This findings suggests that the trafficking of Mid1-GFP to the plasma membrane requires a Sec12-dependent pathway from the ER to the Golgi, and that Mid1 is recruited via a Sec6- and Sec7-independent pathway from the Golgi to the plasma membrane.


Pssm-ID: 432882  Cd Length: 429  Bit Score: 39.53  E-value: 2.61e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2208424306 278 QDYDHHAQEKYEEFEsvlhKYLQ-------SD-EYS-VKSCpEDCKIVYKAWLCS 323
Cdd:pfam12929 276 KFYDDYARSLYANFS----KALQqipcdteSDaRYSlARTC-DDCARAYKNWLCA 325
 
Name Accession Description Interval E-value
Mid1 pfam12929
Stretch-activated Ca2+-permeable channel component; MID1 is a yeast Saccharomyces cerevisiae ...
278-323 2.61e-03

Stretch-activated Ca2+-permeable channel component; MID1 is a yeast Saccharomyces cerevisiae gene encoding a plasma membrane protein required for Ca2+ influx induced by the mating pheromone, alpha-factor. Mid1 protein plays a crucial role in supplying Ca2+ during the mating process. Mid1 is composed of 548-amino-acid residues with four hydrophobic regions named H1, H2, H3 and H4, and two cysteine-rich regions (C1 and C2) at the C-terminal. This family contains the H3, H4, C1 and C2 regions. suggesting that H1 is a signal sequence responsible for the alpha-factor-induced Mid1 delivery to the plasma membrane. The region from H1 to H3 is required for the localization of Mid1 in the plasma and ER membranes. Trafficking of Mid1-GFP to the plasma membrane is dependent on the N-glycosylation of Mid1 and the transporter protein Sec12. This findings suggests that the trafficking of Mid1-GFP to the plasma membrane requires a Sec12-dependent pathway from the ER to the Golgi, and that Mid1 is recruited via a Sec6- and Sec7-independent pathway from the Golgi to the plasma membrane.


Pssm-ID: 432882  Cd Length: 429  Bit Score: 39.53  E-value: 2.61e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2208424306 278 QDYDHHAQEKYEEFEsvlhKYLQ-------SD-EYS-VKSCpEDCKIVYKAWLCS 323
Cdd:pfam12929 276 KFYDDYARSLYANFS----KALQqipcdteSDaRYSlARTC-DDCARAYKNWLCA 325
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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