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Conserved domains on  [gi|2173203326|ref|NP_001386165|]
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photoreceptor cilium actin regulator [Rattus norvegicus]

Protein Classification

Retinal domain-containing protein( domain architecture ID 12173672)

Retinal domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Retinal pfam15449
Retinal protein; This family of proteins is found in the photoreceptor cells of the retina. ...
 1-1246 0e+00

Retinal protein; This family of proteins is found in the photoreceptor cells of the retina. Mutations of the gene encoding this protein have been associated with retinal disorders such as retinitis pigmentosa and late-onset progressive retinal atrophy. The function of this family of proteins is unknown, but it is likely to be important in the development and function of the retina.


:

Pssm-ID: 464722 [Multi-domain]  Cd Length: 1293  Bit Score: 1865.60  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173203326    1 MGCTPSHNVIVNSVAKSGIQFFKRPKAILPGCQWGSQKCPIPLLIQSSTFCDPGGELHPGARLAEETASSRKLPDMTEGL 80
Cdd:pfam15449    1 MGCTPSHSDIVNSVAKSGIQFLKKPKAILPGCQGGSERGSIPLLVKSSTCYDSGEGLSQGQRPAEEQPSSRWNQTMAEGL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173203326   81 CQL----------------PESQT--FHMNKSQSRMATDISFRTEGSHRTQEVEFSGKEGKENTPRETSERGREPKCHPS 142
Cdd:pfam15449   81 CQLtgdptsgkrkdmegliPETKTspSQLNKSQSHMAKDIPFKTQSSHRSQGAAFSGEESEESNTQETSKWGRKPKCHRS 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173203326  143 DSQDHCCQTV---PEPKGKVDFPESLVKAHQHAYAYLHTSLSRYEAIVHLVQQASQTWELLQSMLSFLLLGFEEASQLLG 219
Cdd:pfam15449  161 GKQGHCCQTIlpaHESEGKVDFPEPLVKAHQHAYAYLHSSLSKYEAILHIAHQATQTQELLQPMVSFLLLCFDEVNQLLG 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173203326  220 EISKDGEVLLREVRGDLAWPVRKGEPWEHPDLLQQLLQYTVNKLQVVHSTVAALTGSFLEGSSSYLRATAGHLEGKLSTK 299
Cdd:pfam15449  241 EISKDGEVLLQEVREDLAWPLKKGEPQEQPDLLQQLLQYTVSKLQVLHGTVASLTSSFLEGSSSYLHSTASHLENKLSTK 320

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173203326  300 RGIDECLLRALGQLESLTSGSSDPGLLGPPLCSEDSGIGADNESVHSVEKLGKQASWDFAAELGEWKPGTAAQGEARPSG 379
Cdd:pfam15449  321 RGVDERLLRALGQLESLASGHGDPGVQDLPLCSEDSGIGADNESVHSVDKLGKQASWDLVPEPAEWKPGISPQVEARLSG 400

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173203326  380 HAWQKGPYWTGPDRPQDCPLSGPRIAKVQPAVQDEARSSNTSSTSPEAVTSRPPEAAKSIPWDSLGTEIPVQTQLSRrSS 459
Cdd:pfam15449  401 HAWQQGPFWMGSDRPQDCPLSRPPTAKVQPAAQGEAGSPCPSSTGPENTTSRPLELGKSSPCDSLGTGIPVEAHLSK-GS 479

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173203326  460 GLMGSPYLS-GDEDSSPEEEDELGSTDLHPEPQKALPSRPQSSPDPRESLFQPYSTKLRSPQAQEMILKMKEAISERIKF 538
Cdd:pfam15449  480 RLMDTPSLSeDEDSSPEEEEDEVSSTSLCTWQEKALPSRPQSSPAGTESPFQPHPRRLRSPQAQEMILKMKEAISERIKF 559

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173203326  539 VPVPSRPQDWAEEEEGRSVVPPRPRSVSGCRRAPERQRRSQSEGCLKSHVEDPTLQELRRVQTDLSKRLEVFYALGATQQ 618
Cdd:pfam15449  560 VPVPSGHQDWAEEEEGRTVVPPRPSTVSGSRRAPERQRRSQSEECLKSHVEDPTLQELRRVQRDLSQRLEAFYALGAKRQ 639

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173203326  619 GQSREQCLPPRTSLLWPPTNCRVSPSSAISKFKASLTQNFSILPNQDKSIFQRGSPCFDSDQPCQGKAEKLPSAIFCGKK 698
Cdd:pfam15449  640 GQSKEQVLQPRAAALWPDSNCRVSPSSTISKLKASLTKNFSILPSQDKSILQKCSPHPEGEQPWQGKAEKLPNAIPSGEK 719

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173203326  699 NSRAPGDNERDIRACPTRTSVKKLIETFSPTESPRMPRDCRNLGTSPCLRKWGVPAMPPRFPIYRGLAPLYPKPQISPAV 778
Cdd:pfam15449  720 ASEAPGAQDWSGRGCPTRTSVKKLIETFSPTESLRTLGDSRDSGPSPCLRKWGVPIMPPRFPIYRGLAPLYPKPQISPAA 799

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173203326  779 GRDPLKLGMSWRPSAP-FPSLPPAEASEGEDIGGEMEEDLQNLPPPPLEILMDKSFTALEHPEC------SLEETLLPEL 851
Cdd:pfam15449  800 GRESLKVGPGWRPLAPiFPPLPTAEASKSEDTNCETEEDLEHLPPPPLEILMDKSFTSLEPPESskpagsSPEGTPVPGL 879

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173203326  852 QEARRPKRTWASPKLKASMSPMDLLPSKGNGSSPRLQGTRPGSTSNVGNSRKLTLDLNSQQTANPSPEAEGGAQIQAPPE 931
Cdd:pfam15449  880 GEAGPTRRTWASPKLRASMSPIDLLPSKSTASPTRPRSTGPGSSKSGCNPRKLALDLNHPPAASHNPEAEGGAQSQAQAE 959

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173203326  932 NTAGLSKHHQKAIPRHHANPTSGQSRALEPSLARFSRDPHSPEASRKGPERSPPGVRKASPPRAQWASQGGRRLQSLPST 1011
Cdd:pfam15449  960 EAASLSKQPRKAIPWHHSSHTSGQSRTSEPSLARPTRGPHSPEAPRQSQERSPPLVRKASPTRAHWAPRADKRHPSLPSS 1039

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173203326 1012 HGPSQPGLRAV---------LSSPSPPLSPRTLSPPATRKPTSPPCQYPQSNPAP---------GSPPVQRTETNTPSSA 1073
Cdd:pfam15449 1040 HRPAQPSLPTVqrspspplsPRAPSPPRSPRVLSPPTSKKRTSPPPQHKLPSPPPesppaqhklSSPPTQRTEASSPSSG 1119

                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173203326 1074 SSSSPSVSPSRGSKDSSHSEDSEGTTNKASRGTCSVLFPATA-FCEAKSSFSTSHPQTLPEPGGLLRTPAGGWRGSAGPR 1152
Cdd:pfam15449 1120 PSPSPPTSPSQGHKETRDSEDSQAATAKASGNTCSIFCPATSsLFEAKSPFSTAHPLLPPEAGGPLETPAGCWRSSSGPR 1199

                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173203326 1153 LRADSQKRTVLNALDALPFVRRTASDrqRQQGDPLQLPSSDWESHPCQNSSSSSEE---NAKQELPPWNNSRVPELQSSS 1229
Cdd:pfam15449 1200 LRADSQRRTALCALNPQPFVRRTASD--RRPGVRLQLPASGATGTASESQLSQSSSseeSPKKDTEPWSSPCAPELKGSS 1277

                         1290
                   ....*....|....*..
gi 2173203326 1230 tKWTSPLELCVLGHGLQ 1246
Cdd:pfam15449 1278 -RWASPPELCVLGHGLQ 1293
 
Name Accession Description Interval E-value
Retinal pfam15449
Retinal protein; This family of proteins is found in the photoreceptor cells of the retina. ...
 1-1246 0e+00

Retinal protein; This family of proteins is found in the photoreceptor cells of the retina. Mutations of the gene encoding this protein have been associated with retinal disorders such as retinitis pigmentosa and late-onset progressive retinal atrophy. The function of this family of proteins is unknown, but it is likely to be important in the development and function of the retina.


Pssm-ID: 464722 [Multi-domain]  Cd Length: 1293  Bit Score: 1865.60  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173203326    1 MGCTPSHNVIVNSVAKSGIQFFKRPKAILPGCQWGSQKCPIPLLIQSSTFCDPGGELHPGARLAEETASSRKLPDMTEGL 80
Cdd:pfam15449    1 MGCTPSHSDIVNSVAKSGIQFLKKPKAILPGCQGGSERGSIPLLVKSSTCYDSGEGLSQGQRPAEEQPSSRWNQTMAEGL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173203326   81 CQL----------------PESQT--FHMNKSQSRMATDISFRTEGSHRTQEVEFSGKEGKENTPRETSERGREPKCHPS 142
Cdd:pfam15449   81 CQLtgdptsgkrkdmegliPETKTspSQLNKSQSHMAKDIPFKTQSSHRSQGAAFSGEESEESNTQETSKWGRKPKCHRS 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173203326  143 DSQDHCCQTV---PEPKGKVDFPESLVKAHQHAYAYLHTSLSRYEAIVHLVQQASQTWELLQSMLSFLLLGFEEASQLLG 219
Cdd:pfam15449  161 GKQGHCCQTIlpaHESEGKVDFPEPLVKAHQHAYAYLHSSLSKYEAILHIAHQATQTQELLQPMVSFLLLCFDEVNQLLG 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173203326  220 EISKDGEVLLREVRGDLAWPVRKGEPWEHPDLLQQLLQYTVNKLQVVHSTVAALTGSFLEGSSSYLRATAGHLEGKLSTK 299
Cdd:pfam15449  241 EISKDGEVLLQEVREDLAWPLKKGEPQEQPDLLQQLLQYTVSKLQVLHGTVASLTSSFLEGSSSYLHSTASHLENKLSTK 320

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173203326  300 RGIDECLLRALGQLESLTSGSSDPGLLGPPLCSEDSGIGADNESVHSVEKLGKQASWDFAAELGEWKPGTAAQGEARPSG 379
Cdd:pfam15449  321 RGVDERLLRALGQLESLASGHGDPGVQDLPLCSEDSGIGADNESVHSVDKLGKQASWDLVPEPAEWKPGISPQVEARLSG 400

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173203326  380 HAWQKGPYWTGPDRPQDCPLSGPRIAKVQPAVQDEARSSNTSSTSPEAVTSRPPEAAKSIPWDSLGTEIPVQTQLSRrSS 459
Cdd:pfam15449  401 HAWQQGPFWMGSDRPQDCPLSRPPTAKVQPAAQGEAGSPCPSSTGPENTTSRPLELGKSSPCDSLGTGIPVEAHLSK-GS 479

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173203326  460 GLMGSPYLS-GDEDSSPEEEDELGSTDLHPEPQKALPSRPQSSPDPRESLFQPYSTKLRSPQAQEMILKMKEAISERIKF 538
Cdd:pfam15449  480 RLMDTPSLSeDEDSSPEEEEDEVSSTSLCTWQEKALPSRPQSSPAGTESPFQPHPRRLRSPQAQEMILKMKEAISERIKF 559

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173203326  539 VPVPSRPQDWAEEEEGRSVVPPRPRSVSGCRRAPERQRRSQSEGCLKSHVEDPTLQELRRVQTDLSKRLEVFYALGATQQ 618
Cdd:pfam15449  560 VPVPSGHQDWAEEEEGRTVVPPRPSTVSGSRRAPERQRRSQSEECLKSHVEDPTLQELRRVQRDLSQRLEAFYALGAKRQ 639

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173203326  619 GQSREQCLPPRTSLLWPPTNCRVSPSSAISKFKASLTQNFSILPNQDKSIFQRGSPCFDSDQPCQGKAEKLPSAIFCGKK 698
Cdd:pfam15449  640 GQSKEQVLQPRAAALWPDSNCRVSPSSTISKLKASLTKNFSILPSQDKSILQKCSPHPEGEQPWQGKAEKLPNAIPSGEK 719

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173203326  699 NSRAPGDNERDIRACPTRTSVKKLIETFSPTESPRMPRDCRNLGTSPCLRKWGVPAMPPRFPIYRGLAPLYPKPQISPAV 778
Cdd:pfam15449  720 ASEAPGAQDWSGRGCPTRTSVKKLIETFSPTESLRTLGDSRDSGPSPCLRKWGVPIMPPRFPIYRGLAPLYPKPQISPAA 799

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173203326  779 GRDPLKLGMSWRPSAP-FPSLPPAEASEGEDIGGEMEEDLQNLPPPPLEILMDKSFTALEHPEC------SLEETLLPEL 851
Cdd:pfam15449  800 GRESLKVGPGWRPLAPiFPPLPTAEASKSEDTNCETEEDLEHLPPPPLEILMDKSFTSLEPPESskpagsSPEGTPVPGL 879

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173203326  852 QEARRPKRTWASPKLKASMSPMDLLPSKGNGSSPRLQGTRPGSTSNVGNSRKLTLDLNSQQTANPSPEAEGGAQIQAPPE 931
Cdd:pfam15449  880 GEAGPTRRTWASPKLRASMSPIDLLPSKSTASPTRPRSTGPGSSKSGCNPRKLALDLNHPPAASHNPEAEGGAQSQAQAE 959

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173203326  932 NTAGLSKHHQKAIPRHHANPTSGQSRALEPSLARFSRDPHSPEASRKGPERSPPGVRKASPPRAQWASQGGRRLQSLPST 1011
Cdd:pfam15449  960 EAASLSKQPRKAIPWHHSSHTSGQSRTSEPSLARPTRGPHSPEAPRQSQERSPPLVRKASPTRAHWAPRADKRHPSLPSS 1039

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173203326 1012 HGPSQPGLRAV---------LSSPSPPLSPRTLSPPATRKPTSPPCQYPQSNPAP---------GSPPVQRTETNTPSSA 1073
Cdd:pfam15449 1040 HRPAQPSLPTVqrspspplsPRAPSPPRSPRVLSPPTSKKRTSPPPQHKLPSPPPesppaqhklSSPPTQRTEASSPSSG 1119

                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173203326 1074 SSSSPSVSPSRGSKDSSHSEDSEGTTNKASRGTCSVLFPATA-FCEAKSSFSTSHPQTLPEPGGLLRTPAGGWRGSAGPR 1152
Cdd:pfam15449 1120 PSPSPPTSPSQGHKETRDSEDSQAATAKASGNTCSIFCPATSsLFEAKSPFSTAHPLLPPEAGGPLETPAGCWRSSSGPR 1199

                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173203326 1153 LRADSQKRTVLNALDALPFVRRTASDrqRQQGDPLQLPSSDWESHPCQNSSSSSEE---NAKQELPPWNNSRVPELQSSS 1229
Cdd:pfam15449 1200 LRADSQRRTALCALNPQPFVRRTASD--RRPGVRLQLPASGATGTASESQLSQSSSseeSPKKDTEPWSSPCAPELKGSS 1277

                         1290
                   ....*....|....*..
gi 2173203326 1230 tKWTSPLELCVLGHGLQ 1246
Cdd:pfam15449 1278 -RWASPPELCVLGHGLQ 1293
PHA03247 PHA03247
large tegument protein UL36; Provisional
 757-1216 9.99e-07

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 53.79  E-value: 9.99e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173203326  757 PRFPIYRGLA----PLYPKPQISPAVGRDPlKLGMSWRPSAPFPSLPPaEASEGEDIGGEM-------EE---DLQNLPP 822
Cdd:PHA03247  2475 PGAPVYRRPAearfPFAAGAAPDPGGGGPP-DPDAPPAPSRLAPAILP-DEPVGEPVHPRMltwirglEElasDDAGDPP 2552

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173203326  823 PPLEILMDKSFT--ALEHPECSLEETLLPELQEARRPKRTWASPKLKASMSPMDLLPSKGNGSSPRLQGTRPGSTSNVGN 900
Cdd:PHA03247  2553 PPLPPAAPPAAPdrSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPS 2632

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173203326  901 SRKLTLdlnSQQTANPSPEAEGGAQIQAPPENTAGLSKHHQKAIPRHHANPTSGQSRALEPSLARFSR--DPHSPEasrK 978
Cdd:PHA03247  2633 PAANEP---DPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSlaDPPPPP---P 2706

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173203326  979 GPERSPPGVRKASPPRAQWASQGgrrlQSLPSThgPSQPGLRAVLSSPSPPLSPRTLSPPATrkPTSPPCQYPQSNPAPG 1058
Cdd:PHA03247  2707 TPEPAPHALVSATPLPPGPAAAR----QASPAL--PAAPAPPAVPAGPATPGGPARPARPPT--TAGPPAPAPPAAPAAG 2778

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173203326 1059 SPPvqRTETNTPSSASSSSPSVSPSRGSKDSSHSEDSEGTTNKASRGTCSVLFPATAFCEAKSSFSTSHPQTlpepggll 1138
Cdd:PHA03247  2779 PPR--RLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPP-------- 2848

                          410       420       430       440       450       460       470
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2173203326 1139 RTPAGGWRGSAGP-RLRADSQKRTVLNALDALPFVRRTASDRQRQQGDPLQLPSSDWESHPCQNSSSSSEENAKQELPP 1216
Cdd:PHA03247  2849 SLPLGGSVAPGGDvRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPP 2927
 
Name Accession Description Interval E-value
Retinal pfam15449
Retinal protein; This family of proteins is found in the photoreceptor cells of the retina. ...
 1-1246 0e+00

Retinal protein; This family of proteins is found in the photoreceptor cells of the retina. Mutations of the gene encoding this protein have been associated with retinal disorders such as retinitis pigmentosa and late-onset progressive retinal atrophy. The function of this family of proteins is unknown, but it is likely to be important in the development and function of the retina.


Pssm-ID: 464722 [Multi-domain]  Cd Length: 1293  Bit Score: 1865.60  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173203326    1 MGCTPSHNVIVNSVAKSGIQFFKRPKAILPGCQWGSQKCPIPLLIQSSTFCDPGGELHPGARLAEETASSRKLPDMTEGL 80
Cdd:pfam15449    1 MGCTPSHSDIVNSVAKSGIQFLKKPKAILPGCQGGSERGSIPLLVKSSTCYDSGEGLSQGQRPAEEQPSSRWNQTMAEGL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173203326   81 CQL----------------PESQT--FHMNKSQSRMATDISFRTEGSHRTQEVEFSGKEGKENTPRETSERGREPKCHPS 142
Cdd:pfam15449   81 CQLtgdptsgkrkdmegliPETKTspSQLNKSQSHMAKDIPFKTQSSHRSQGAAFSGEESEESNTQETSKWGRKPKCHRS 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173203326  143 DSQDHCCQTV---PEPKGKVDFPESLVKAHQHAYAYLHTSLSRYEAIVHLVQQASQTWELLQSMLSFLLLGFEEASQLLG 219
Cdd:pfam15449  161 GKQGHCCQTIlpaHESEGKVDFPEPLVKAHQHAYAYLHSSLSKYEAILHIAHQATQTQELLQPMVSFLLLCFDEVNQLLG 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173203326  220 EISKDGEVLLREVRGDLAWPVRKGEPWEHPDLLQQLLQYTVNKLQVVHSTVAALTGSFLEGSSSYLRATAGHLEGKLSTK 299
Cdd:pfam15449  241 EISKDGEVLLQEVREDLAWPLKKGEPQEQPDLLQQLLQYTVSKLQVLHGTVASLTSSFLEGSSSYLHSTASHLENKLSTK 320

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173203326  300 RGIDECLLRALGQLESLTSGSSDPGLLGPPLCSEDSGIGADNESVHSVEKLGKQASWDFAAELGEWKPGTAAQGEARPSG 379
Cdd:pfam15449  321 RGVDERLLRALGQLESLASGHGDPGVQDLPLCSEDSGIGADNESVHSVDKLGKQASWDLVPEPAEWKPGISPQVEARLSG 400

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173203326  380 HAWQKGPYWTGPDRPQDCPLSGPRIAKVQPAVQDEARSSNTSSTSPEAVTSRPPEAAKSIPWDSLGTEIPVQTQLSRrSS 459
Cdd:pfam15449  401 HAWQQGPFWMGSDRPQDCPLSRPPTAKVQPAAQGEAGSPCPSSTGPENTTSRPLELGKSSPCDSLGTGIPVEAHLSK-GS 479

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173203326  460 GLMGSPYLS-GDEDSSPEEEDELGSTDLHPEPQKALPSRPQSSPDPRESLFQPYSTKLRSPQAQEMILKMKEAISERIKF 538
Cdd:pfam15449  480 RLMDTPSLSeDEDSSPEEEEDEVSSTSLCTWQEKALPSRPQSSPAGTESPFQPHPRRLRSPQAQEMILKMKEAISERIKF 559

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173203326  539 VPVPSRPQDWAEEEEGRSVVPPRPRSVSGCRRAPERQRRSQSEGCLKSHVEDPTLQELRRVQTDLSKRLEVFYALGATQQ 618
Cdd:pfam15449  560 VPVPSGHQDWAEEEEGRTVVPPRPSTVSGSRRAPERQRRSQSEECLKSHVEDPTLQELRRVQRDLSQRLEAFYALGAKRQ 639

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173203326  619 GQSREQCLPPRTSLLWPPTNCRVSPSSAISKFKASLTQNFSILPNQDKSIFQRGSPCFDSDQPCQGKAEKLPSAIFCGKK 698
Cdd:pfam15449  640 GQSKEQVLQPRAAALWPDSNCRVSPSSTISKLKASLTKNFSILPSQDKSILQKCSPHPEGEQPWQGKAEKLPNAIPSGEK 719

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173203326  699 NSRAPGDNERDIRACPTRTSVKKLIETFSPTESPRMPRDCRNLGTSPCLRKWGVPAMPPRFPIYRGLAPLYPKPQISPAV 778
Cdd:pfam15449  720 ASEAPGAQDWSGRGCPTRTSVKKLIETFSPTESLRTLGDSRDSGPSPCLRKWGVPIMPPRFPIYRGLAPLYPKPQISPAA 799

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173203326  779 GRDPLKLGMSWRPSAP-FPSLPPAEASEGEDIGGEMEEDLQNLPPPPLEILMDKSFTALEHPEC------SLEETLLPEL 851
Cdd:pfam15449  800 GRESLKVGPGWRPLAPiFPPLPTAEASKSEDTNCETEEDLEHLPPPPLEILMDKSFTSLEPPESskpagsSPEGTPVPGL 879

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173203326  852 QEARRPKRTWASPKLKASMSPMDLLPSKGNGSSPRLQGTRPGSTSNVGNSRKLTLDLNSQQTANPSPEAEGGAQIQAPPE 931
Cdd:pfam15449  880 GEAGPTRRTWASPKLRASMSPIDLLPSKSTASPTRPRSTGPGSSKSGCNPRKLALDLNHPPAASHNPEAEGGAQSQAQAE 959

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173203326  932 NTAGLSKHHQKAIPRHHANPTSGQSRALEPSLARFSRDPHSPEASRKGPERSPPGVRKASPPRAQWASQGGRRLQSLPST 1011
Cdd:pfam15449  960 EAASLSKQPRKAIPWHHSSHTSGQSRTSEPSLARPTRGPHSPEAPRQSQERSPPLVRKASPTRAHWAPRADKRHPSLPSS 1039

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173203326 1012 HGPSQPGLRAV---------LSSPSPPLSPRTLSPPATRKPTSPPCQYPQSNPAP---------GSPPVQRTETNTPSSA 1073
Cdd:pfam15449 1040 HRPAQPSLPTVqrspspplsPRAPSPPRSPRVLSPPTSKKRTSPPPQHKLPSPPPesppaqhklSSPPTQRTEASSPSSG 1119

                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173203326 1074 SSSSPSVSPSRGSKDSSHSEDSEGTTNKASRGTCSVLFPATA-FCEAKSSFSTSHPQTLPEPGGLLRTPAGGWRGSAGPR 1152
Cdd:pfam15449 1120 PSPSPPTSPSQGHKETRDSEDSQAATAKASGNTCSIFCPATSsLFEAKSPFSTAHPLLPPEAGGPLETPAGCWRSSSGPR 1199

                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173203326 1153 LRADSQKRTVLNALDALPFVRRTASDrqRQQGDPLQLPSSDWESHPCQNSSSSSEE---NAKQELPPWNNSRVPELQSSS 1229
Cdd:pfam15449 1200 LRADSQRRTALCALNPQPFVRRTASD--RRPGVRLQLPASGATGTASESQLSQSSSseeSPKKDTEPWSSPCAPELKGSS 1277

                         1290
                   ....*....|....*..
gi 2173203326 1230 tKWTSPLELCVLGHGLQ 1246
Cdd:pfam15449 1278 -RWASPPELCVLGHGLQ 1293
PHA03247 PHA03247
large tegument protein UL36; Provisional
 757-1216 9.99e-07

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 53.79  E-value: 9.99e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173203326  757 PRFPIYRGLA----PLYPKPQISPAVGRDPlKLGMSWRPSAPFPSLPPaEASEGEDIGGEM-------EE---DLQNLPP 822
Cdd:PHA03247  2475 PGAPVYRRPAearfPFAAGAAPDPGGGGPP-DPDAPPAPSRLAPAILP-DEPVGEPVHPRMltwirglEElasDDAGDPP 2552

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173203326  823 PPLEILMDKSFT--ALEHPECSLEETLLPELQEARRPKRTWASPKLKASMSPMDLLPSKGNGSSPRLQGTRPGSTSNVGN 900
Cdd:PHA03247  2553 PPLPPAAPPAAPdrSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPS 2632

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173203326  901 SRKLTLdlnSQQTANPSPEAEGGAQIQAPPENTAGLSKHHQKAIPRHHANPTSGQSRALEPSLARFSR--DPHSPEasrK 978
Cdd:PHA03247  2633 PAANEP---DPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSlaDPPPPP---P 2706

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173203326  979 GPERSPPGVRKASPPRAQWASQGgrrlQSLPSThgPSQPGLRAVLSSPSPPLSPRTLSPPATrkPTSPPCQYPQSNPAPG 1058
Cdd:PHA03247  2707 TPEPAPHALVSATPLPPGPAAAR----QASPAL--PAAPAPPAVPAGPATPGGPARPARPPT--TAGPPAPAPPAAPAAG 2778

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173203326 1059 SPPvqRTETNTPSSASSSSPSVSPSRGSKDSSHSEDSEGTTNKASRGTCSVLFPATAFCEAKSSFSTSHPQTlpepggll 1138
Cdd:PHA03247  2779 PPR--RLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPP-------- 2848

                          410       420       430       440       450       460       470
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2173203326 1139 RTPAGGWRGSAGP-RLRADSQKRTVLNALDALPFVRRTASDRQRQQGDPLQLPSSDWESHPCQNSSSSSEENAKQELPP 1216
Cdd:PHA03247  2849 SLPLGGSVAPGGDvRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPP 2927
PHA03247 PHA03247
large tegument protein UL36; Provisional
 753-1067 3.53e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 51.86  E-value: 3.53e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173203326  753 PAMPPRFPiYRGLAPLYPKPQ-ISPAVGRDPLKLGMSWRPSAPFPSLPPAEASEGEDIGGEMEEDLQNLPPPPleilMDK 831
Cdd:PHA03247  2557 PAAPPAAP-DRSVPPPRPAPRpSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPP----PSP 2631

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173203326  832 SFTALEHPECSLEETLLPElqearRPKRTWASPKLKASMSPMDLLPSKGNGSSPRlQGTRPGSTSNVGNSRKLTLDLNSQ 911
Cdd:PHA03247  2632 SPAANEPDPHPPPTVPPPE-----RPRDDPAPGRVSRPRRARRLGRAAQASSPPQ-RPRRRAARPTVGSLTSLADPPPPP 2705

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173203326  912 QTANPSPEAEGGAQIQAPPENTAGLSKHHQKAIPRHHANPTSgqsralePSLARFSRDPHSPEASRKGPERSPPGVRKAS 991
Cdd:PHA03247  2706 PTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAG-------PATPGGPARPARPPTTAGPPAPAPPAAPAAG 2778

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2173203326  992 PPRAQWASQGGRRLQSLPSTHGPSQPGLRAVLSSPSPPLSPRTLSPPAtrkPTSPPCQYPQSNPAPGSPPVQRTET 1067
Cdd:PHA03247  2779 PPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAG---PLPPPTSAQPTAPPPPPGPPPPSLP 2851
PHA03247 PHA03247
large tegument protein UL36; Provisional
 733-1170 3.89e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.85  E-value: 3.89e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173203326  733 RMPRDCRNLGTSPCLRKWGVPAMPPRFPIYRGLA-----PLYPKPQISPAVGRDPLKLG-MSWRPSAPFPSLPPAeaseg 806
Cdd:PHA03247  2666 RARRLGRAAQASSPPQRPRRRAARPTVGSLTSLAdppppPPTPEPAPHALVSATPLPPGpAAARQASPALPAAPA----- 2740

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173203326  807 ediggemeedlqnlPPPPleilmdksftalehpecsleetllPELQEARRPKRTWASPKLKASmsPMDLLPSKGNGSSPR 886
Cdd:PHA03247  2741 --------------PPAV------------------------PAGPATPGGPARPARPPTTAG--PPAPAPPAAPAAGPP 2780

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173203326  887 LQGTRPGSTSnvgnsrkltldLNSQQTANPSPEAEGGAQIQAPPENTAglskHHQKAIPRHHANPTSGQSRALEPSLARF 966
Cdd:PHA03247  2781 RRLTRPAVAS-----------LSESRESLPSPWDPADPPAAVLAPAAA----LPPAASPAGPLPPPTSAQPTAPPPPPGP 2845

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173203326  967 SRDPHSPEAS--------RKGPERSPPGVRKASP-PRAQWASQGGRRLQSLPSTHGPSQPGLRAVLSSPSPPLSPRTLSP 1037
Cdd:PHA03247  2846 PPPSLPLGGSvapggdvrRRPPSRSPAAKPAAPArPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPP 2925

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2173203326 1038 PATRKPTSPPCQYPQSNPAPGSPPVQRTETNTPSSASSSSP------SVSPSRGSKDSSHSEDSEGTTNKASRGTCSVLf 1111
Cdd:PHA03247  2926 PPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGAlvpgrvAVPRFRVPQPAPSREAPASSTPPLTGHSLSRV- 3004

                          410       420       430       440       450       460
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2173203326 1112 patafceakSSFSTS---HPQTLPEPGGLLRT--PAGGWRGSAGPRLRADSQKRTVLNALDALP 1170
Cdd:PHA03247  3005 ---------SSWASSlalHEETDPPPVSLKQTlwPPDDTEDSDADSLFDSDSERSDLEALDPLP 3059
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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