NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1897483227|ref|NP_001373510|]
View 

uncharacterized protein LOC796453 [Danio rerio]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
FAM104 super family cl21257
Family 104; This family of proteins is found in eukaryotes. Proteins in this family are ...
 28-137 1.52e-08

Family 104; This family of proteins is found in eukaryotes. Proteins in this family are typically between 113 and 185 amino acids in length. There is a conserved SLQ sequence motif.


The actual alignment was detected with superfamily member pfam15434:

Pssm-ID: 464715  Cd Length: 109  Bit Score: 49.47  E-value: 1.52e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897483227  28 RKRQRAEGDDEDAQMPQAKRLSSALQSSETARDSWESESSSSESSWISSPDHAAGSThcgGDVIGPPGGPGPCSPHSASK 107
Cdd:pfam15434   1 RKRRRNGNEEDNHVLPQPKRSSRNTVLQDSWDTESSSSDSGGSSSSINSPDRASGPE---SSLNPIMPGSSPNTPQFSQE 77

                          90       100       110
                  ....*....|....*....|....*....|
gi 1897483227 108 PSGpMDLLSYQHINRVLREAHFHSLQSRSQ 137
Cdd:pfam15434  78 QSA-LCQGPYFHINQILKEAHFHSLQHRGR 106
 
Name Accession Description Interval E-value
FAM104 pfam15434
Family 104; This family of proteins is found in eukaryotes. Proteins in this family are ...
 28-137 1.52e-08

Family 104; This family of proteins is found in eukaryotes. Proteins in this family are typically between 113 and 185 amino acids in length. There is a conserved SLQ sequence motif.


Pssm-ID: 464715  Cd Length: 109  Bit Score: 49.47  E-value: 1.52e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897483227  28 RKRQRAEGDDEDAQMPQAKRLSSALQSSETARDSWESESSSSESSWISSPDHAAGSThcgGDVIGPPGGPGPCSPHSASK 107
Cdd:pfam15434   1 RKRRRNGNEEDNHVLPQPKRSSRNTVLQDSWDTESSSSDSGGSSSSINSPDRASGPE---SSLNPIMPGSSPNTPQFSQE 77

                          90       100       110
                  ....*....|....*....|....*....|
gi 1897483227 108 PSGpMDLLSYQHINRVLREAHFHSLQSRSQ 137
Cdd:pfam15434  78 QSA-LCQGPYFHINQILKEAHFHSLQHRGR 106
 
Name Accession Description Interval E-value
FAM104 pfam15434
Family 104; This family of proteins is found in eukaryotes. Proteins in this family are ...
 28-137 1.52e-08

Family 104; This family of proteins is found in eukaryotes. Proteins in this family are typically between 113 and 185 amino acids in length. There is a conserved SLQ sequence motif.


Pssm-ID: 464715  Cd Length: 109  Bit Score: 49.47  E-value: 1.52e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1897483227  28 RKRQRAEGDDEDAQMPQAKRLSSALQSSETARDSWESESSSSESSWISSPDHAAGSThcgGDVIGPPGGPGPCSPHSASK 107
Cdd:pfam15434   1 RKRRRNGNEEDNHVLPQPKRSSRNTVLQDSWDTESSSSDSGGSSSSINSPDRASGPE---SSLNPIMPGSSPNTPQFSQE 77

                          90       100       110
                  ....*....|....*....|....*....|
gi 1897483227 108 PSGpMDLLSYQHINRVLREAHFHSLQSRSQ 137
Cdd:pfam15434  78 QSA-LCQGPYFHINQILKEAHFHSLQHRGR 106
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH