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Conserved domains on  [gi|1845971269|ref|NP_001370075|]
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Zc3h12a-like Ribonuclease NYN domain-containing protein [Caenorhabditis elegans]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
RNase_Zc3h12a_2 pfam14626
Zc3h12a-like Ribonuclease NYN domain; This family is found to be a divergent form of the ...
261-384 4.42e-80

Zc3h12a-like Ribonuclease NYN domain; This family is found to be a divergent form of the NYN-domain- containing RNAse family.


:

Pssm-ID: 405331  Cd Length: 122  Bit Score: 244.76  E-value: 4.42e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1845971269 261 YEPELNLPVKPLTDIILLFLIRGHKTTVYLPKYYQEFLSDCGVSKVDDLVAFQKLIDLGFIKFleITNPFNFKWFNVVAD 340
Cdd:pfam14626   1 YEPVLNLPVKPLFDIILLFLIRGHKTVVYLPKYYEDFISDCGVSKVDDLVAFQRLIDLDFIKF--ITVPENRKWFNVVCM 78
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1845971269 341 LADRCGAVFVSSEDYRQRKMKINYSKPSGRIITPCFLNAEDRLL 384
Cdd:pfam14626  79 LADRIGAVFVSSIEYRRRKLKITYSKASERIITPCFLNADDRLM 122
 
Name Accession Description Interval E-value
RNase_Zc3h12a_2 pfam14626
Zc3h12a-like Ribonuclease NYN domain; This family is found to be a divergent form of the ...
261-384 4.42e-80

Zc3h12a-like Ribonuclease NYN domain; This family is found to be a divergent form of the NYN-domain- containing RNAse family.


Pssm-ID: 405331  Cd Length: 122  Bit Score: 244.76  E-value: 4.42e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1845971269 261 YEPELNLPVKPLTDIILLFLIRGHKTTVYLPKYYQEFLSDCGVSKVDDLVAFQKLIDLGFIKFleITNPFNFKWFNVVAD 340
Cdd:pfam14626   1 YEPVLNLPVKPLFDIILLFLIRGHKTVVYLPKYYEDFISDCGVSKVDDLVAFQRLIDLDFIKF--ITVPENRKWFNVVCM 78
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1845971269 341 LADRCGAVFVSSEDYRQRKMKINYSKPSGRIITPCFLNAEDRLL 384
Cdd:pfam14626  79 LADRIGAVFVSSIEYRRRKLKITYSKASERIITPCFLNADDRLM 122
 
Name Accession Description Interval E-value
RNase_Zc3h12a_2 pfam14626
Zc3h12a-like Ribonuclease NYN domain; This family is found to be a divergent form of the ...
261-384 4.42e-80

Zc3h12a-like Ribonuclease NYN domain; This family is found to be a divergent form of the NYN-domain- containing RNAse family.


Pssm-ID: 405331  Cd Length: 122  Bit Score: 244.76  E-value: 4.42e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1845971269 261 YEPELNLPVKPLTDIILLFLIRGHKTTVYLPKYYQEFLSDCGVSKVDDLVAFQKLIDLGFIKFleITNPFNFKWFNVVAD 340
Cdd:pfam14626   1 YEPVLNLPVKPLFDIILLFLIRGHKTVVYLPKYYEDFISDCGVSKVDDLVAFQRLIDLDFIKF--ITVPENRKWFNVVCM 78
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 1845971269 341 LADRCGAVFVSSEDYRQRKMKINYSKPSGRIITPCFLNAEDRLL 384
Cdd:pfam14626  79 LADRIGAVFVSSIEYRRRKLKITYSKASERIITPCFLNADDRLM 122
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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