myocyte-specific enhancer factor 2A isoform 3 [Homo sapiens]
Protein Classification
List of domain hits
| Name | Accession | Description | Interval | E-value | ||
| HJURP_C super family | cl13744 | Holliday junction regulator protein family C-terminal repeat; Although this family is ... |
29-84 | 1.56e-04 | ||
Holliday junction regulator protein family C-terminal repeat; Although this family is conserved in the Holliday junction regulator, HJURP, proteins in higher eukaryotes, alongside an Scm3, pfam10384, family, its exact function is not known. The C-terminal region of Scm3 proteins has been evolving rapidly, and this short repeat at the C-terminal end can be present in up to two copies in the higher eukaryotes. The actual alignment was detected with superfamily member pfam12347: Pssm-ID: 463543 Cd Length: 63 Bit Score: 39.64 E-value: 1.56e-04
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| MADS super family | cl00109 | MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic ... |
2-25 | 4.43e-04 | ||
MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators. Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. The actual alignment was detected with superfamily member smart00432: Pssm-ID: 469617 [Multi-domain] Cd Length: 59 Bit Score: 38.31 E-value: 4.43e-04
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| Name | Accession | Description | Interval | E-value | ||
| HJURP_C | pfam12347 | Holliday junction regulator protein family C-terminal repeat; Although this family is ... |
29-84 | 1.56e-04 | ||
Holliday junction regulator protein family C-terminal repeat; Although this family is conserved in the Holliday junction regulator, HJURP, proteins in higher eukaryotes, alongside an Scm3, pfam10384, family, its exact function is not known. The C-terminal region of Scm3 proteins has been evolving rapidly, and this short repeat at the C-terminal end can be present in up to two copies in the higher eukaryotes. Pssm-ID: 463543 Cd Length: 63 Bit Score: 39.64 E-value: 1.56e-04
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| MADS | smart00432 | MADS domain; |
2-25 | 4.43e-04 | ||
MADS domain; Pssm-ID: 197721 [Multi-domain] Cd Length: 59 Bit Score: 38.31 E-value: 4.43e-04
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| MADS | cd00120 | MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic ... |
2-25 | 1.61e-03 | ||
MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators. Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Pssm-ID: 238067 [Multi-domain] Cd Length: 59 Bit Score: 36.72 E-value: 1.61e-03
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| Name | Accession | Description | Interval | E-value | ||
| HJURP_C | pfam12347 | Holliday junction regulator protein family C-terminal repeat; Although this family is ... |
29-84 | 1.56e-04 | ||
Holliday junction regulator protein family C-terminal repeat; Although this family is conserved in the Holliday junction regulator, HJURP, proteins in higher eukaryotes, alongside an Scm3, pfam10384, family, its exact function is not known. The C-terminal region of Scm3 proteins has been evolving rapidly, and this short repeat at the C-terminal end can be present in up to two copies in the higher eukaryotes. Pssm-ID: 463543 Cd Length: 63 Bit Score: 39.64 E-value: 1.56e-04
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| MADS | smart00432 | MADS domain; |
2-25 | 4.43e-04 | ||
MADS domain; Pssm-ID: 197721 [Multi-domain] Cd Length: 59 Bit Score: 38.31 E-value: 4.43e-04
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| MADS | cd00120 | MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic ... |
2-25 | 1.61e-03 | ||
MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators. Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Pssm-ID: 238067 [Multi-domain] Cd Length: 59 Bit Score: 36.72 E-value: 1.61e-03
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| MADS_MEF2_like | cd00265 | MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, ... |
2-25 | 1.68e-03 | ||
MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Pssm-ID: 238165 [Multi-domain] Cd Length: 77 Bit Score: 37.15 E-value: 1.68e-03
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