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Conserved domains on  [gi|1254044672|ref|NP_001343629|]
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WSN domain-containing protein [Caenorhabditis elegans]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG1750 super family cl34354
Predicted archaeal serine protease, S18 family [General function prediction only];
1-62 1.68e-04

Predicted archaeal serine protease, S18 family [General function prediction only];


The actual alignment was detected with superfamily member COG1750:

Pssm-ID: 441356 [Multi-domain]  Cd Length: 213  Bit Score: 41.89  E-value: 1.68e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1254044672   1 MCGVVNLFGGIEAVGGLDTKIRVAIDNGFEQILVPKVCAANYDKRL-------------KLQIEVIEVRTFYEAL 62
Cdd:COG1750   135 MTGMINPDGSIGPVGGVYEKLEAAASAGAKYFLIPKGQAILTGYNTqvgetvdlveygkELGVKVIEVSTIADAL 209
 
Name Accession Description Interval E-value
COG1750 COG1750
Predicted archaeal serine protease, S18 family [General function prediction only];
1-62 1.68e-04

Predicted archaeal serine protease, S18 family [General function prediction only];


Pssm-ID: 441356 [Multi-domain]  Cd Length: 213  Bit Score: 41.89  E-value: 1.68e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1254044672   1 MCGVVNLFGGIEAVGGLDTKIRVAIDNGFEQILVPKVCAANYDKRL-------------KLQIEVIEVRTFYEAL 62
Cdd:COG1750   135 MTGMINPDGSIGPVGGVYEKLEAAASAGAKYFLIPKGQAILTGYNTqvgetvdlveygkELGVKVIEVSTIADAL 209
 
Name Accession Description Interval E-value
COG1750 COG1750
Predicted archaeal serine protease, S18 family [General function prediction only];
1-62 1.68e-04

Predicted archaeal serine protease, S18 family [General function prediction only];


Pssm-ID: 441356 [Multi-domain]  Cd Length: 213  Bit Score: 41.89  E-value: 1.68e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1254044672   1 MCGVVNLFGGIEAVGGLDTKIRVAIDNGFEQILVPKVCAANYDKRL-------------KLQIEVIEVRTFYEAL 62
Cdd:COG1750   135 MTGMINPDGSIGPVGGVYEKLEAAASAGAKYFLIPKGQAILTGYNTqvgetvdlveygkELGVKVIEVSTIADAL 209
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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