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Conserved domains on  [gi|1124872647|ref|NP_001334876|]
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intraflagellar transport protein 81 homolog isoform 3 [Homo sapiens]

Protein Classification

coiled-coil domain-containing protein( domain architecture ID 1000037)

coiled-coil domain-containing protein contains a region with alpha-helical coiled-coil sequence signatures that is being annotated by a variety of protein family models, not necessarily indicating family membership

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
PRK12704 super family cl36166
phosphodiesterase; Provisional
 27-182 3.72e-06

phosphodiesterase; Provisional


The actual alignment was detected with superfamily member PRK12704:

Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 48.62  E-value: 3.72e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124872647  27 IEGKLSLYRQQASIISRKKEAKAEELQeaKEKLASLEREASvkrNQTREFDGTEVLKGDEFKRYVNKLRSKSTVFKKKHQ 106
Cdd:PRK12704   29 AEAKIKEAEEEAKRILEEAKKEAEAIK--KEALLEAKEEIH---KLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLE 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124872647 107 IIAELKAEfglLQRTEELLKQRHENIQQQLQTMEEKkgisgYSYTQEELERVSALKSE------VDEMKGRTLDDMSEMV 180
Cdd:PRK12704  104 LLEKREEE---LEKKEKELEQKQQELEKKEEELEEL-----IEEQLQELERISGLTAEeakeilLEKVEEEARHEAAVLI 175


                  ..
gi 1124872647 181 KK 182
Cdd:PRK12704  176 KE 177
mukB super family cl35272
chromosome partition protein MukB;
49-317 1.80e-04

chromosome partition protein MukB;


The actual alignment was detected with superfamily member PRK04863:

Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 43.79  E-value: 1.80e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124872647   49 AEELQEAKEKLASLEREASVKRNQTREfdgtevlkgdefkryvnkLRSKSTVFKKKHQIIAELKAEFGLLQrtEELLKQR 128
Cdd:PRK04863   836 EAELRQLNRRRVELERALADHESQEQQ------------------QRSQLEQAKEGLSALNRLLPRLNLLA--DETLADR 895

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124872647  129 HENIQQQLQTMEE-KKGISGYSYTQEELER-VSALKSevDEMKGRTLDDMSEMVKKLYSLVSEKKSALASVIKEL----- 201
Cdd:PRK04863   896 VEEIREQLDEAEEaKRFVQQHGNALAQLEPiVSVLQS--DPEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRRahfsy 973

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124872647  202 --------------RQLRQKYQELTQECDEKK----------SQYDSCAAGLESNRSKLEQEVRRLREEClqEESRYHYT 257
Cdd:PRK04863   974 edaaemlaknsdlnEKLRQRLEQAEQERTRAReqlrqaqaqlAQYNQVLASLKSSYDAKRQMLQELKQEL--QDLGVPAD 1051

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124872647  258 ncmiKNLEVQLRRATDEMKAYISSdQQEKRKAIREQYTKNTAEQENLGKKLREKQKVIRE 317
Cdd:PRK04863  1052 ----SGAEERARARRDELHARLSA-NRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHE 1106
 
Name Accession Description Interval E-value
PRK12704 PRK12704
phosphodiesterase; Provisional
 27-182 3.72e-06

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 48.62  E-value: 3.72e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124872647  27 IEGKLSLYRQQASIISRKKEAKAEELQeaKEKLASLEREASvkrNQTREFDGTEVLKGDEFKRYVNKLRSKSTVFKKKHQ 106
Cdd:PRK12704   29 AEAKIKEAEEEAKRILEEAKKEAEAIK--KEALLEAKEEIH---KLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLE 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124872647 107 IIAELKAEfglLQRTEELLKQRHENIQQQLQTMEEKkgisgYSYTQEELERVSALKSE------VDEMKGRTLDDMSEMV 180
Cdd:PRK12704  104 LLEKREEE---LEKKEKELEQKQQELEKKEEELEEL-----IEEQLQELERISGLTAEeakeilLEKVEEEARHEAAVLI 175


                  ..
gi 1124872647 181 KK 182
Cdd:PRK12704  176 KE 177
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 6-246 5.39e-05

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 45.43  E-value: 5.39e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124872647    6 INEINTEINQLiEKKMMRNEPIEGKLSLYRQQASIISRKKEAKAEELQEAKEKLASLEREASVKRNQTREfdgtevlKGD 85
Cdd:TIGR02168  721 LEELSRQISAL-RKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEA-------QIE 792

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124872647   86 EFKRYVNKLRSKSTVFKKKHQiiaELKAEFGLLQRTEELLKQRHENIQQQLQTMEEKKGIsgysyTQEELERVSA----L 161
Cdd:TIGR02168  793 QLKEELKALREALDELRAELT---LLNEEAANLRERLESLERRIAATERRLEDLEEQIEE-----LSEDIESLAAeieeL 864

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124872647  162 KSEVDEMKgRTLDDMSEMVKKLYSLVSEKKSALASVIKELRQLRQKYQELTQECDEKKSQYDSCAAGLESNRSKLEQEVR 241
Cdd:TIGR02168  865 EELIEELE-SELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQE 943


                   ....*
gi 1124872647  242 RLREE 246
Cdd:TIGR02168  944 RLSEE 948
mukB PRK04863
chromosome partition protein MukB;
49-317 1.80e-04

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 43.79  E-value: 1.80e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124872647   49 AEELQEAKEKLASLEREASVKRNQTREfdgtevlkgdefkryvnkLRSKSTVFKKKHQIIAELKAEFGLLQrtEELLKQR 128
Cdd:PRK04863   836 EAELRQLNRRRVELERALADHESQEQQ------------------QRSQLEQAKEGLSALNRLLPRLNLLA--DETLADR 895

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124872647  129 HENIQQQLQTMEE-KKGISGYSYTQEELER-VSALKSevDEMKGRTLDDMSEMVKKLYSLVSEKKSALASVIKEL----- 201
Cdd:PRK04863   896 VEEIREQLDEAEEaKRFVQQHGNALAQLEPiVSVLQS--DPEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRRahfsy 973

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124872647  202 --------------RQLRQKYQELTQECDEKK----------SQYDSCAAGLESNRSKLEQEVRRLREEClqEESRYHYT 257
Cdd:PRK04863   974 edaaemlaknsdlnEKLRQRLEQAEQERTRAReqlrqaqaqlAQYNQVLASLKSSYDAKRQMLQELKQEL--QDLGVPAD 1051

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124872647  258 ncmiKNLEVQLRRATDEMKAYISSdQQEKRKAIREQYTKNTAEQENLGKKLREKQKVIRE 317
Cdd:PRK04863  1052 ----SGAEERARARRDELHARLSA-NRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHE 1106
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 27-302 3.36e-04

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 42.62  E-value: 3.36e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124872647  27 IEGKLSLYRQQASIISRKKEAKAEELQEAKEKLASLEREASVKRNQTREFDGTEVLKGDEFKRYVNKLRSKSTVFKKKHQ 106
Cdd:COG1196   237 LEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEE 316

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124872647 107 IIAELKAEFGLLQRTEELLKQRHENIQQQLQTMEEKKGISgysytQEELERVSALKSEVDEMKGRTLDDMSEMVKKLysl 186
Cdd:COG1196   317 RLEELEEELAELEEELEELEEELEELEEELEEAEEELEEA-----EAELAEAEEALLEAEAELAEAEEELEELAEEL--- 388

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124872647 187 vSEKKSALASVIKELRQLRQKYQELTQECDEKKSQYDSCAAGLESNRSKLEQEVRRLREEclQEESRYHYTNcmIKNLEV 266
Cdd:COG1196   389 -LEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEA--AEEEAELEEE--EEALLE 463

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 1124872647 267 QLRRATDEMKAYISSDQQEKRKAIREQYTKNTAEQE 302
Cdd:COG1196   464 LLAELLEEAALLEAALAELLEELAEAAARLLLLLEA 499
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 37-335 8.43e-04

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 41.46  E-value: 8.43e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124872647  37 QASIISRKKEAKAEELQEAKEKLASLEREASVKRNQTREFDGTEVLKGDEFKRYVNKLRSKSTVFKKKHQIIAELKAEFG 116
Cdd:COG1196   226 EAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIA 305

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124872647 117 LLQRTEELLKQRHENIQQQLQTMEEKKgisgysytQEELERVSALKSEVDEMKGRtLDDMSEMVKKLYSLVSEKKSALAS 196
Cdd:COG1196   306 RLEERRRELEERLEELEEELAELEEEL--------EELEEELEELEEELEEAEEE-LEEAEAELAEAEEALLEAEAELAE 376

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124872647 197 VIKELRQLRQKYQELTQECDEKKSQydscAAGLESNRSKLEQEVRRLREECLQEESRyhytncmiknlEVQLRRATDEMK 276
Cdd:COG1196   377 AEEELEELAEELLEALRAAAELAAQ----LEELEEAEEALLERLERLEEELEELEEA-----------LAELEEEEEEEE 441

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1124872647 277 AYISSDQQEKRKAIREQYTKNTAEQENLGKKLREKQKVIRESHGPNMKQAKMWRDLEQL 335
Cdd:COG1196   442 EALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAE 500
 
Name Accession Description Interval E-value
PRK12704 PRK12704
phosphodiesterase; Provisional
 27-182 3.72e-06

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 48.62  E-value: 3.72e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124872647  27 IEGKLSLYRQQASIISRKKEAKAEELQeaKEKLASLEREASvkrNQTREFDGTEVLKGDEFKRYVNKLRSKSTVFKKKHQ 106
Cdd:PRK12704   29 AEAKIKEAEEEAKRILEEAKKEAEAIK--KEALLEAKEEIH---KLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLE 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124872647 107 IIAELKAEfglLQRTEELLKQRHENIQQQLQTMEEKkgisgYSYTQEELERVSALKSE------VDEMKGRTLDDMSEMV 180
Cdd:PRK12704  104 LLEKREEE---LEKKEKELEQKQQELEKKEEELEEL-----IEEQLQELERISGLTAEeakeilLEKVEEEARHEAAVLI 175


                  ..
gi 1124872647 181 KK 182
Cdd:PRK12704  176 KE 177
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 6-246 5.39e-05

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 45.43  E-value: 5.39e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124872647    6 INEINTEINQLiEKKMMRNEPIEGKLSLYRQQASIISRKKEAKAEELQEAKEKLASLEREASVKRNQTREfdgtevlKGD 85
Cdd:TIGR02168  721 LEELSRQISAL-RKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEA-------QIE 792

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124872647   86 EFKRYVNKLRSKSTVFKKKHQiiaELKAEFGLLQRTEELLKQRHENIQQQLQTMEEKKGIsgysyTQEELERVSA----L 161
Cdd:TIGR02168  793 QLKEELKALREALDELRAELT---LLNEEAANLRERLESLERRIAATERRLEDLEEQIEE-----LSEDIESLAAeieeL 864

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124872647  162 KSEVDEMKgRTLDDMSEMVKKLYSLVSEKKSALASVIKELRQLRQKYQELTQECDEKKSQYDSCAAGLESNRSKLEQEVR 241
Cdd:TIGR02168  865 EELIEELE-SELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQE 943


                   ....*
gi 1124872647  242 RLREE 246
Cdd:TIGR02168  944 RLSEE 948
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 43-312 1.15e-04

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 44.29  E-value: 1.15e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124872647   43 RKKEAKAEELQEAKEKLASLEREASVKRNQtREFDGTEVLKGDEFK---------RYVNKLRSKSTVFKKKHQIIAELKA 113
Cdd:TIGR02169  170 RKKEKALEELEEVEENIERLDLIIDEKRQQ-LERLRREREKAERYQallkekreyEGYELLKEKEALERQKEAIERQLAS 248

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124872647  114 EFGLLQRTEELLKQRHENIQQQLQTMEE------KKGISGYSYTQEELERVSALKSEVD---EMKGRTLDDMSEMVKKLY 184
Cdd:TIGR02169  249 LEEELEKLTEEISELEKRLEEIEQLLEElnkkikDLGEEEQLRVKEKIGELEAEIASLErsiAEKERELEDAEERLAKLE 328

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124872647  185 SLVSEKKSALASVIKELRQLRQKYQELTQECDEKKSQYDSCAAGLESnrskLEQEVRRLREECLQEESRYHYTNCMIKNL 264
Cdd:TIGR02169  329 AEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEE----VDKEFAETRDELKDYREKLEKLKREINEL 404

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|
gi 1124872647  265 EVQLRRATDEMKAYIS--SDQQEKRKAIREQYTKNTAEQENLGKKLREKQ 312
Cdd:TIGR02169  405 KRELDRLQEELQRLSEelADLNAAIAGIEAKINELEEEKEDKALEIKKQE 454
mukB PRK04863
chromosome partition protein MukB;
49-317 1.80e-04

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 43.79  E-value: 1.80e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124872647   49 AEELQEAKEKLASLEREASVKRNQTREfdgtevlkgdefkryvnkLRSKSTVFKKKHQIIAELKAEFGLLQrtEELLKQR 128
Cdd:PRK04863   836 EAELRQLNRRRVELERALADHESQEQQ------------------QRSQLEQAKEGLSALNRLLPRLNLLA--DETLADR 895

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124872647  129 HENIQQQLQTMEE-KKGISGYSYTQEELER-VSALKSevDEMKGRTLDDMSEMVKKLYSLVSEKKSALASVIKEL----- 201
Cdd:PRK04863   896 VEEIREQLDEAEEaKRFVQQHGNALAQLEPiVSVLQS--DPEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRRahfsy 973

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124872647  202 --------------RQLRQKYQELTQECDEKK----------SQYDSCAAGLESNRSKLEQEVRRLREEClqEESRYHYT 257
Cdd:PRK04863   974 edaaemlaknsdlnEKLRQRLEQAEQERTRAReqlrqaqaqlAQYNQVLASLKSSYDAKRQMLQELKQEL--QDLGVPAD 1051

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124872647  258 ncmiKNLEVQLRRATDEMKAYISSdQQEKRKAIREQYTKNTAEQENLGKKLREKQKVIRE 317
Cdd:PRK04863  1052 ----SGAEERARARRDELHARLSA-NRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHE 1106
PTZ00121 PTZ00121
MAEBL; Provisional
 12-341 2.30e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 43.21  E-value: 2.30e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124872647   12 EINQLIEKKMMRNEPIEGKLSLYRQQASIISRKKEAKAEELQEAKEK--LASLEREASVKRNQTREFDGTEVLKGDEFKR 89
Cdd:PTZ00121  1319 EAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKaeAAEKKKEEAKKKADAAKKKAEEKKKADEAKK 1398

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124872647   90 YVNKLRSKSTVFKKKHQI---IAELKAEFGLLQRTEELLKQRHE--NIQQQLQTMEEKKGISGYSYTQEELERVSALKSE 164
Cdd:PTZ00121  1399 KAEEDKKKADELKKAAAAkkkADEAKKKAEEKKKADEAKKKAEEakKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKK 1478

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124872647  165 VDEM-KGRTLDDMSEMVKKLYSLVSEKKSALASViKELRQLRQKYQELTQECDEKKSQYDSCAAGLESNRS--------- 234
Cdd:PTZ00121  1479 AEEAkKADEAKKKAEEAKKKADEAKKAAEAKKKA-DEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKAdelkkaeel 1557

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124872647  235 KLEQEVRRLREECLQEESRYHYTNCMIKNLEVQLRRATDEMKAYISSDQQEKRKAIREQYTKNTAEQENLGKKLREKQKV 314
Cdd:PTZ00121  1558 KKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQ 1637

                          330       340
                   ....*....|....*....|....*..
gi 1124872647  315 IRESHGPNMKQAKMWRDLEQLMECKKQ 341
Cdd:PTZ00121  1638 LKKKEAEEKKKAEELKKAEEENKIKAA 1664
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 27-302 3.36e-04

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 42.62  E-value: 3.36e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124872647  27 IEGKLSLYRQQASIISRKKEAKAEELQEAKEKLASLEREASVKRNQTREFDGTEVLKGDEFKRYVNKLRSKSTVFKKKHQ 106
Cdd:COG1196   237 LEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEE 316

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124872647 107 IIAELKAEFGLLQRTEELLKQRHENIQQQLQTMEEKKGISgysytQEELERVSALKSEVDEMKGRTLDDMSEMVKKLysl 186
Cdd:COG1196   317 RLEELEEELAELEEELEELEEELEELEEELEEAEEELEEA-----EAELAEAEEALLEAEAELAEAEEELEELAEEL--- 388

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124872647 187 vSEKKSALASVIKELRQLRQKYQELTQECDEKKSQYDSCAAGLESNRSKLEQEVRRLREEclQEESRYHYTNcmIKNLEV 266
Cdd:COG1196   389 -LEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEA--AEEEAELEEE--EEALLE 463

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 1124872647 267 QLRRATDEMKAYISSDQQEKRKAIREQYTKNTAEQE 302
Cdd:COG1196   464 LLAELLEEAALLEAALAELLEELAEAAARLLLLLEA 499
CwlO1 COG3883
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ...
 44-253 3.94e-04

Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];


Pssm-ID: 443091 [Multi-domain]  Cd Length: 379  Bit Score: 42.12  E-value: 3.94e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124872647  44 KKEAKAEELQEAKEKLASLEREASVKRNQtrefdgtevlkgdefkryVNKLRSKSTVFKKKhqiIAELKAEfglLQRTEE 123
Cdd:COG3883    24 ELSELQAELEAAQAELDALQAELEELNEE------------------YNELQAELEALQAE---IDKLQAE---IAEAEA 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124872647 124 LLKQRHENIQQQLQTMEEKKGISGY-------SYTQEELERVSALKSEVDEMKgRTLDDMSEMVKKLyslvSEKKSALAS 196
Cdd:COG3883    80 EIEERREELGERARALYRSGGSVSYldvllgsESFSDFLDRLSALSKIADADA-DLLEELKADKAEL----EAKKAELEA 154

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1124872647 197 VIKELRQLRQKYQELTQECDEKKSQYDSCAAGLESNRSKLEQEVRRLREECLQEESR 253
Cdd:COG3883   155 KLAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAA 211
PTZ00121 PTZ00121
MAEBL; Provisional
 43-337 4.36e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 42.44  E-value: 4.36e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124872647   43 RKKEAKAEELQEAKEKLASLEREASVKRNQTREFDGTEVLKGDEFKRYVNKLRSKSTVFKKKHQIIAELKAEFGLLQRTE 122
Cdd:PTZ00121  1476 KKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAE 1555

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124872647  123 ELLKQRHENIQQQLQTMEEKKGISGY------SYTQEELERVSALKSEVDEMKGRTLDDMSEMVKKLYSL--VSEKKSAL 194
Cdd:PTZ00121  1556 ELKKAEEKKKAEEAKKAEEDKNMALRkaeeakKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELkkAEEEKKKV 1635

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124872647  195 ASVIKELRQLRQKYQELTQECDEKKSQYDSCAAGLESNRSKLEQEVRRLREECLQEESRYHYTNCMIKNLEVQLRRATDE 274
Cdd:PTZ00121  1636 EQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEK 1715

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1124872647  275 MKAYISSDQQEKRKAIREQYTKNTAEQENLGKKLR----EKQKVIRESHGPNMKQAKMWRDLEQLME 337
Cdd:PTZ00121  1716 KKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKkdeeEKKKIAHLKKEEEKKAEEIRKEKEAVIE 1782
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 37-335 8.43e-04

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 41.46  E-value: 8.43e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124872647  37 QASIISRKKEAKAEELQEAKEKLASLEREASVKRNQTREFDGTEVLKGDEFKRYVNKLRSKSTVFKKKHQIIAELKAEFG 116
Cdd:COG1196   226 EAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIA 305

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124872647 117 LLQRTEELLKQRHENIQQQLQTMEEKKgisgysytQEELERVSALKSEVDEMKGRtLDDMSEMVKKLYSLVSEKKSALAS 196
Cdd:COG1196   306 RLEERRRELEERLEELEEELAELEEEL--------EELEEELEELEEELEEAEEE-LEEAEAELAEAEEALLEAEAELAE 376

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124872647 197 VIKELRQLRQKYQELTQECDEKKSQydscAAGLESNRSKLEQEVRRLREECLQEESRyhytncmiknlEVQLRRATDEMK 276
Cdd:COG1196   377 AEEELEELAEELLEALRAAAELAAQ----LEELEEAEEALLERLERLEEELEELEEA-----------LAELEEEEEEEE 441

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1124872647 277 AYISSDQQEKRKAIREQYTKNTAEQENLGKKLREKQKVIRESHGPNMKQAKMWRDLEQL 335
Cdd:COG1196   442 EALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAE 500
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
27-224 1.11e-03

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 41.16  E-value: 1.11e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124872647  27 IEGKLSLYRQQASIISRKKEAKAEELQEAKEKLASLEREASVKRNQTREFDGTEVLKG--DEFKRYVNKLRSKSTVFKKK 104
Cdd:COG3206   210 LSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSPVIQQlrAQLAELEAELAELSARYTPN 289

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124872647 105 HQIIAELKAEfglLQRTEELLKQRHENIQQQLQTMeekkgisgysyTQEELERVSALKSEVDEMKGRtlddmsemvkkly 184
Cdd:COG3206   290 HPDVIALRAQ---IAALRAQLQQEAQRILASLEAE-----------LEALQAREASLQAQLAQLEAR------------- 342

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1124872647 185 slvsekksalasvIKELRQLRQKYQELTQECDEKKSQYDS 224
Cdd:COG3206   343 -------------LAELPELEAELRRLEREVEVARELYES 369
PTZ00121 PTZ00121
MAEBL; Provisional
 23-362 1.37e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 40.89  E-value: 1.37e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124872647   23 RNEPIEGKLSLYRQQASIISRKKEAK--AEELQEAKEKLASLE-REASVKRNQTREFDGTEVLKGDEFKRyVNKLRsKST 99
Cdd:PTZ00121  1484 KADEAKKKAEEAKKKADEAKKAAEAKkkADEAKKAEEAKKADEaKKAEEAKKADEAKKAEEKKKADELKK-AEELK-KAE 1561

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124872647  100 VFKKKHQIIAELKAEFGLLQRTEELLKQRHENIQQQLQTMEEKKGISGYSYTQEELERVSA--LKSEVDEMKG--RTLDD 175
Cdd:PTZ00121  1562 EKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAeeLKKAEEEKKKveQLKKK 1641

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124872647  176 MSEMVKKLYSLVSEKKSALASVIKELRQL---RQKYQELTQECDEKKSQYDSCAAGLESNRsKLEQEVRRLREECLQEES 252
Cdd:PTZ00121  1642 EAEEKKKAEELKKAEEENKIKAAEEAKKAeedKKKAEEAKKAEEDEKKAAEALKKEAEEAK-KAEELKKKEAEEKKKAEE 1720

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124872647  253 ryhytncmIKNLEVQLRRATDEMKAYISSDQQEKRKAIREQYTKNTAEQenLGKKLREKQKVIRESHGPNMKQAKMWRDL 332
Cdd:PTZ00121  1721 --------LKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAH--LKKEEEKKAEEIRKEKEAVIEEELDEEDE 1790

                          330       340       350
                   ....*....|....*....|....*....|
gi 1124872647  333 EQLMECKKqcflKQQSQTSIGQVIQEGGED 362
Cdd:PTZ00121  1791 KRRMEVDK----KIKDIFDNFANIIEGGKE 1816
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 42-318 1.60e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 40.69  E-value: 1.60e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124872647  42 SRKKEAKaEELQEAKEKLA--------------SLEREAsvkrNQTREFDgteVLKGDEFKR----YVNKLRSKSTVFKK 103
Cdd:COG1196   172 ERKEEAE-RKLEATEENLErledilgelerqlePLERQA----EKAERYR---ELKEELKELeaelLLLKLRELEAELEE 243

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124872647 104 KHQIIAELKAEFGLLQRTEELLKQRHENIQQQLQTMEEKKgisgysytQEELERVSALKSEVDEMKGRtLDDMSEMVKKL 183
Cdd:COG1196   244 LEAELEELEAELEELEAELAELEAELEELRLELEELELEL--------EEAQAEEYELLAELARLEQD-IARLEERRREL 314

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124872647 184 YSLVSEKKSALASVIKELRQLRQKYQELTQECDEKKSQYDSCAAGLESNRSKLEQEVRRLREECLQEESRyhytncmiKN 263
Cdd:COG1196   315 EERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEEL--------AE 386

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1124872647 264 LEVQLRRATDEMKAYISSDQQEKRKAIREQYTKNTAEQENLGKKLREKQKVIRES 318
Cdd:COG1196   387 ELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEE 441
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 28-312 2.66e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 40.04  E-value: 2.66e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124872647   28 EGKLSLYRQQASIISRKKEAKAEELQEAKEKLASLEREASVKRNQTREFDGtevlkgdEFKRYVNKlrskstvfkkkhqi 107
Cdd:TIGR02168  238 REELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQK-------ELYALANE-------------- 296

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124872647  108 IAELKAEFGLLQRTEELLKQRHENIQQQLQTMEEKKgisgysytQEELERVSALKSEVDEMKGRtLDDMSEMVKKLYSLV 187
Cdd:TIGR02168  297 ISRLEQQKQILRERLANLERQLEELEAQLEELESKL--------DELAEELAELEEKLEELKEE-LESLEAELEELEAEL 367

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124872647  188 SEKKSALASVIKELRQLRQKYQELTQecdekksQYDSCAAGLESNRSKLEQ---EVRRLREECLQEESRYHYTNCMIKNL 264
Cdd:TIGR02168  368 EELESRLEELEEQLETLRSKVAQLEL-------QIASLNNEIERLEARLERledRRERLQQEIEELLKKLEEAELKELQA 440

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*...
gi 1124872647  265 EVQLRRATDEMKAYISSDQQEKRKAIREQYTKNTAEQENLGKKLREKQ 312
Cdd:TIGR02168  441 ELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQ 488
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 11-277 5.85e-03

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 38.90  E-value: 5.85e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124872647   11 TEINQLIEKKMMRNEPIEGKLSLYRQQASIISRKKEAKAEELQEAKEKLASLERE-----ASVKRNQTREFDGTEVL--- 82
Cdd:TIGR02169  698 RRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEienvkSELKELEARIEELEEDLhkl 777

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124872647   83 -----------KGDEFKRYVNKLRSKSTVFKKKHQIIAELKAEFGLLQRTEELLKQRHENIQQQLQTMEEKkgISGYSYT 151
Cdd:TIGR02169  778 eealndlearlSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQ--IKSIEKE 855

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124872647  152 QEELE-RVSALKSEVDEMKGRtLDDMSEMVKKLYSLVSEkksalasVIKELRQLRQKYQELTQECDEKKSQydscAAGLE 230
Cdd:TIGR02169  856 IENLNgKKEELEEELEELEAA-LRDLESRLGDLKKERDE-------LEAQLRELERKIEELEAQIEKKRKR----LSELK 923

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*..
gi 1124872647  231 SNRSKLEQEVRRLrEECLQEESRYHYTNCMIKNLEVQLRRATDEMKA 277
Cdd:TIGR02169  924 AKLEALEEELSEI-EDPKGEDEEIPEEELSLEDVQAELQRVEEEIRA 969
PRK12704 PRK12704
phosphodiesterase; Provisional
 41-218 5.97e-03

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 38.61  E-value: 5.97e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124872647  41 ISRKKEAKAEElqEAKEKLASLEREAsvkrnqtrefdgtEVLKGDEfkryvnKLRSKSTVFKKKHQIIAELKAEFGLLQR 120
Cdd:PRK12704   28 IAEAKIKEAEE--EAKRILEEAKKEA-------------EAIKKEA------LLEAKEEIHKLRNEFEKELRERRNELQK 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124872647 121 TEELLKQRHENIQQQLQTMEEKKgisgySYTQEELERVSALKSEVDEMKgRTLDDM-SEMVKKLYS---LVSE--KKSAL 194
Cdd:PRK12704   87 LEKRLLQKEENLDRKLELLEKRE-----EELEKKEKELEQKQQELEKKE-EELEELiEEQLQELERisgLTAEeaKEILL 160

                         170       180
                  ....*....|....*....|....*....
gi 1124872647 195 ASVIKELRQ-----LRQKYQELTQECDEK 218
Cdd:PRK12704  161 EKVEEEARHeaavlIKEIEEEAKEEADKK 189
PTZ00121 PTZ00121
MAEBL; Provisional
 28-334 9.79e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 38.20  E-value: 9.79e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124872647   28 EGKLSLYRQQASIISRKKEAKAEELQEAKE--KLASLEREASVKRNQTREFDGTEVLKGDEFKRYVNKLRSKSTVFKKKH 105
Cdd:PTZ00121  1259 EARMAHFARRQAAIKAEEARKADELKKAEEkkKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKA 1338

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124872647  106 QiIAELKAEFGLLQ---RTEELLKQRHENIQQQLQTMEEKKGISGYSYTQEELERVSALKSEVDEMKGRTLDDMSEMVKK 182
Cdd:PTZ00121  1339 E-EAKKAAEAAKAEaeaAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAK 1417

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1124872647  183 LYSLVSEKKSALASVIKELR---QLRQKYQELTQECDEKKSQYDSCAAGLESNRSkleQEVRRLREECLQEESRYHYTNC 259
Cdd:PTZ00121  1418 KKADEAKKKAEEKKKADEAKkkaEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKA---DEAKKKAEEAKKADEAKKKAEE 1494

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1124872647  260 MIKNLEVQLRRATDEMKAYISSDQQEKRKAIREQYTKNTAEQENLgKKLREKQKVIRESHGPNMKQAKMWRDLEQ 334
Cdd:PTZ00121  1495 AKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEA-KKAEEKKKADELKKAEELKKAEEKKKAEE 1568
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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