NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1101010094|ref|NP_001333861|]
View 

zinc finger protein 488 [Homo sapiens]

Protein Classification

C2H2-type zinc finger protein( domain architecture ID 10620911)

Cys2His2 (C2H2)-type zinc finger protein may be involved in transcriptional regulation

CATH:  3.30.160.60
Gene Ontology:  GO:0003677|GO:0008270|GO:0003700
PubMed:  11179890|12665246|11361095|10940247
SCOP:  4003583

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
zf-C2H2_4 pfam13894
C2H2-type zinc finger; This family contains a number of divergent C2H2 type zinc fingers.
 319-339 4.58e-03

C2H2-type zinc finger; This family contains a number of divergent C2H2 type zinc fingers.


:

Pssm-ID: 464025  Cd Length: 24  Bit Score: 34.16  E-value: 4.58e-03
                          10        20
                  ....*....|....*....|.
gi 1101010094 319 CPVCQEHFRERHHLSRHMTSH 339
Cdd:pfam13894   3 CPICGKSFSSKKSLKRHLKTH 23
 
Name Accession Description Interval E-value
zf-C2H2_4 pfam13894
C2H2-type zinc finger; This family contains a number of divergent C2H2 type zinc fingers.
 319-339 4.58e-03

C2H2-type zinc finger; This family contains a number of divergent C2H2 type zinc fingers.


Pssm-ID: 464025  Cd Length: 24  Bit Score: 34.16  E-value: 4.58e-03
                          10        20
                  ....*....|....*....|.
gi 1101010094 319 CPVCQEHFRERHHLSRHMTSH 339
Cdd:pfam13894   3 CPICGKSFSSKKSLKRHLKTH 23
ZnF_C2H2 smart00355
zinc finger;
319-339 8.30e-03

zinc finger;


Pssm-ID: 197676  Cd Length: 23  Bit Score: 33.59  E-value: 8.30e-03
                           10        20
                   ....*....|....*....|.
gi 1101010094  319 CPVCQEHFRERHHLSRHMTSH 339
Cdd:smart00355   3 CPECGKVFKSKSALREHMRTH 23
 
Name Accession Description Interval E-value
zf-C2H2_4 pfam13894
C2H2-type zinc finger; This family contains a number of divergent C2H2 type zinc fingers.
 319-339 4.58e-03

C2H2-type zinc finger; This family contains a number of divergent C2H2 type zinc fingers.


Pssm-ID: 464025  Cd Length: 24  Bit Score: 34.16  E-value: 4.58e-03
                          10        20
                  ....*....|....*....|.
gi 1101010094 319 CPVCQEHFRERHHLSRHMTSH 339
Cdd:pfam13894   3 CPICGKSFSSKKSLKRHLKTH 23
ZnF_C2H2 smart00355
zinc finger;
319-339 8.30e-03

zinc finger;


Pssm-ID: 197676  Cd Length: 23  Bit Score: 33.59  E-value: 8.30e-03
                           10        20
                   ....*....|....*....|.
gi 1101010094  319 CPVCQEHFRERHHLSRHMTSH 339
Cdd:smart00355   3 CPECGKVFKSKSALREHMRTH 23
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH