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Conserved domains on  [gi|1063732166|ref|NP_001332343|]
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Regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana]

Protein Classification

RCC1 domain-containing protein( domain architecture ID 11474102)

RCC1 (regulator of chromosome condensation) domain-containing protein similar to Arabidopsis UVR8 (UV RESISTANCE LOCUS 8), which plays an important role in mediating the effects of UV-B radiation on pathogen resistance by controlling the expression of the sinapate biosynthetic pathway.

Gene Ontology:  GO:0003682|GO:0005085
PubMed:  9510255|18442486

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 6-318 1.94e-75

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


:

Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 235.64  E-value: 1.94e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063732166   6 SVIAWGSGEDGQLGLGTDEEKELASVVDALEpfNVRSVVGGSRNSLAICDDGKLFTWGWNQRGTLGhPPETKTESTPSLV 85
Cdd:COG5184    18 TVWCWGDNSYGQLGDGTTTDRSTPVRVPGLS--NVVAVAAGGDHTCALKADGTVWCWGNNSYGQLG-DGTTTDRTTPVKV 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063732166  86 KSLANVkiVQAAIGGWHCLAVDDQGRAYAWGGNEYGQcgeepskdeTGRPVRRDIVIPKRCAQQLT-VRQVAAGGTHSVV 164
Cdd:COG5184    95 PGLTGV--VAVAAGYYHSCALKSDGTVWCWGDNSSGQ---------LGDGTTTNRLTPVQVDAGLSgVVAIAAGGYHTCA 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063732166 165 LTREGYVWTWGQPWP----PGDIKQISVPVRVQGLENVRLIAVGAFHNLALKEDGTLWAWGNNEYGQLGTGDTQPRSYPI 240
Cdd:COG5184   164 LKSDGTVWCWGANSYgqlgDGTTTDRPTPVQVGGLSGVVAVAAGGDHSCALKSDGTVWCWGSNSSGQLGDGTTTDRATPV 243

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1063732166 241 PVQGLDDltLVDIAAGGWHSTALTNEGEVYGWGRGEHGRLgfGDNDKSSKMLPQKVNLLAgeDIIQVKSTNHQFLTLL 318
Cdd:COG5184   244 QVAGLTG--VVAIAAGGSHTCALKSDGTVWCWGDNSYGQL--GDGTTTDRSTPVKVPGLS--GVVAVAAGSSHTCALL 315
 
Name Accession Description Interval E-value
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 6-318 1.94e-75

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 235.64  E-value: 1.94e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063732166   6 SVIAWGSGEDGQLGLGTDEEKELASVVDALEpfNVRSVVGGSRNSLAICDDGKLFTWGWNQRGTLGhPPETKTESTPSLV 85
Cdd:COG5184    18 TVWCWGDNSYGQLGDGTTTDRSTPVRVPGLS--NVVAVAAGGDHTCALKADGTVWCWGNNSYGQLG-DGTTTDRTTPVKV 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063732166  86 KSLANVkiVQAAIGGWHCLAVDDQGRAYAWGGNEYGQcgeepskdeTGRPVRRDIVIPKRCAQQLT-VRQVAAGGTHSVV 164
Cdd:COG5184    95 PGLTGV--VAVAAGYYHSCALKSDGTVWCWGDNSSGQ---------LGDGTTTNRLTPVQVDAGLSgVVAIAAGGYHTCA 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063732166 165 LTREGYVWTWGQPWP----PGDIKQISVPVRVQGLENVRLIAVGAFHNLALKEDGTLWAWGNNEYGQLGTGDTQPRSYPI 240
Cdd:COG5184   164 LKSDGTVWCWGANSYgqlgDGTTTDRPTPVQVGGLSGVVAVAAGGDHSCALKSDGTVWCWGSNSSGQLGDGTTTDRATPV 243

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1063732166 241 PVQGLDDltLVDIAAGGWHSTALTNEGEVYGWGRGEHGRLgfGDNDKSSKMLPQKVNLLAgeDIIQVKSTNHQFLTLL 318
Cdd:COG5184   244 QVAGLTG--VVAIAAGGSHTCALKSDGTVWCWGDNSYGQL--GDGTTTDRSTPVKVPGLS--GVVAVAAGSSHTCALL 315
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
214-263 1.62e-15

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 69.85  E-value: 1.62e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1063732166 214 DGTLWAWGNNEYGQLGTGDTQPRSYPIPVQGLDDLTLVDIAAGGWHSTAL 263
Cdd:pfam00415   1 DGRVYTWGRNDYGQLGLGTTENVLVPQKVEGLSGNKVVQVACGGDHTVAL 50
 
Name Accession Description Interval E-value
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 6-318 1.94e-75

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 235.64  E-value: 1.94e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063732166   6 SVIAWGSGEDGQLGLGTDEEKELASVVDALEpfNVRSVVGGSRNSLAICDDGKLFTWGWNQRGTLGhPPETKTESTPSLV 85
Cdd:COG5184    18 TVWCWGDNSYGQLGDGTTTDRSTPVRVPGLS--NVVAVAAGGDHTCALKADGTVWCWGNNSYGQLG-DGTTTDRTTPVKV 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063732166  86 KSLANVkiVQAAIGGWHCLAVDDQGRAYAWGGNEYGQcgeepskdeTGRPVRRDIVIPKRCAQQLT-VRQVAAGGTHSVV 164
Cdd:COG5184    95 PGLTGV--VAVAAGYYHSCALKSDGTVWCWGDNSSGQ---------LGDGTTTNRLTPVQVDAGLSgVVAIAAGGYHTCA 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063732166 165 LTREGYVWTWGQPWP----PGDIKQISVPVRVQGLENVRLIAVGAFHNLALKEDGTLWAWGNNEYGQLGTGDTQPRSYPI 240
Cdd:COG5184   164 LKSDGTVWCWGANSYgqlgDGTTTDRPTPVQVGGLSGVVAVAAGGDHSCALKSDGTVWCWGSNSSGQLGDGTTTDRATPV 243

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1063732166 241 PVQGLDDltLVDIAAGGWHSTALTNEGEVYGWGRGEHGRLgfGDNDKSSKMLPQKVNLLAgeDIIQVKSTNHQFLTLL 318
Cdd:COG5184   244 QVAGLTG--VVAIAAGGSHTCALKSDGTVWCWGDNSYGQL--GDGTTTDRSTPVKVPGLS--GVVAVAAGSSHTCALL 315
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 6-289 3.93e-70

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 222.16  E-value: 3.93e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063732166   6 SVIAWGSGEDGQLGLGTDEEKELASVVDALEpfNVRSVVGGSRNSLAICDDGKLFTWGWNQRGTLGhPPETKTESTPSLV 85
Cdd:COG5184    68 TVWCWGNNSYGQLGDGTTTDRTTPVKVPGLT--GVVAVAAGYYHSCALKSDGTVWCWGDNSSGQLG-DGTTTNRLTPVQV 144

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063732166  86 kSLANVKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPSKDETgrpvrrdivIPKRCAQQLTVRQVAAGGTHSVVL 165
Cdd:COG5184   145 -DAGLSGVVAIAAGGYHTCALKSDGTVWCWGANSYGQLGDGTTTDRP---------TPVQVGGLSGVVAVAAGGDHSCAL 214

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063732166 166 TREGYVWTWGQPWP----PGDIKQISVPVRVQGLENVRLIAVGAFHNLALKEDGTLWAWGNNEYGQLGTGDTQPRSYPIP 241
Cdd:COG5184   215 KSDGTVWCWGSNSSgqlgDGTTTDRATPVQVAGLTGVVAIAAGGSHTCALKSDGTVWCWGDNSYGQLGDGTTTDRSTPVK 294

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 1063732166 242 VQGLDDltLVDIAAGGWHSTALTNEGEVYGWGRGEHGRLGFGDNDKSS 289
Cdd:COG5184   295 VPGLSG--VVAVAAGSSHTCALLTDGTVWCWGDNAYGQLGDGTTTDRS 340
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 41-307 6.98e-66

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 211.37  E-value: 6.98e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063732166  41 RSVVGGSRNSLAICDDGKLFTWGWNQRGTLGHPpETKTESTPSLVKSLANVkiVQAAIGGWHCLAVDDQGRAYAWGGNEY 120
Cdd:COG5184     1 TQVAAGGSHSCALKSDGTVWCWGDNSYGQLGDG-TTTDRSTPVRVPGLSNV--VAVAAGGDHTCALKADGTVWCWGNNSY 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063732166 121 GQcgeepskdeTGRPVRRDIVIPKRCAQQLTVRQVAAGGTHSVVLTREGYVWTWGQ----PWPPGDIKQISVPVRV-QGL 195
Cdd:COG5184    78 GQ---------LGDGTTTDRTTPVKVPGLTGVVAVAAGYYHSCALKSDGTVWCWGDnssgQLGDGTTTNRLTPVQVdAGL 148

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063732166 196 ENVRLIAVGAFHNLALKEDGTLWAWGNNEYGQLGTGDTQPRSYPIPVQGLDDLTlvDIAAGGWHSTALTNEGEVYGWGRG 275
Cdd:COG5184   149 SGVVAIAAGGYHTCALKSDGTVWCWGANSYGQLGDGTTTDRPTPVQVGGLSGVV--AVAAGGDHSCALKSDGTVWCWGSN 226

                         250       260       270
                  ....*....|....*....|....*....|..
gi 1063732166 276 EHGRLGFGDNDKSSkmLPQKVnlLAGEDIIQV 307
Cdd:COG5184   227 SSGQLGDGTTTDRA--TPVQV--AGLTGVVAI 254
ATS1 COG5184
Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, ...
 6-240 4.94e-55

Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton];


Pssm-ID: 444065 [Multi-domain]  Cd Length: 343  Bit Score: 183.25  E-value: 4.94e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063732166   6 SVIAWGSGEDGQLGLGTDEEKELASVVDAlEPFNVRSVVGGSRNSLAICDDGKLFTWGWNQRGTLGHPpETKTESTPSLV 85
Cdd:COG5184   118 TVWCWGDNSSGQLGDGTTTNRLTPVQVDA-GLSGVVAIAAGGYHTCALKSDGTVWCWGANSYGQLGDG-TTTDRPTPVQV 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063732166  86 KSLANVkiVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPSKDETgrpvrrdivIPKRCAQQLTVRQVAAGGTHSVVL 165
Cdd:COG5184   196 GGLSGV--VAVAAGGDHSCALKSDGTVWCWGSNSSGQLGDGTTTDRA---------TPVQVAGLTGVVAIAAGGSHTCAL 264

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063732166 166 TREGYVWTWG-----QPWPpGDIKQISVPVRVQGLENVRLIAVGAFHNLALKEDGTLWAWGNNEYGQLGTGDTQPRSYPI 240
Cdd:COG5184   265 KSDGTVWCWGdnsygQLGD-GTTTDRSTPVKVPGLSGVVAVAAGSSHTCALLTDGTVWCWGDNAYGQLGDGTTTDRSTPV 343
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
214-263 1.62e-15

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 69.85  E-value: 1.62e-15
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1063732166 214 DGTLWAWGNNEYGQLGTGDTQPRSYPIPVQGLDDLTLVDIAAGGWHSTAL 263
Cdd:pfam00415   1 DGRVYTWGRNDYGQLGLGTTENVLVPQKVEGLSGNKVVQVACGGDHTVAL 50
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
56-106 4.22e-13

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 62.92  E-value: 4.22e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1063732166  56 DGKLFTWGWNQRGTLGHPPeTKTESTPSLVKSLANVKIVQAAIGGWHCLAV 106
Cdd:pfam00415   1 DGRVYTWGRNDYGQLGLGT-TENVLVPQKVEGLSGNKVVQVACGGDHTVAL 50
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
198-227 5.77e-09

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 50.89  E-value: 5.77e-09
                          10        20        30
                  ....*....|....*....|....*....|
gi 1063732166 198 VRLIAVGAFHNLALKEDGTLWAWGNNEYGQ 227
Cdd:pfam13540   1 VVSVAAGDNHTLALTSDGRVYCWGDNSYGQ 30
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
266-307 1.67e-08

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 50.21  E-value: 1.67e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1063732166 266 EGEVYGWGRGEHGRLGFGDNDksSKMLPQKVNLLAGEDIIQV 307
Cdd:pfam00415   1 DGRVYTWGRNDYGQLGLGTTE--NVLVPQKVEGLSGNKVVQV 40
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
251-279 6.19e-07

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 45.11  E-value: 6.19e-07
                          10        20
                  ....*....|....*....|....*....
gi 1063732166 251 VDIAAGGWHSTALTNEGEVYGWGRGEHGR 279
Cdd:pfam13540   2 VSVAAGDNHTLALTSDGRVYCWGDNSYGQ 30
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
93-122 1.22e-06

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 44.34  E-value: 1.22e-06
                          10        20        30
                  ....*....|....*....|....*....|
gi 1063732166  93 IVQAAIGGWHCLAVDDQGRAYAWGGNEYGQ 122
Cdd:pfam13540   1 VVSVAAGDNHTLALTSDGRVYCWGDNSYGQ 30
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
6-53 2.19e-06

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 44.05  E-value: 2.19e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1063732166   6 SVIAWGSGEDGQLGLGTDEEKELASVVDALEPFNVRSVVGGSRNSLAI 53
Cdd:pfam00415   3 RVYTWGRNDYGQLGLGTTENVLVPQKVEGLSGNKVVQVACGGDHTVAL 50
RCC1 pfam00415
Regulator of chromosome condensation (RCC1) repeat;
110-165 3.09e-06

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 395335 [Multi-domain]  Cd Length: 50  Bit Score: 43.66  E-value: 3.09e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1063732166 110 GRAYAWGGNEYGQCGeepSKDETGRPVRRDIVIPKRCaqqlTVRQVAAGGTHSVVL 165
Cdd:pfam00415   2 GRVYTWGRNDYGQLG---LGTTENVLVPQKVEGLSGN----KVVQVACGGDHTVAL 50
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
152-175 2.42e-05

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 40.49  E-value: 2.42e-05
                          10        20
                  ....*....|....*....|....
gi 1063732166 152 VRQVAAGGTHSVVLTREGYVWTWG 175
Cdd:pfam13540   1 VVSVAAGDNHTLALTSDGRVYCWG 24
RCC1_2 pfam13540
Regulator of chromosome condensation (RCC1) repeat;
40-68 5.10e-05

Regulator of chromosome condensation (RCC1) repeat;


Pssm-ID: 463914 [Multi-domain]  Cd Length: 30  Bit Score: 39.71  E-value: 5.10e-05
                          10        20
                  ....*....|....*....|....*....
gi 1063732166  40 VRSVVGGSRNSLAICDDGKLFTWGWNQRG 68
Cdd:pfam13540   1 VVSVAAGDNHTLALTSDGRVYCWGDNSYG 29
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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