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Conserved domains on  [gi|1063730737|ref|NP_001331754|]
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Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

Protein Classification

pentatricopeptide repeat-containing protein( domain architecture ID 1000585)

pentatricopeptide repeat (PPR)-containing protein may form anti-parallel alpha helices and bind single-stranded RNA in a sequence-specific and modular manner

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03077 super family cl33629
Protein ECB2; Provisional
 104-694 5.29e-71

Protein ECB2; Provisional


The actual alignment was detected with superfamily member PLN03077:

Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 247.84  E-value: 5.29e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063730737 104 ETMRFFKAMHFADEPkPSSVTFAIVLPLCVRLGDSYNGKSMHSYIIKAGLEKDTLVGNALVSMYAKFGFIFpDAYTAFDG 183
Cdd:PLN03077   69 QALKLLESMQELRVP-VDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELV-HAWYVFGK 146

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063730737 184 IADKDVVSWNAIIAGFSENNMMADAFRSFCLMLKEPTEPNYATIANVLPVCASMDKniaCRSGRQIHSYVVqRSWLQTHV 263
Cdd:PLN03077  147 MPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPD---LARGREVHAHVV-RFGFELDV 222

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063730737 264 FVCNSLVSFYLRVGRIEEAASLFTRMGSKDLVSWNVVIAGYASNCEWFKAFQLFHNLVhKGDVSPDSVTIISILPVCAQL 343
Cdd:PLN03077  223 DVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMR-ELSVDPDLMTITSVISACELL 301

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063730737 344 TDLASGKEIHSYILRHSYLLeDTSVGNALISFYARFGDTSAAYWAFSLMSTKDIISWNAILDAFADSPKQFQFLNLLHHL 423
Cdd:PLN03077  302 GDERLGREMHGYVVKTGFAV-DVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALM 380

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063730737 424 LNEAITLDSVTILSLLKFCINVQGIGKVKEVHGYSVKAGLLhdeEEPKLGNALLDAYAKCGNVEYAHKIFLGLSERrTLV 503
Cdd:PLN03077  381 EQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLI---SYVVVANALIEMYSKCKCIDKALEVFHNIPEK-DVI 456

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063730737 504 SYNSLLSGY-VNSGSHddaqmlftemsttdlttwslmvriyaesccpnEAIGVFREIQARgMRPNTVTIMNLLPVCAQLA 582
Cdd:PLN03077  457 SWTSIIAGLrLNNRCF--------------------------------EALIFFRQMLLT-LKPNSVTLIAALSACARIG 503

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063730737 583 SLHLVRQCHGYIIRGGLG-DIRLKGTLLDVYAKCGSLKHAYSVFQSDARrDLVMFTAMVAGYAVHGRGKEALMIYSHMTE 661
Cdd:PLN03077  504 ALMCGKEIHAHVLRTGIGfDGFLPNALLDLYVRCGRMNYAWNQFNSHEK-DVVSWNILLTGYVAHGKGSMAVELFNRMVE 582

                         570       580       590
                  ....*....|....*....|....*....|...
gi 1063730737 662 SNIKPDHVFITTMLTACCHAGLIQDGLQIYDSI 694
Cdd:PLN03077  583 SGVNPDEVTFISLLCACSRSGMVTQGLEYFHSM 615
 
Name Accession Description Interval E-value
PLN03077 PLN03077
Protein ECB2; Provisional
 104-694 5.29e-71

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 247.84  E-value: 5.29e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063730737 104 ETMRFFKAMHFADEPkPSSVTFAIVLPLCVRLGDSYNGKSMHSYIIKAGLEKDTLVGNALVSMYAKFGFIFpDAYTAFDG 183
Cdd:PLN03077   69 QALKLLESMQELRVP-VDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELV-HAWYVFGK 146

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063730737 184 IADKDVVSWNAIIAGFSENNMMADAFRSFCLMLKEPTEPNYATIANVLPVCASMDKniaCRSGRQIHSYVVqRSWLQTHV 263
Cdd:PLN03077  147 MPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPD---LARGREVHAHVV-RFGFELDV 222

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063730737 264 FVCNSLVSFYLRVGRIEEAASLFTRMGSKDLVSWNVVIAGYASNCEWFKAFQLFHNLVhKGDVSPDSVTIISILPVCAQL 343
Cdd:PLN03077  223 DVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMR-ELSVDPDLMTITSVISACELL 301

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063730737 344 TDLASGKEIHSYILRHSYLLeDTSVGNALISFYARFGDTSAAYWAFSLMSTKDIISWNAILDAFADSPKQFQFLNLLHHL 423
Cdd:PLN03077  302 GDERLGREMHGYVVKTGFAV-DVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALM 380

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063730737 424 LNEAITLDSVTILSLLKFCINVQGIGKVKEVHGYSVKAGLLhdeEEPKLGNALLDAYAKCGNVEYAHKIFLGLSERrTLV 503
Cdd:PLN03077  381 EQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLI---SYVVVANALIEMYSKCKCIDKALEVFHNIPEK-DVI 456

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063730737 504 SYNSLLSGY-VNSGSHddaqmlftemsttdlttwslmvriyaesccpnEAIGVFREIQARgMRPNTVTIMNLLPVCAQLA 582
Cdd:PLN03077  457 SWTSIIAGLrLNNRCF--------------------------------EALIFFRQMLLT-LKPNSVTLIAALSACARIG 503

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063730737 583 SLHLVRQCHGYIIRGGLG-DIRLKGTLLDVYAKCGSLKHAYSVFQSDARrDLVMFTAMVAGYAVHGRGKEALMIYSHMTE 661
Cdd:PLN03077  504 ALMCGKEIHAHVLRTGIGfDGFLPNALLDLYVRCGRMNYAWNQFNSHEK-DVVSWNILLTGYVAHGKGSMAVELFNRMVE 582

                         570       580       590
                  ....*....|....*....|....*....|...
gi 1063730737 662 SNIKPDHVFITTMLTACCHAGLIQDGLQIYDSI 694
Cdd:PLN03077  583 SGVNPDEVTFISLLCACSRSGMVTQGLEYFHSM 615
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 631-680 1.14e-07

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 48.51  E-value: 1.14e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1063730737 631 RDLVMFTAMVAGYAVHGRGKEALMIYSHMTESNIKPDHVFITTMLTACCH 680
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 634-667 4.02e-04

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 38.21  E-value: 4.02e-04
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1063730737 634 VMFTAMVAGYAVHGRGKEALMIYSHMTESNIKPD 667
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
 
Name Accession Description Interval E-value
PLN03077 PLN03077
Protein ECB2; Provisional
 104-694 5.29e-71

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 247.84  E-value: 5.29e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063730737 104 ETMRFFKAMHFADEPkPSSVTFAIVLPLCVRLGDSYNGKSMHSYIIKAGLEKDTLVGNALVSMYAKFGFIFpDAYTAFDG 183
Cdd:PLN03077   69 QALKLLESMQELRVP-VDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELV-HAWYVFGK 146

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063730737 184 IADKDVVSWNAIIAGFSENNMMADAFRSFCLMLKEPTEPNYATIANVLPVCASMDKniaCRSGRQIHSYVVqRSWLQTHV 263
Cdd:PLN03077  147 MPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPD---LARGREVHAHVV-RFGFELDV 222

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063730737 264 FVCNSLVSFYLRVGRIEEAASLFTRMGSKDLVSWNVVIAGYASNCEWFKAFQLFHNLVhKGDVSPDSVTIISILPVCAQL 343
Cdd:PLN03077  223 DVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMR-ELSVDPDLMTITSVISACELL 301

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063730737 344 TDLASGKEIHSYILRHSYLLeDTSVGNALISFYARFGDTSAAYWAFSLMSTKDIISWNAILDAFADSPKQFQFLNLLHHL 423
Cdd:PLN03077  302 GDERLGREMHGYVVKTGFAV-DVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALM 380

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063730737 424 LNEAITLDSVTILSLLKFCINVQGIGKVKEVHGYSVKAGLLhdeEEPKLGNALLDAYAKCGNVEYAHKIFLGLSERrTLV 503
Cdd:PLN03077  381 EQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLI---SYVVVANALIEMYSKCKCIDKALEVFHNIPEK-DVI 456

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063730737 504 SYNSLLSGY-VNSGSHddaqmlftemsttdlttwslmvriyaesccpnEAIGVFREIQARgMRPNTVTIMNLLPVCAQLA 582
Cdd:PLN03077  457 SWTSIIAGLrLNNRCF--------------------------------EALIFFRQMLLT-LKPNSVTLIAALSACARIG 503

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063730737 583 SLHLVRQCHGYIIRGGLG-DIRLKGTLLDVYAKCGSLKHAYSVFQSDARrDLVMFTAMVAGYAVHGRGKEALMIYSHMTE 661
Cdd:PLN03077  504 ALMCGKEIHAHVLRTGIGfDGFLPNALLDLYVRCGRMNYAWNQFNSHEK-DVVSWNILLTGYVAHGKGSMAVELFNRMVE 582

                         570       580       590
                  ....*....|....*....|....*....|...
gi 1063730737 662 SNIKPDHVFITTMLTACCHAGLIQDGLQIYDSI 694
Cdd:PLN03077  583 SGVNPDEVTFISLLCACSRSGMVTQGLEYFHSM 615
PLN03077 PLN03077
Protein ECB2; Provisional
 57-528 1.13e-70

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 246.69  E-value: 1.13e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063730737  57 EVSKSVLNMYAKCRRMDDCQKMFRQMDSLDPVVWNIVLTGLS-VSCGRETMRFFKAMHFADePKPSSVTFAIVLPLCVRL 135
Cdd:PLN03077  122 RLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAkAGYFDEALCLYHRMLWAG-VRPDVYTFPCVLRTCGGI 200

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063730737 136 GDSYNGKSMHSYIIKAGLEKDTLVGNALVSMYAKFGFIFpDAYTAFDGIADKDVVSWNAIIAGFSENNMMADAFRSFCLM 215
Cdd:PLN03077  201 PDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVV-SARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTM 279

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063730737 216 LKEPTEPNYATIANVLPVCASMDKNiacRSGRQIHSYVVQRSWlQTHVFVCNSLVSFYLRVGRIEEAASLFTRMGSKDLV 295
Cdd:PLN03077  280 RELSVDPDLMTITSVISACELLGDE---RLGREMHGYVVKTGF-AVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAV 355

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063730737 296 SWNVVIAGYASNCEWFKAFQLFHNLVHKGdVSPDSVTIISILPVCAQLTDLASGKEIHSYILRH---SYLLedtsVGNAL 372
Cdd:PLN03077  356 SWTAMISGYEKNGLPDKALETYALMEQDN-VSPDEITIASVLSACACLGDLDVGVKLHELAERKgliSYVV----VANAL 430

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063730737 373 ISFYARFGDTSAAYWAFSLMSTKDIISWNAILDAFADSPKQFQFLNLLHHLLNEaITLDSVTILSLLKFCINVQGIGKVK 452
Cdd:PLN03077  431 IEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGK 509

                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1063730737 453 EVHGYSVKAGLLHDEEEPklgNALLDAYAKCGNVEYAHKIFlgLSERRTLVSYNSLLSGYVNSGSHDDAQMLFTEM 528
Cdd:PLN03077  510 EIHAHVLRTGIGFDGFLP---NALLDLYVRCGRMNYAWNQF--NSHEKDVVSWNILLTGYVAHGKGSMAVELFNRM 580
PLN03077 PLN03077
Protein ECB2; Provisional
 13-442 3.12e-62

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 223.19  E-value: 3.12e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063730737  13 LLSGFGTDHRVFLDVVKACASVSDLTSGRALHGCVFKLGHIACSEVSKSVLNMYAKCRRMDDCQKMFRQMDSLDPVVWNI 92
Cdd:PLN03077  179 LWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNA 258

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063730737  93 VLTG-LSVSCGRETMRFFKAMHfADEPKPSSVTFAIVLPLCVRLGDSYNGKSMHSYIIKAGLEKDTLVGNALVSMYAKFG 171
Cdd:PLN03077  259 MISGyFENGECLEGLELFFTMR-ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLG 337

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063730737 172 fIFPDAYTAFDGIADKDVVSWNAIIAGFSENNMMADAFRSFCLMLKEPTEPNYATIANVLPVCASMDKniaCRSGRQIHS 251
Cdd:PLN03077  338 -SWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGD---LDVGVKLHE 413

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063730737 252 yVVQRSWLQTHVFVCNSLVSFYLRVGRIEEAASLFTRMGSKDLVSWNVVIAGYASNCEWFKAFQLFHNLvhKGDVSPDSV 331
Cdd:PLN03077  414 -LAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQM--LLTLKPNSV 490

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063730737 332 TIISILPVCAQLTDLASGKEIHSYILRHSYLLEDTsVGNALISFYARFGDTSAAYWAFSLmSTKDIISWNAILDAFADSP 411
Cdd:PLN03077  491 TLIAALSACARIGALMCGKEIHAHVLRTGIGFDGF-LPNALLDLYVRCGRMNYAWNQFNS-HEKDVVSWNILLTGYVAHG 568

                         410       420       430
                  ....*....|....*....|....*....|.
gi 1063730737 412 KQFQFLNLLHHLLNEAITLDSVTILSLLKFC 442
Cdd:PLN03077  569 KGSMAVELFNRMVESGVNPDEVTFISLLCAC 599
PLN03077 PLN03077
Protein ECB2; Provisional
 27-406 2.20e-46

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 176.96  E-value: 2.20e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063730737  27 VVKACASVSDLTSGRALHGCVFKLGHIACSEVSKSVLNMYAKCRRMDDCQKMFRQMDSLDPVVWNIVLTGLSVSCGRETM 106
Cdd:PLN03077  294 VISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKA 373

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063730737 107 RFFKAMHFADEPKPSSVTFAIVLPLCVRLGDSYNGKSMHSYIIKAGLEKDTLVGNALVSMYAKFGFIfPDAYTAFDGIAD 186
Cdd:PLN03077  374 LETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCI-DKALEVFHNIPE 452

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063730737 187 KDVVSWNAIIAGFSENNMMADAFRSFCLMLKEpTEPNYATIANVLPVCASMDkniACRSGRQIHSYVVqRSWLQTHVFVC 266
Cdd:PLN03077  453 KDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIG---ALMCGKEIHAHVL-RTGIGFDGFLP 527

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063730737 267 NSLVSFYLRVGRIEEAASLFTrMGSKDLVSWNVVIAGYASNCEWFKAFQLFHNLVhKGDVSPDSVTIISILPVCAQLTDL 346
Cdd:PLN03077  528 NALLDLYVRCGRMNYAWNQFN-SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMV-ESGVNPDEVTFISLLCACSRSGMV 605

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1063730737 347 ASGKEIHSYILRHSYLLEDTSVGNALISFYARFGDTSAAYWAFSLMS-TKDIISWNAILDA 406
Cdd:PLN03077  606 TQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPiTPDPAVWGALLNA 666
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 11-352 7.35e-40

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 156.57  E-value: 7.35e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063730737  11 FRLLS---GFGTDHRVFLDVVKACASVSDLTSGRALHGCVFKLGHIACSEVSKSVLNMYAKCRRMDDCQKMFRQMDSLDP 87
Cdd:PLN03081  110 FEILEagcPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNL 189

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063730737  88 VVWNIVLTGLsVSCG--RETMRFFKAMhFADEPKPSSVTFAIVLPLCVRLGDSYNGKSMHSYIIKAGLEKDTLVGNALVS 165
Cdd:PLN03081  190 ASWGTIIGGL-VDAGnyREAFALFREM-WEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALID 267

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063730737 166 MYAKFGFIfPDAYTAFDGIADKDVVSWNAIIAGFSENNMMADAFRSFCLMLKEPTEPNYATIANVLPVCASMDKniaCRS 245
Cdd:PLN03081  268 MYSKCGDI-EDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLAL---LEH 343

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063730737 246 GRQIHSYVVQRSwLQTHVFVCNSLVSFYLRVGRIEEAASLFTRMGSKDLVSWNVVIAGYASNCEWFKAFQLFHNLVHKGd 325
Cdd:PLN03081  344 AKQAHAGLIRTG-FPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEG- 421

                         330       340
                  ....*....|....*....|....*..
gi 1063730737 326 VSPDSVTIISILPVCAQLTDLASGKEI 352
Cdd:PLN03081  422 VAPNHVTFLAVLSACRYSGLSEQGWEI 448
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 312-698 7.77e-37

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 147.32  E-value: 7.77e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063730737 312 KAFQLFHNLVHKGDVSPDSVTIISILPVCAQLTDLASGKEIHSYILRHSYLLEDTSVgNALISFYARFGDTSAAYWAFSL 391
Cdd:PLN03081  105 EALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMM-NRVLLMHVKCGMLIDARRLFDE 183

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063730737 392 MSTKDIISWNAILDAFADSPKQFQFLNLLHHLLNEAITLDSVTILSLLKfciNVQGIGKV---KEVHGYSVKAGLLHDEe 468
Cdd:PLN03081  184 MPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLR---ASAGLGSAragQQLHCCVLKTGVVGDT- 259

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063730737 469 epKLGNALLDAYAKCGNVEYAHKIFLGLSERrTLVSYNSLLSGYVNSGSHDDAQMLFTEMSTT----DLTTWSLMVRIya 544
Cdd:PLN03081  260 --FVSCALIDMYSKCGDIEDARCVFDGMPEK-TTVAWNSMLAGYALHGYSEEALCLYYEMRDSgvsiDQFTFSIMIRI-- 334

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063730737 545 esccpneaigvfreiqargmrpntvtimnllpvCAQLASLHLVRQCHGYIIRGGLG-DIRLKGTLLDVYAKCGSLKHAYS 623
Cdd:PLN03081  335 ---------------------------------FSRLALLEHAKQAHAGLIRTGFPlDIVANTALVDLYSKWGRMEDARN 381

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1063730737 624 VFQSDARRDLVMFTAMVAGYAVHGRGKEALMIYSHMTESNIKPDHVFITTMLTACCHAGLIQDGLQIYDSIRTVH 698
Cdd:PLN03081  382 VFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENH 456
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 528-695 8.07e-09

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 59.12  E-value: 8.07e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063730737  528 MSTTDLTTWSLMVRIYAESCCPNEAIGVFREIQARGMRPNTVTIMNLLPVCAQLASLHLVRQC-HGYIIRGGLGDIRLKG 606
Cdd:PLN03218   432 IRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVfHEMVNAGVEANVHTFG 511

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063730737  607 TLLDVYAKCGSLKHA---YSVFQS-DARRDLVMFTAMVAGYAVHGRGKEALMIYSHMT-ESN-IKPDHVFITTMLTACCH 680
Cdd:PLN03218   512 ALIDGCARAGQVAKAfgaYGIMRSkNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKaETHpIDPDHITVGALMKACAN 591

                          170
                   ....*....|....*
gi 1063730737  681 AGLIQDGLQIYDSIR 695
Cdd:PLN03218   592 AGQVDRAKEVYQMIH 606
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 631-680 1.14e-07

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 48.51  E-value: 1.14e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1063730737 631 RDLVMFTAMVAGYAVHGRGKEALMIYSHMTESNIKPDHVFITTMLTACCH 680
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 505-685 6.71e-07

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 52.96  E-value: 6.71e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063730737  505 YNSLLSgyvnSGSHDDAQMLFTEMSTTDLTTwslMVRIYA----ESCCPNEAIG-VFReiQARGMRPNTVTIMN-LLPVC 578
Cdd:PLN03218   377 YNRLLR----DGRIKDCIDLLEDMEKRGLLD---MDKIYHakffKACKKQRAVKeAFR--FAKLIRNPTLSTFNmLMSVC 447

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063730737  579 AQ-------LASLHLVRQchgyiiRGGLGDIRLKGTLLDVYAKCGSLKHAYSVFQ----SDARRDLVMFTAMVAGYAVHG 647
Cdd:PLN03218   448 ASsqdidgaLRVLRLVQE------AGLKADCKLYTTLISTCAKSGKVDAMFEVFHemvnAGVEANVHTFGALIDGCARAG 521

                          170       180       190
                   ....*....|....*....|....*....|....*...
gi 1063730737  648 RGKEALMIYSHMTESNIKPDHVFITTMLTACCHAGLIQ 685
Cdd:PLN03218   522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVD 559
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 438-697 1.19e-06

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 52.19  E-value: 1.19e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063730737  438 LLKFCINVQGIGKVKEVHGYSVKAGLLHDeeePKLGNALLDAYAKCGNVEYAHKIFLGLSE---RRTLVSYNSLLSGYVN 514
Cdd:PLN03218   443 LMSVCASSQDIDGALRVLRLVQEAGLKAD---CKLYTTLISTCAKSGKVDAMFEVFHEMVNagvEANVHTFGALIDGCAR 519

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063730737  515 SGSHDDAQMLFTEMSTT----DLTTWSLMVRIYAESCCPNEAIGVFREIQARG--MRPNTVTIMNLLPVCAQLASLHLVR 588
Cdd:PLN03218   520 AGQVAKAFGAYGIMRSKnvkpDRVVFNALISACGQSGAVDRAFDVLAEMKAEThpIDPDHITVGALMKACANAGQVDRAK 599

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063730737  589 QCHGYIIRGGLgdirlKGTLlDVY-------AKCGSLKHAYSVF----QSDARRDLVMFTAMV--AGYAvhGRGKEALMI 655
Cdd:PLN03218   600 EVYQMIHEYNI-----KGTP-EVYtiavnscSQKGDWDFALSIYddmkKKGVKPDEVFFSALVdvAGHA--GDLDKAFEI 671

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|..
gi 1063730737  656 YSHMTESNIKPDHVFITTMLTACCHAGLIQDGLQIYDSIRTV 697
Cdd:PLN03218   672 LQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI 713
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 314-695 1.78e-06

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 51.42  E-value: 1.78e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063730737  314 FQLFHNLVHKGdVSPDSVTIISILPVCAQLTDLAsgKEIHSY-ILRHSYLLEDTSVGNALISFYARFGDTSAAYwafslm 392
Cdd:PLN03218   492 FEVFHEMVNAG-VEANVHTFGALIDGCARAGQVA--KAFGAYgIMRSKNVKPDRVVFNALISACGQSGAVDRAF------ 562

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063730737  393 stkdiiswnailDAFADSPKQFQflnllhhllneAITLDSVTILSLLKFCINVQGIGKVKEV----HGYSVKAgllhdee 468
Cdd:PLN03218   563 ------------DVLAEMKAETH-----------PIDPDHITVGALMKACANAGQVDRAKEVyqmiHEYNIKG------- 612

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063730737  469 EPKLGNALLDAYAKCGNVEYAHKIFLGLSeRRTLVSYNSLLSGYVNSGSHddAQMLftemsttdlttwslmvriyaescc 548
Cdd:PLN03218   613 TPEVYTIAVNSCSQKGDWDFALSIYDDMK-KKGVKPDEVFFSALVDVAGH--AGDL------------------------ 665

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1063730737  549 pNEAIGVFREIQARGMRPNTVTIMNLLPVCAQlaslhlvrqchgyiirggLGDIRlKGtlLDVYAKCGSLKHAYSVFQSD 628
Cdd:PLN03218   666 -DKAFEILQDARKQGIKLGTVSYSSLMGACSN------------------AKNWK-KA--LELYEDIKSIKLRPTVSTMN 723

                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1063730737  629 ArrdlvMFTAMVAGYAVhgrgKEALMIYSHMTESNIKPDHVFITTMLTACCHAGLIQDGLQIYDSIR 695
Cdd:PLN03218   724 A-----LITALCEGNQL----PKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAK 781
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 187-223 1.57e-05

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 42.74  E-value: 1.57e-05
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1063730737 187 KDVVSWNAIIAGFSENNMMADAFRSFCLMLKEPTEPN 223
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPN 37
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 292-332 4.58e-05

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 41.19  E-value: 4.58e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1063730737 292 KDLVSWNVVIAGYASNCEWFKAFQLFHNLVHKGdVSPDSVT 332
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRG-VKPNVYT 40
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 634-667 4.02e-04

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 38.21  E-value: 4.02e-04
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1063730737 634 VMFTAMVAGYAVHGRGKEALMIYSHMTESNIKPD 667
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 503-528 1.35e-03

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 36.67  E-value: 1.35e-03
                          10        20
                  ....*....|....*....|....*.
gi 1063730737 503 VSYNSLLSGYVNSGSHDDAQMLFTEM 528
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEM 26
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 503-528 2.64e-03

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 36.19  E-value: 2.64e-03
                          10        20
                  ....*....|....*....|....*.
gi 1063730737 503 VSYNSLLSGYVNSGSHDDAQMLFTEM 528
Cdd:pfam13041   4 VTYNTLINGYCKKGKVEEAFKLFNEM 29
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 634-664 2.92e-03

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 35.52  E-value: 2.92e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1063730737 634 VMFTAMVAGYAVHGRGKEALMIYSHMTESNI 664
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 535-568 4.10e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 35.51  E-value: 4.10e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1063730737 535 TWSLMVRIYAESCCPNEAIGVFREIQARGMRPNT 568
Cdd:TIGR00756   2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 295-330 6.98e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 34.74  E-value: 6.98e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1063730737 295 VSWNVVIAGYASNCEWFKAFQLFHNLVHKGdVSPDS 330
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERG-IEPDV 35
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 263-305 8.97e-03

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 34.65  E-value: 8.97e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1063730737 263 VFVCNSLVSFYLRVGRIEEAASLFTRMGSK----DLVSWNVVIAGYA 305
Cdd:pfam13041   3 VVTYNTLINGYCKKGKVEEAFKLFNEMKKRgvkpNVYTYTILINGLC 49
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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